ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25f03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ355219.1| Thinopyrum bessarabicum plastid acetyl-CoA carboxylase gene, partial cds; nuclear gene for plastid product Length = 1542 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 81 gtttgagcgacggttatttctgaacggaggtagta 115 ||||||||||| |||||||||| |||||||||||| Sbjct: 133 gtttgagcgacagttatttctggacggaggtagta 167
>ref|NM_190637.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 345 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 285 ggcggcggacacggccgagacg 306 |||||||||||||||||||||| Sbjct: 18 ggcggcggacacggccgagacg 39
>emb|AL929211.19| Mouse DNA sequence from clone RP23-323P11 on chromosome 2, complete sequence Length = 65494 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 27 atatgtacatatcctcaaatacacac 52 |||||||||||| ||||||||||||| Sbjct: 13916 atatgtacatatactcaaatacacac 13941
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 285 ggcggcggacacggccgagacg 306 |||||||||||||||||||||| Sbjct: 36684954 ggcggcggacacggccgagacg 36684975 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 aacggaggtagtacttggaa 122 |||||||||||||||||||| Sbjct: 12295180 aacggaggtagtacttggaa 12295161
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 285 ggcggcggacacggccgagacg 306 |||||||||||||||||||||| Sbjct: 158220 ggcggcggacacggccgagacg 158241
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 285 ggcggcggacacggccgagacg 306 |||||||||||||||||||||| Sbjct: 11269 ggcggcggacacggccgagacg 11290
>gb|AC115011.27| Mus musculus chromosome 1, clone RP24-192A11, complete sequence Length = 173802 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 gctccagcccaccctggccat 335 ||||||||||||||||||||| Sbjct: 50559 gctccagcccaccctggccat 50539
>gb|BC061635.1| Mus musculus serine/threonine kinase 11 interacting protein, mRNA (cDNA clone MGC:67731 IMAGE:6530178), complete cds Length = 4481 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 gctccagcccaccctggccat 335 ||||||||||||||||||||| Sbjct: 2630 gctccagcccaccctggccat 2650
>gb|BC035530.1| Mus musculus serine/threonine kinase 11 interacting protein, mRNA (cDNA clone IMAGE:5366096), with apparent retained intron Length = 3250 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 gctccagcccaccctggccat 335 ||||||||||||||||||||| Sbjct: 1687 gctccagcccaccctggccat 1707
>gb|BC042403.1| Mus musculus serine/threonine kinase 11 interacting protein, mRNA (cDNA clone IMAGE:3156629) Length = 4168 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 gctccagcccaccctggccat 335 ||||||||||||||||||||| Sbjct: 2684 gctccagcccaccctggccat 2704
>gb|AC127226.3| Mus musculus BAC clone RP24-500I10 from chromosome 6, complete sequence Length = 166743 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 28 tatgtacatatcctcaaatacacac 52 |||||||||||||||||| |||||| Sbjct: 76218 tatgtacatatcctcaaacacacac 76242
>dbj|AK156122.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830008I10 product:serine/threonine kinase 11 interacting protein, full insert sequence Length = 4144 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 gctccagcccaccctggccat 335 ||||||||||||||||||||| Sbjct: 2735 gctccagcccaccctggccat 2755
>ref|NM_027886.2| Mus musculus serine/threonine kinase 11 interacting protein (Stk11ip), mRNA Length = 4481 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 gctccagcccaccctggccat 335 ||||||||||||||||||||| Sbjct: 2630 gctccagcccaccctggccat 2650
>dbj|AK171989.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830028A08 product:serine/threonine kinase 11 interacting protein, full insert sequence Length = 3481 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 gctccagcccaccctggccat 335 ||||||||||||||||||||| Sbjct: 2509 gctccagcccaccctggccat 2529
>dbj|AK165911.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730018C07 product:serine/threonine kinase 11 interacting protein, full insert sequence Length = 4475 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 gctccagcccaccctggccat 335 ||||||||||||||||||||| Sbjct: 2640 gctccagcccaccctggccat 2660
>dbj|AK004757.2| Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200014D22 product:similar to LKB1-INTERACTING PROTEIN 1 [Homo sapiens], full insert sequence Length = 4010 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 gctccagcccaccctggccat 335 ||||||||||||||||||||| Sbjct: 2600 gctccagcccaccctggccat 2620
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 ctctagctacgagctaactgc 207 ||||||||||||||||||||| Sbjct: 27580384 ctctagctacgagctaactgc 27580364
>dbj|AP006454.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1472F02 Length = 55065 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 ctctagctacgagctaactgc 207 ||||||||||||||||||||| Sbjct: 22078 ctctagctacgagctaactgc 22058
>gb|AC102751.14| Mus musculus chromosome 19, clone RP24-531N3, complete sequence Length = 178150 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tcagcaatggctcctccctt 354 |||||||||||||||||||| Sbjct: 27152 tcagcaatggctcctccctt 27133
>gb|AC126549.4| Mus musculus BAC clone RP24-326I12 from chromosome 13, complete sequence Length = 189739 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 324 caccctggccatcagcaatggctc 347 ||||||||| |||||||||||||| Sbjct: 47077 caccctggctatcagcaatggctc 47054
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gatggcggcggacacggccg 301 |||||||||||||||||||| Sbjct: 19392 gatggcggcggacacggccg 19411
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gatggcggcggacacggccg 301 |||||||||||||||||||| Sbjct: 50192 gatggcggcggacacggccg 50211
>ref|XM_742671.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g03120) partial mRNA Length = 795 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 accctggccatcagcaatgg 344 |||||||||||||||||||| Sbjct: 31 accctggccatcagcaatgg 50
>gb|AC018712.5| Homo sapiens BAC clone RP11-343H10 from 2, complete sequence Length = 156833 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gcgggggcggaggcgcaggc 225 |||||||||||||||||||| Sbjct: 16702 gcgggggcggaggcgcaggc 16683
>gb|AC122836.4| Mus musculus BAC clone RP23-188B13 from 7, complete sequence Length = 222390 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cccaccctggccatcagcaa 341 |||||||||||||||||||| Sbjct: 196402 cccaccctggccatcagcaa 196421
>ref|XM_758622.1| Theileria parva strain Muguga chromosome 4 hypothetical protein (TP04_0080) partial mRNA Length = 2358 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 catactatttatactactac 75 |||||||||||||||||||| Sbjct: 187 catactatttatactactac 206
>emb|AL645608.30| Human DNA sequence from clone RP11-54O7 on chromosome 1 Contains three novel genes, a novel gene (MGC45873), a novel gene (DKFZP564C186), a novel gene, a novel gene (DKFZP434H2010), a novel gene (MGC13275), the gene for bHLH factor Hes4 (Hes4), a ribosomal protein L39 (RPL39) pseudogene, a novel gene, the G1P2 gene for interferon alpha-inducible protein (clone IFI-15K), the AGRN gene for agrin, two novel genes and fifteen CpG islands, complete sequence Length = 186759 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gctccagcccaccctggcca 334 |||||||||||||||||||| Sbjct: 185295 gctccagcccaccctggcca 185276
>emb|AL390719.47| Human DNA sequence from clone RP11-465B22 on chromosome 1 Contains a novel gene, a novel gene, a protein tyrosine phosphatase family pseudogene, a novel gene (FLJ20584), a novel gene, a novel gene, a novel gene (FLJ36119) and five CpG islands, complete sequence Length = 130979 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gctccagcccaccctggcca 334 |||||||||||||||||||| Sbjct: 563 gctccagcccaccctggcca 544
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 gcgaaacggtgtgcgccgatggcg 288 |||||||||| ||||||||||||| Sbjct: 1162245 gcgaaacggtatgcgccgatggcg 1162268
>emb|AL031003.1|HS422G23 Human DNA sequence from clone RP3-422G23 on chromosome 6q24 Contains the gene for KIAA1244 protein, a macrophage myristoylated alanine-rich C kinase substrate (MACMARCKS) pseudogene, a pseudogene similar to Mus musculus upregulated during skeletal muscle growth 5 (Usmg5), the gene for chromosome 6 open reading frame 34 (C6orf34) (SOUL) and a CpG island, complete sequence Length = 159344 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 atatgtacatatcctcaaat 46 |||||||||||||||||||| Sbjct: 67213 atatgtacatatcctcaaat 67232
>emb|AL022148.1|HS435A7 Human DNA sequence from clone RP3-435A7 on chromosome Xq22.1-22.3, complete sequence Length = 98067 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 caaactttgagtatatgacc 384 |||||||||||||||||||| Sbjct: 33305 caaactttgagtatatgacc 33286
>emb|X82596.1|RLAAPJQMP R.leguminosarum aapJ, Q, M, P genes and ORF5 Length = 5441 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tgcgccgatggcggcggaca 295 |||||||||||||||||||| Sbjct: 747 tgcgccgatggcggcggaca 728
>emb|AJ849797.1| Drosophila madeirensis partial abd-A gene for abdominal-A, exon 4, line P2-MAD Length = 1279 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849796.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-36 Length = 2106 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849795.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-33 Length = 2105 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849794.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-32 Length = 2088 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849793.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-31 Length = 2066 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849792.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-30 Length = 2104 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849791.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-29 Length = 2104 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849790.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-28 Length = 2110 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849789.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-27 Length = 2105 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849788.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-26 Length = 2099 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849787.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-25 Length = 2105 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849786.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-24 Length = 2094 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849785.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-23 Length = 2087 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849784.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-22 Length = 2106 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849783.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-O3+4-21 Length = 2107 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849782.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-14 Length = 2115 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849780.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-12 Length = 2096 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849779.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-11 Length = 2095 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849778.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-10 Length = 2109 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849777.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-09 Length = 2103 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849776.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-08 Length = 2112 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849775.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-07 Length = 2106 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849774.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-06 Length = 2114 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849773.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-05 Length = 2123 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849772.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-04 Length = 2133 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849771.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-03 Length = 2115 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>emb|AJ849769.1| Drosophila subobscura partial abd-A gene for abdominal-A, exon 4, line P2-Ost-01 Length = 2088 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tggcggcggacacggccgag 303 |||||||||||||||||||| Sbjct: 83 tggcggcggacacggccgag 64
>gb|AC102076.9| Mus musculus chromosome 7, clone RP23-401P12, complete sequence Length = 199219 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cccaccctggccatcagcaa 341 |||||||||||||||||||| Sbjct: 92773 cccaccctggccatcagcaa 92754
>gb|AY483521.1| HIV-1 isolate 98USP1Neca from USA envelope glycoprotein (env) gene, partial cds Length = 602 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 tagtacttggaagtatggtactaa 134 ||||||||||||| |||||||||| Sbjct: 373 tagtacttggaaggatggtactaa 396
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cgaccagcgcgctccagccc 324 |||||||||||||||||||| Sbjct: 4675622 cgaccagcgcgctccagccc 4675603
>dbj|AK080903.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430203I24 product:unclassifiable, full insert sequence Length = 3267 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 caccctggccatcagcaatggctc 347 ||||||||| |||||||||||||| Sbjct: 1228 caccctggctatcagcaatggctc 1251
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ggacacggccgagacgacca 310 |||||||||||||||||||| Sbjct: 1519659 ggacacggccgagacgacca 1519640
>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0426D06 Length = 162173 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 aacggaggtagtacttggaa 122 |||||||||||||||||||| Sbjct: 119806 aacggaggtagtacttggaa 119787
>emb|X94677.1|BHV1ULGNS Bovine herpesvirus type 1 genes for UL[27,28,29,30,31] Length = 10500 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gatggcggcggacacggccg 301 |||||||||||||||||||| Sbjct: 5116 gatggcggcggacacggccg 5135
>emb|AJ272672.1|HIM272672 Human immunodeficiency virus type 1 proviral partial env gene for gp120, isolate 97SE-45HPD Length = 595 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 tagtacttggaagtatggtactaa 134 ||||||||||||| |||||||||| Sbjct: 357 tagtacttggaagaatggtactaa 380
>gb|AC154862.2| Mus musculus BAC clone RP23-8G7 from 13, complete sequence Length = 205028 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 caccctggccatcagcaatggctc 347 ||||||||| |||||||||||||| Sbjct: 20818 caccctggctatcagcaatggctc 20841
>gb|AF487716.1| Aphis gossypii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 2025 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 285 ggcggcggacacggccgagacgaccagcgcgc 316 |||||||| ||||||||| |||||||||||| Sbjct: 1431 ggcggcggcgacggccgaggcgaccagcgcgc 1462
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 cgggggcggaggcgcaggcgtcca 230 ||||||||||||||| |||||||| Sbjct: 215 cgggggcggaggcgctggcgtcca 192
>dbj|AB209681.1| Homo sapiens mRNA for RAP guanine-nucleotide-exchange factor 4 variant protein Length = 6400 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgggggcggaggcgcaggc 225 |||||||||||||||||||| Sbjct: 43 gcgggggcggaggcgcaggc 62 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,114,215 Number of Sequences: 3902068 Number of extensions: 3114215 Number of successful extensions: 86995 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86640 Number of HSP's gapped (non-prelim): 355 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
