ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HCP1_BRARE (Q7ZWG6) Heme carrier protein 1 30 2.2
2CORA_WHV8 (P69711) Core antigen 29 4.9
3CORA_WHV7 (P69710) Core antigen 29 4.9
4CORA_WHV59 (P69712) Core antigen 29 4.9
5CORA_WHV1 (P69709) Core antigen 29 4.9

>HCP1_BRARE (Q7ZWG6) Heme carrier protein 1|
          Length = 481

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -2

Query: 180 VITVYLGCGEIFLLSWVSSPRCY 112
           V+TV+LGC ++++L  +S+P C+
Sbjct: 297 VVTVHLGCSDLYVLYELSAPLCW 319



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>CORA_WHV8 (P69711) Core antigen|
          Length = 188

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 305 SIIFHVKIISEGMHS*QESCN*SGLMMKQPSTFTPPN 415
           S+ FH+  ++ G H+ QE     G+ ++ P+ + PPN
Sbjct: 100 SLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPYRPPN 136



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>CORA_WHV7 (P69710) Core antigen|
          Length = 188

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 305 SIIFHVKIISEGMHS*QESCN*SGLMMKQPSTFTPPN 415
           S+ FH+  ++ G H+ QE     G+ ++ P+ + PPN
Sbjct: 100 SLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPYRPPN 136



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>CORA_WHV59 (P69712) Core antigen|
          Length = 188

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 305 SIIFHVKIISEGMHS*QESCN*SGLMMKQPSTFTPPN 415
           S+ FH+  ++ G H+ QE     G+ ++ P+ + PPN
Sbjct: 100 SLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPYRPPN 136



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>CORA_WHV1 (P69709) Core antigen|
          Length = 188

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 305 SIIFHVKIISEGMHS*QESCN*SGLMMKQPSTFTPPN 415
           S+ FH+  ++ G H+ QE     G+ ++ P+ + PPN
Sbjct: 100 SLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPYRPPN 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,358,415
Number of Sequences: 219361
Number of extensions: 1277555
Number of successful extensions: 2241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2241
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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