Clone Name | rbastl25f10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 129 bits (65), Expect = 7e-27 Identities = 95/105 (90%) Strand = Plus / Plus Query: 248 ctaagtaaagctggatgagcctaacattaactcaaacatgtcatctggggtgagaagggt 307 |||| |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 95649 ctaactaaagctggatgagcccaacatcaactcaaacatgtcatctggggtaagaagggt 95708 Query: 308 tgtaccaccaagaatgagctgcacatcaggtctgccgctctctga 352 ||| || |||||||| |||| |||||||||||||| ||| ||||| Sbjct: 95709 tgttcccccaagaataagctccacatcaggtctgctgctgtctga 95753
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 129 bits (65), Expect = 7e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 248 ctaagtaaagctggatgagcctaacattaactcaaacatgtcatctggggtgagaagggt 307 |||| |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 3318645 ctaactaaagctggatgagcccaacatcaactcaaacatgtcatctggggtaagaagggt 3318586 Query: 308 tgtaccaccaagaatgagctgcacatcaggtctgccgctctctga 352 ||| || |||||||| |||| |||||||||||||| ||| ||||| Sbjct: 3318585 tgttcccccaagaataagctccacatcaggtctgctgctgtctga 3318541
>dbj|AK072561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133P17, full insert sequence Length = 3521 Score = 129 bits (65), Expect = 7e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 248 ctaagtaaagctggatgagcctaacattaactcaaacatgtcatctggggtgagaagggt 307 |||| |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 2804 ctaactaaagctggatgagcccaacatcaactcaaacatgtcatctggggtaagaagggt 2745 Query: 308 tgtaccaccaagaatgagctgcacatcaggtctgccgctctctga 352 ||| || |||||||| |||| |||||||||||||| ||| ||||| Sbjct: 2744 tgttcccccaagaataagctccacatcaggtctgctgctgtctga 2700
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 129 bits (65), Expect = 7e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 248 ctaagtaaagctggatgagcctaacattaactcaaacatgtcatctggggtgagaagggt 307 |||| |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 3327350 ctaactaaagctggatgagcccaacatcaactcaaacatgtcatctggggtaagaagggt 3327291 Query: 308 tgtaccaccaagaatgagctgcacatcaggtctgccgctctctga 352 ||| || |||||||| |||| |||||||||||||| ||| ||||| Sbjct: 3327290 tgttcccccaagaataagctccacatcaggtctgctgctgtctga 3327246
>gb|AC106803.3| Homo sapiens chromosome 5 clone RP11-478A7, complete sequence Length = 169122 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 142 caaaaatcccatctcagaagcaaaacaa 169 ||||||||||||||||||| |||||||| Sbjct: 30221 caaaaatcccatctcagaaacaaaacaa 30248
>gb|AC151408.1| Pan troglodytes chromosome X clone PTB-007P20 map human ortholog q23, complete sequence Length = 68318 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 162 caaaacaatgtacagattaaat 183 |||||||||||||||||||||| Sbjct: 27525 caaaacaatgtacagattaaat 27546
>gb|AC006374.2| Homo sapiens BAC clone RP11-357D2 from 7, complete sequence Length = 160626 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 aatgtacagattaaatttacat 189 |||||||||||||||||||||| Sbjct: 41544 aatgtacagattaaatttacat 41523
>gb|AC164957.2| Mus musculus BAC clone RP23-480L9 from chromosome 17, complete sequence Length = 183439 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 165 aacaatgtacagattaaattta 186 |||||||||||||||||||||| Sbjct: 47295 aacaatgtacagattaaattta 47316
>emb|AL031117.1|HS914P14 Human DNA sequence from clone RP5-914P14 on chromosome Xq23 Contains the 3' end of the PAK3 gene for p21 (CDKN1A)-activated kinase 3, the CAPN6 gene for calpain 6, a glutamate dehydrogenase 1 (GLUD1) pseudogene and the 3' end of the DCX gene for doublecortex; lissencephaly, X-linked (doublecortin), complete sequence Length = 155375 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 162 caaaacaatgtacagattaaat 183 |||||||||||||||||||||| Sbjct: 103409 caaaacaatgtacagattaaat 103430
>emb|AL606467.5| Human DNA sequence from clone RP13-172P16 on chromosome Xp21.1-21.3 Contains a High mobility group protein 1 (HMG-1)(LOC340573) pseudogene, a novel gene and the 5'end of a novel gene (LOC158730), complete sequence Length = 138093 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 ccaaaggtatagtctaaatac 24 ||||||||||||||||||||| Sbjct: 22518 ccaaaggtatagtctaaatac 22538
>gb|AC087373.4| Homo sapiens chromosome 11, clone RP11-54J7, complete sequence Length = 200604 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 caaaacaatgtacagattaaa 182 ||||||||||||||||||||| Sbjct: 62585 caaaacaatgtacagattaaa 62605
>gb|AC027627.6| Homo sapiens BAC clone RP11-376O6 from 4, complete sequence Length = 191665 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 atcccatctcagaagcaaaacaatg 171 ||||||||||||||||| ||||||| Sbjct: 26373 atcccatctcagaagcataacaatg 26397
>emb|CT485603.4| RP43-005L22, complete sequence Length = 204041 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 ccaaaggtatagtctaaatac 24 ||||||||||||||||||||| Sbjct: 22785 ccaaaggtatagtctaaatac 22805
>gb|AC116384.9| Mus musculus chromosome 3, clone RP23-20L19, complete sequence Length = 203580 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 taaatactgggctgaagggg 37 |||||||||||||||||||| Sbjct: 29660 taaatactgggctgaagggg 29679
>gb|AC185995.2| Pan troglodytes BAC clone CH251-277I3 from chromosome 2, complete sequence Length = 161457 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 attaatgtctaagtaaagct 259 |||||||||||||||||||| Sbjct: 73115 attaatgtctaagtaaagct 73096
>gb|AC125016.20| Mus musculus chromosome 7, clone RP24-157A17, complete sequence Length = 176607 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 aaaacaatgtacagattaaattta 186 ||||||||||||||||| |||||| Sbjct: 153857 aaaacaatgtacagattcaattta 153880
>gb|AC127681.4| Mus musculus BAC clone RP24-164P24 from chromosome 3, complete sequence Length = 175131 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 taaatactgggctgaagggg 37 |||||||||||||||||||| Sbjct: 141126 taaatactgggctgaagggg 141145
>gb|AC122795.3| Mus musculus BAC clone RP24-226D9 from chromosome 6, complete sequence Length = 146405 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tatgtctaattaatgtctaa 251 |||||||||||||||||||| Sbjct: 94213 tatgtctaattaatgtctaa 94194
>emb|CR381602.30| Zebrafish DNA sequence from clone DKEY-183M22 in linkage group 6, complete sequence Length = 192136 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 agattaaatttacatgattg 194 |||||||||||||||||||| Sbjct: 14915 agattaaatttacatgattg 14934
>emb|CR769775.11| Human DNA sequence from clone RP11-449H15 on chromosome 9 Contains a novel gene, complete sequence Length = 169430 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 gacaagcagtacctggaagcaaga 228 |||||||||||| ||||||||||| Sbjct: 167906 gacaagcagtacatggaagcaaga 167883
>emb|BX664730.2| Human DNA sequence from clone RP11-118H15 on chromosome 9 Contains a novel gene, complete sequence Length = 171251 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 gacaagcagtacctggaagcaaga 228 |||||||||||| ||||||||||| Sbjct: 74002 gacaagcagtacatggaagcaaga 73979
>emb|AL845311.9| Human DNA sequence from clone RP11-402N8 on chromosome 9 Contains a novel gene and a CpG island, complete sequence Length = 148407 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 gacaagcagtacctggaagcaaga 228 |||||||||||| ||||||||||| Sbjct: 143428 gacaagcagtacatggaagcaaga 143405
>emb|AL354874.14| Human DNA sequence from clone RP11-38P6 on chromosome 9 Contains a novel gene, complete sequence Length = 88826 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 gacaagcagtacctggaagcaaga 228 |||||||||||| ||||||||||| Sbjct: 27333 gacaagcagtacatggaagcaaga 27356
>emb|AL353791.7| Human DNA sequence from clone RP11-475B17 on chromosome 9 Contains the 3' end of novel protein similar to contactin associated protein-like 3 (CNTNAP3) and a pseudogene similar to part of vomeronasal 2 family, complete sequence Length = 208233 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 gacaagcagtacctggaagcaaga 228 |||||||||||| ||||||||||| Sbjct: 189865 gacaagcagtacatggaagcaaga 189888
>gb|AC120042.3| Homo sapiens chromosome 8, clone RP11-659E9, complete sequence Length = 170940 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 actgggctgaaggggtggcaggga 46 |||||||||||||||||| ||||| Sbjct: 83762 actgggctgaaggggtgggaggga 83739
>gb|AC019357.7| Homo sapiens chromosome 8, clone RP11-687A13, complete sequence Length = 181694 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 actgggctgaaggggtggcaggga 46 |||||||||||||||||| ||||| Sbjct: 136974 actgggctgaaggggtgggaggga 136951
>gb|AC008761.8| Homo sapiens chromosome 19 clone CTD-3149D2, complete sequence Length = 226170 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 acctggaagcaagaatctat 234 |||||||||||||||||||| Sbjct: 224322 acctggaagcaagaatctat 224303
>emb|CR626925.1| Human DNA sequence from clone XX-NCIH2171_3N23, complete sequence Length = 122867 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 gcaatgtgggtggaaattat 92 |||||||||||||||||||| Sbjct: 69550 gcaatgtgggtggaaattat 69569
>emb|CR626893.1| Human DNA sequence from clone XX-NCIH2171_14M18, complete sequence Length = 113428 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 gcaatgtgggtggaaattat 92 |||||||||||||||||||| Sbjct: 44353 gcaatgtgggtggaaattat 44334
>gb|AF334829.1| Homo sapiens mitochondrial RNA-processing endoribonuclease RNA (RMRP) gene, complete sequence Length = 187856 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 aatgtctaagtaaagctgga 262 |||||||||||||||||||| Sbjct: 61226 aatgtctaagtaaagctgga 61207
>gb|AC109494.3| Homo sapiens chromosome 5 clone RP11-783J1, complete sequence Length = 172180 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 tgtgacttaacaattctctaagcc 131 ||||||||||| |||||||||||| Sbjct: 125612 tgtgacttaactattctctaagcc 125635
>gb|AC154878.7| Mus musculus chromosome 7, clone RP23-250P5, complete sequence Length = 180302 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 aaaacaatgtacagattaaattta 186 ||||||||||||||||| |||||| Sbjct: 114439 aaaacaatgtacagattcaattta 114416
>gb|AC020688.7| Homo sapiens chromosome 8, clone RP11-255B23, complete sequence Length = 198958 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 gcaatgtgggtggaaattat 92 |||||||||||||||||||| Sbjct: 131485 gcaatgtgggtggaaattat 131466
>gb|AC008842.6| Homo sapiens chromosome 5 clone CTD-2155H8, complete sequence Length = 125238 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 tgtgacttaacaattctctaagcc 131 ||||||||||| |||||||||||| Sbjct: 8130 tgtgacttaactattctctaagcc 8153
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 acaacattgtgacttaacaa 120 |||||||||||||||||||| Sbjct: 27331348 acaacattgtgacttaacaa 27331329
>gb|AC018690.5| Homo sapiens BAC clone RP11-527J8 from 2, complete sequence Length = 233117 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 attaatgtctaagtaaagct 259 |||||||||||||||||||| Sbjct: 64379 attaatgtctaagtaaagct 64360
>gb|AC010165.10|AC010165 Homo sapiens chromosome 5 clone RP11-17J3, complete sequence Length = 168909 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 tgtgacttaacaattctctaagcc 131 ||||||||||| |||||||||||| Sbjct: 104688 tgtgacttaactattctctaagcc 104665
>gb|AC022404.7|AC022404 Homo sapiens chromosome 14 clone CTD-2308C24 and RP11-757H14 map 14q31, complete sequence Length = 232309 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tacagattaaatttacatga 191 |||||||||||||||||||| Sbjct: 80681 tacagattaaatttacatga 80662
>dbj|AP004194.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0014E08 Length = 144219 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 acaacattgtgacttaacaa 120 |||||||||||||||||||| Sbjct: 14243 acaacattgtgacttaacaa 14224
>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05 Length = 182681 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 acaacattgtgacttaacaa 120 |||||||||||||||||||| Sbjct: 111865 acaacattgtgacttaacaa 111846
>emb|BX072582.6| Zebrafish DNA sequence from clone DKEY-222O19 in linkage group 11, complete sequence Length = 194918 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cagaagcaaaacaatgtaca 175 |||||||||||||||||||| Sbjct: 78068 cagaagcaaaacaatgtaca 78087
>gb|AY919043.1| Homo sapiens truncated REV1-like (yeast) (REV1L) gene, complete cds Length = 93047 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 attaatgtctaagtaaagct 259 |||||||||||||||||||| Sbjct: 57462 attaatgtctaagtaaagct 57481
>emb|AL133410.32| Human DNA sequence from clone RP11-112J3 on chromosome 9p13.1-13.3 Contains the 3' end of the CA9 gene for carbonic anhydrase IX (MN), the TPM2 gene for tropomyosin 2 (beta) (DA1, TMSB, AMCD1), the TLN1 gene for talin 1 (TLN, KIAA1027), the CREB3 gene for cAMP responsive element binding protein 3 (luman) (LZIP, LUMAN, MGC15333, MGC19782), the GBA2 gene for glucosidase, beta (bile acid) 2 (AD035, KIAA1605, MGC16895, DKFZp762K054), a novel gene (KIAA0258), five novel genes, the NPR2 gene for natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B) (NPRB, ANPRB, GUC2B, NPRBi), the SPAG8 gene for sperm associated antigen 8 (SMP1, BS-84, HSD-1, hSMP-1, MGC26201), the HINT2 gene for Histidine triad nucleotide binding protein 2, the gene for NAG-5 protein (LOC51754), an olfactory receptor pseudogene, the gene for a novel seven transmembrane helix receptor, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5,13kDa (B13, NUFM, UQOR13, FLJ12147, CI-13KD-B) (NDUFA5) pseudogene and six CpG islands, complete sequence Length = 195379 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 aatgtctaagtaaagctgga 262 |||||||||||||||||||| Sbjct: 50110 aatgtctaagtaaagctgga 50129
>gb|AC154216.1| Mus musculus BAC clone RP24-354I21 from 13, complete sequence Length = 209934 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 151 catctcagaagcaaaacaatgtacagattaaa 182 |||||||||||||||| |||||| ||| |||| Sbjct: 59088 catctcagaagcaaaataatgtaaagactaaa 59119
>gb|AC005952.2| Homo sapiens chromosome 19, cosmid F19847, complete sequence Length = 15976 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 acctggaagcaagaatctat 234 |||||||||||||||||||| Sbjct: 6750 acctggaagcaagaatctat 6731
>emb|AL808015.4| Mouse DNA sequence from clone RP23-467C11 on chromosome X, complete sequence Length = 180935 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 taacattaactcaaacatgt 288 |||||||||||||||||||| Sbjct: 77876 taacattaactcaaacatgt 77857
>emb|AL591855.11| Human DNA sequence from clone RP11-4C12 on chromosome 9, complete sequence Length = 153214 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 gacaagcagtacctggaagcaaga 228 |||||||||||| ||||||||||| Sbjct: 91696 gacaagcagtacatggaagcaaga 91719 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,398,925 Number of Sequences: 3902068 Number of extensions: 3398925 Number of successful extensions: 84291 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84144 Number of HSP's gapped (non-prelim): 147 length of query: 353 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 331 effective length of database: 17,147,199,772 effective search space: 5675723124532 effective search space used: 5675723124532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)