ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MSX2_CANFA (Q9GK08) Homeobox protein MSX-2 (Hox-8) 29 5.2
2TR10D_HUMAN (Q9UBN6) Tumor necrosis factor receptor superfamily ... 29 5.2
3MSX2_HUMAN (P35548) Homeobox protein MSX-2 (Hox-8) 28 8.8

>MSX2_CANFA (Q9GK08) Homeobox protein MSX-2 (Hox-8)|
          Length = 267

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 232 SVSRYSSDRRTAKRCAPMAADTAETTSALQPTLAISNGS 348
           SV    SD++  K  +P  AD+A   +AL+P L   +G+
Sbjct: 48  SVEALMSDKKPPKGASPRPADSASAGAALRPLLLPGHGA 86



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>TR10D_HUMAN (Q9UBN6) Tumor necrosis factor receptor superfamily member 10D|
           precursor (Decoy receptor 2) (DcR2) (TNF-related
           apoptosis-inducing ligand receptor 4) (TRAIL receptor 4)
           (TRAIL-R4) (TRAIL receptor with a truncated death
           domain) (CD264 antigen)
          Length = 386

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +1

Query: 193 LRANCGGGGAGVHSVSRYSSDRRTAKRCAPMAADTA--ETTS--ALQPT 327
           L+  C GGG G   V R    RR+     P A D A  ET S   LQPT
Sbjct: 240 LKGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPT 288



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>MSX2_HUMAN (P35548) Homeobox protein MSX-2 (Hox-8)|
          Length = 267

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 232 SVSRYSSDRRTAKRCAPMAADTAETTSALQPTLAISNGS 348
           SV    SD++  K  +P+ A++A   + L+P L   +G+
Sbjct: 48  SVEALMSDKKPPKEASPLPAESASAGATLRPLLLSGHGA 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,572,534
Number of Sequences: 219361
Number of extensions: 786875
Number of successful extensions: 2339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2337
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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