ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25f11 |
|---|---|
| Clone Library Name | barley_pub |
>UBX_MUSDO (Q25451) Homeotic protein ultrabithorax (Fragment)| Length = 248 Score = 32.3 bits (72), Expect = 0.30 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = +2 Query: 188 GERGVGNRGNPGMTLATKNNSSAQRTKAGGQAGGG---VIRDSVC 313 G G G G+ G N ++ Q T GG AGGG +R S C Sbjct: 115 GGTGGGGGGSAGSANGANNTANGQNTSGGGGAGGGGGMPVRPSAC 159
>S2A4R_HUMAN (Q9NR83) SLC2A4 regulator (GLUT4 enhancer factor) (GEF) (Huntington| disease gene regulatory region-binding protein 1) (HDBP-1) Length = 387 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -1 Query: 324 SDDLQTLSRITPPPACPPAFVRCALLLFLVANVIPGLPRLPTPLSP 187 +D L +L+ ++P + PPAF R L L +P R P P P Sbjct: 254 TDGLSSLTPVSPTASMPPAFPRLELPELLEPPALPSPLRPPAPPLP 299
>FRQ_SORFI (Q09033) Frequency clock protein| Length = 997 Score = 29.3 bits (64), Expect = 2.6 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = -3 Query: 220 RIAAV-TYPPFPWPLEGVMLVSPLHYRLVAPCSRRERPDVLP---RWYVPGKFSSSHDDD 53 R+A++ T P P P ++++PL VA R P LP +Y P SS DD Sbjct: 815 RLASIRTSSPLPPPRSRNLILAPLQIEYVAGEFHRLNPASLPPPAMFYPPFSTDSSWDDG 874 Query: 52 DNV 44 D++ Sbjct: 875 DDL 877
>GPR62_HUMAN (Q9BZJ7) Probable G-protein coupled receptor 62 (hGPCR8)| Length = 368 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -1 Query: 315 LQTLSRITPPPACPPAFVRCALL 247 L LS + PPPA PPA RC++L Sbjct: 143 LGALSLLGPPPAPPPAPARCSVL 165
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +2 Query: 188 GERGVGNRGNPGMTLATKNNS---SAQRTKAGGQAGGGVI 298 G G+G NPG+ AT + S S RT+ GQ G G + Sbjct: 636 GGGGIGYEANPGVPPATMSGSMMGSDMRTERFGQGGAGPV 675
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +2 Query: 188 GERGVGNRGNPGMTLATKNNS---SAQRTKAGGQAGGGVI 298 G G+G NPG+ AT + S S RT+ GQ G G + Sbjct: 628 GGGGIGYEANPGVPPATMSGSMMGSDMRTERFGQGGAGPV 667
>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)| (dRING protein) (Sex comb extra protein) Length = 435 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 Query: 191 ERGVGNRGNPGMTLATKNNSSAQRTKAGGQAGGG 292 ++ + N N G+ L ++N RTK GG GGG Sbjct: 132 QQALVNSINEGIKLQSQNRPQRFRTKGGGGGGGG 165
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/37 (45%), Positives = 18/37 (48%) Frame = +2 Query: 182 RPGERGVGNRGNPGMTLATKNNSSAQRTKAGGQAGGG 292 RPG GNR NPGM QR AG + GGG Sbjct: 295 RPGGAPGGNRPNPGM--------MPQRPAAGPRPGGG 323
>Y4IP_RHISN (P55499) Hypothetical 14.4 kDa protein y4iP| Length = 131 Score = 28.5 bits (62), Expect = 4.4 Identities = 20/52 (38%), Positives = 25/52 (48%) Frame = -1 Query: 297 ITPPPACPPAFVRCALLLFLVANVIPGLPRLPTPLSPGLLKALC*SHHYITG 142 +T PA PPA +R L V+ + L TPLSPG K S H + G Sbjct: 1 MTAEPASPPAAIRVDLDAVFVSLELSKSIWLVTPLSPGSEKM---SRHSVPG 49
>GBX2_CHICK (O42230) Homeobox protein GBX-2 (Gastrulation and brain-specific| homeobox protein 2) Length = 340 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -1 Query: 297 ITPPPACPPAFVRCALLLFLVANVIPGLPRLPTPLSPGLLKAL 169 + PPP PPA + AL L P LP LP PGL + + Sbjct: 54 VLPPP--PPALPQAALQPPLPPAPPPPLPALPGAFCPGLAQGM 94
>MAF_AVIS4 (P23091) Transforming protein Maf| Length = 369 Score = 23.5 bits (49), Expect(2) = 5.8 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = +1 Query: 4 TAIIMISLFKGGFKHYRRHH 63 +A+I + +GG HY HH Sbjct: 159 SAVIAAAAAQGGAPHYHHHH 178 Score = 23.1 bits (48), Expect(2) = 5.8 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 6/48 (12%) Frame = +2 Query: 167 HNAFKRPGERGVGNRGN------PGMTLATKNNSSAQRTKAGGQAGGG 292 H+ P G G G PG + +SSA + GG GGG Sbjct: 175 HHHHHHPHHGGGGGGGGHPHGAAPGSAPPSSASSSAAGSGGGGGGGGG 222
>CAC1F_MOUSE (Q9JIS7) Voltage-dependent L-type calcium channel alpha-1F subunit| (Voltage-gated calcium channel alpha subunit Cav1.4) Length = 1985 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +3 Query: 60 SWDEENLPGTYQRGRTSGLS 119 S ++ +PGTY RGRTSG S Sbjct: 1821 SCEDLPIPGTYHRGRTSGPS 1840
>MCMR_DROME (Q9VF30) DNA replication licensing factor REC (Protein mini| chromosome maintenance-related) (Protein recombination-defective) Length = 885 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +2 Query: 239 KNNSSAQRTKAGGQAGGGVIRDSVCRSSLD 328 K SS Q T+ GG AGGG + + R+ L+ Sbjct: 798 KEGSSRQGTRGGGGAGGGAGKSAQLRNFLE 827
>ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing protein ZFN-like 1| Length = 476 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = -3 Query: 241 FGCQC---HSRIAAVTYPP--FPWPLEGVMLVSPLHYRLVAPCSRRERPDVLPRWYVPGK 77 FG C H V P +P PL+ + SP Y +A + RP V+P Y+PG Sbjct: 170 FGTTCKFHHPEFGGVPMTPGIYP-PLQSPSIASPHPYASLANW-QMGRPPVVPGSYIPGS 227 Query: 76 FS 71 ++ Sbjct: 228 YT 229
>GAP1_DROME (P48423) GTPase-activating protein (Ras GTPase-activating protein)| Length = 1163 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -2 Query: 173 RYVSLTITLPACSSM**KRETRCPPSLVC 87 R+V +TI +PAC + K++ C P +VC Sbjct: 277 RFVGVTIKVPACVDL-AKKQGTCDPFVVC 304
>VA5_VESVU (Q05110) Venom allergen 5 precursor (Antigen 5) (Ag5) (Allergen Ves| v 5) (Ves v V) Length = 227 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 167 HNAFKRPGERGVGNRGNPGMTLATKN 244 HN F++ RG+ RGNPG KN Sbjct: 71 HNDFRQKIARGLETRGNPGPQPPAKN 96
>PRXC_STRLI (P49323) Non-heme chloroperoxidase (EC 1.11.1.10) (Chloride| peroxidase) (CPO-L) (Chloroperoxidase L) Length = 275 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -3 Query: 187 WPLEGVMLVSPLHYRLVAPCSRRERPDVLPRWYVPGKFSSSHDDDDNV 44 W L+G+M + HY +A S + D L R VP +H DD V Sbjct: 183 WWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVP--VLVAHGTDDQV 228
>MIB_DROME (Q9VUX2) Ubiquitin ligase protein mind-bomb (EC 6.3.2.-) (Mind bomb| homolog) (D-mib) Length = 1226 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +2 Query: 197 GVGNRGNPGMTLATKNNSSAQRTKAGGQAGGG 292 GVG G G +L SS+ + AGG A GG Sbjct: 60 GVGGGGGGGGSLPGGTTSSSSASAAGGVAAGG 91
>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 538 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 199 PPFPWPLEGVMLVSPLHYRLVAPCSRRERPDVLP 98 PPFP P + S L+ L +P + + RP VLP Sbjct: 120 PPFPTPPQ-----SSLYPALTSPLNTKPRPQVLP 148
>VA5_VESSQ (P35786) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves s 5) (Ves| s V) Length = 205 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 167 HNAFKRPGERGVGNRGNPGMTLATKN 244 HN F+ RG+ RGNPG KN Sbjct: 49 HNDFRNKVARGLETRGNPGPQPPAKN 74
>VA5_VESPE (P35785) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves p 5) (Ves| p V) Length = 204 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 167 HNAFKRPGERGVGNRGNPGMTLATKN 244 HN F++ RG+ RGNPG KN Sbjct: 48 HNDFRQKIARGLETRGNPGPQPPAKN 73
>VA5_VESMC (P35760) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves m 5) (Ves| m V) Length = 204 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 167 HNAFKRPGERGVGNRGNPGMTLATKN 244 HN F++ RG+ RGNPG KN Sbjct: 48 HNDFRQKIARGLETRGNPGPQPPAKN 73
>VA5_VESGE (P35784) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves g 5) (Ves| g V) Length = 204 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 167 HNAFKRPGERGVGNRGNPGMTLATKN 244 HN F++ RG+ RGNPG KN Sbjct: 48 HNDFRQKIARGLETRGNPGPQPPAKN 73
>VA5_VESFL (P35783) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves f 5) (Ves| f V) Length = 204 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 167 HNAFKRPGERGVGNRGNPGMTLATKN 244 HN F++ RG+ RGNPG KN Sbjct: 48 HNDFRQKIARGLETRGNPGPQPPAKN 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,236,068 Number of Sequences: 219361 Number of extensions: 1211951 Number of successful extensions: 4117 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3914 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4111 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
