ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110964.1| Zea mays CL40819_1 mRNA sequence 147 4e-32
2ref|XM_478167.1| Oryza sativa (japonica cultivar-group), mRNA 125 1e-25
3dbj|AK070976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
4dbj|AK065480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
5dbj|AK061972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
6gb|AF499741.1| Oryza sativa CaM-binding transcription factor (CB... 125 1e-25
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
8dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
9gb|AC163399.6| Mus musculus chromosome 18, clone RP24-66G13, com... 40 6.0
10gb|DQ193353.1| Homo sapiens 228-17 HIV-1 integration site genomi... 40 6.0
11emb|Z80107.2|HS197J16 Human DNA sequence from clone RP1-197J16 o... 40 6.0
12emb|Z99260.2|SPAC3A11 S.pombe chromosome I cosmid c3A11 40 6.0
13gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, co... 40 6.0
14emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.0
15emb|AL669842.11| Mouse DNA sequence from clone RP23-25D18 on chr... 40 6.0
16ref|NM_001019618.1| Schizosaccharomyces pombe 972h- hypothetical... 40 6.0
17gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, com... 40 6.0
18gb|AC007066.4|AC007066 Homo sapiens chromosome 9, clone hRPK.355... 40 6.0
19gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.0
20gb|BC029161.1| Mus musculus netrin 1, mRNA (cDNA clone IMAGE:495... 40 6.0
21gb|BC019633.1| Mus musculus netrin 1, mRNA (cDNA clone IMAGE:367... 40 6.0
22gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, compl... 40 6.0
23gb|U38845.1|ATU38845 Arabidopsis thaliana nitrilase 2 (NIT2) and... 40 6.0 
>gb|AY110964.1| Zea mays CL40819_1 mRNA sequence
          Length = 745

 Score =  147 bits (74), Expect = 4e-32
 Identities = 113/126 (89%)
 Strand = Plus / Plus

                                                                       
Query: 316 gaactccagcttggcctcctcatgagcaatcctcatcctccggtactcatgctgtgcccg 375
           |||||||| |||||||||||||||||||| | | |||||||||||||| ||||| |||||
Sbjct: 433 gaactccaccttggcctcctcatgagcaaccttaatcctccggtactcctgctgcgcccg 492

                                                                       
Query: 376 atgacaacgaaacagagcctgaacacgtaccactgatctattaaacctgtcctccgcttg 435
           |||| |||| |||| ||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 493 atgagaacggaacaaagcttggacacgtaccactgatctattgaacctgtcctcggcttg 552

                 
Query: 436 ttgccg 441
           ||||||
Sbjct: 553 ttgccg 558
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>ref|XM_478167.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3174

 Score =  125 bits (63), Expect = 1e-25
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                        
Query: 303  gctgctctttactgaactccagcttggcctcctcatgagcaatcctcatcctccggtact 362
            ||||| ||| ||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct: 2811 gctgcccttcactgaactcaatcttggcctcctcatgagcaatcttcatcctccggtact 2752

                                                                        
Query: 363  catgctgtgcccgatgacaacgaaacagagcctgaacacgtaccactgatctattaaacc 422
            | || ||||||   | | |||| ||||| || ||||| || ||||| |||||||| ||||
Sbjct: 2751 cctgttgtgccttgtaagaacggaacagggcttgaacgcgaaccacagatctattgaacc 2692

                                       
Query: 423  tgtcctccgcttgttgccggctggcct 449
            ||||||| ||||||||||||| |||||
Sbjct: 2691 tgtcctcggcttgttgccggccggcct 2665



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 182  atcaatcagatggtcctaaaatgta 206
            |||| ||||||||||||||||||||
Sbjct: 2946 atcattcagatggtcctaaaatgta 2922
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>dbj|AK070976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E17, full
            insert sequence
          Length = 3174

 Score =  125 bits (63), Expect = 1e-25
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                        
Query: 303  gctgctctttactgaactccagcttggcctcctcatgagcaatcctcatcctccggtact 362
            ||||| ||| ||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct: 2811 gctgcccttcactgaactcaatcttggcctcctcatgagcaatcttcatcctccggtact 2752

                                                                        
Query: 363  catgctgtgcccgatgacaacgaaacagagcctgaacacgtaccactgatctattaaacc 422
            | || ||||||   | | |||| ||||| || ||||| || ||||| |||||||| ||||
Sbjct: 2751 cctgttgtgccttgtaagaacggaacagggcttgaacgcgaaccacagatctattgaacc 2692

                                       
Query: 423  tgtcctccgcttgttgccggctggcct 449
            ||||||| ||||||||||||| |||||
Sbjct: 2691 tgtcctcggcttgttgccggccggcct 2665



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 182  atcaatcagatggtcctaaaatgta 206
            |||| ||||||||||||||||||||
Sbjct: 2946 atcattcagatggtcctaaaatgta 2922
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>dbj|AK065480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025F20, full
            insert sequence
          Length = 3001

 Score =  125 bits (63), Expect = 1e-25
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                        
Query: 303  gctgctctttactgaactccagcttggcctcctcatgagcaatcctcatcctccggtact 362
            ||||| ||| ||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct: 2641 gctgcccttcactgaactcaatcttggcctcctcatgagcaatcttcatcctccggtact 2582

                                                                        
Query: 363  catgctgtgcccgatgacaacgaaacagagcctgaacacgtaccactgatctattaaacc 422
            | || ||||||   | | |||| ||||| || ||||| || ||||| |||||||| ||||
Sbjct: 2581 cctgttgtgccttgtaagaacggaacagggcttgaacgcgaaccacagatctattgaacc 2522

                                       
Query: 423  tgtcctccgcttgttgccggctggcct 449
            ||||||| ||||||||||||| |||||
Sbjct: 2521 tgtcctcggcttgttgccggccggcct 2495



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 182  atcaatcagatggtcctaaaatgta 206
            |||| ||||||||||||||||||||
Sbjct: 2776 atcattcagatggtcctaaaatgta 2752
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>dbj|AK061972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H08, full
            insert sequence
          Length = 1853

 Score =  125 bits (63), Expect = 1e-25
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                        
Query: 303  gctgctctttactgaactccagcttggcctcctcatgagcaatcctcatcctccggtact 362
            ||||| ||| ||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct: 1522 gctgcccttcactgaactcaatcttggcctcctcatgagcaatcttcatcctccggtact 1463

                                                                        
Query: 363  catgctgtgcccgatgacaacgaaacagagcctgaacacgtaccactgatctattaaacc 422
            | || ||||||   | | |||| ||||| || ||||| || ||||| |||||||| ||||
Sbjct: 1462 cctgttgtgccttgtaagaacggaacagggcttgaacgcgaaccacagatctattgaacc 1403

                                       
Query: 423  tgtcctccgcttgttgccggctggcct 449
            ||||||| ||||||||||||| |||||
Sbjct: 1402 tgtcctcggcttgttgccggccggcct 1376



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 182  atcaatcagatggtcctaaaatgta 206
            |||| ||||||||||||||||||||
Sbjct: 1657 atcattcagatggtcctaaaatgta 1633
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>gb|AF499741.1| Oryza sativa CaM-binding transcription factor (CBT) mRNA, complete
            cds
          Length = 3134

 Score =  125 bits (63), Expect = 1e-25
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                        
Query: 303  gctgctctttactgaactccagcttggcctcctcatgagcaatcctcatcctccggtact 362
            ||||| ||| ||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct: 2787 gctgcccttcactgaactcaatcttggcctcctcatgagcaatcttcatcctccggtact 2728

                                                                        
Query: 363  catgctgtgcccgatgacaacgaaacagagcctgaacacgtaccactgatctattaaacc 422
            | || ||||||   | | |||| ||||| || ||||| || ||||| |||||||| ||||
Sbjct: 2727 cctgttgtgccttgtaagaacggaacagggcttgaacgcgaaccacagatctattgaacc 2668

                                       
Query: 423  tgtcctccgcttgttgccggctggcct 449
            ||||||| ||||||||||||| |||||
Sbjct: 2667 tgtcctcggcttgttgccggccggcct 2641



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 182  atcaatcagatggtcctaaaatgta 206
            |||| ||||||||||||||||||||
Sbjct: 2922 atcattcagatggtcctaaaatgta 2898
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 5e-22
 Identities = 108/125 (86%)
 Strand = Plus / Plus

                                                                            
Query: 325      cttggcctcctcatgagcaatcctcatcctccggtactcatgctgtgcccgatgacaacg 384
                |||||||||||||||||||||| |||||||||||||||| || ||||||   | | ||||
Sbjct: 18152368 cttggcctcctcatgagcaatcttcatcctccggtactcctgttgtgccttgtaagaacg 18152427

                                                                            
Query: 385      aaacagagcctgaacacgtaccactgatctattaaacctgtcctccgcttgttgccggct 444
                 ||||| || ||||| || ||||| |||||||| ||||||||||| ||||||||||||| 
Sbjct: 18152428 gaacagggcttgaacgcgaaccacagatctattgaacctgtcctcggcttgttgccggcc 18152487

                     
Query: 445      ggcct 449
                |||||
Sbjct: 18152488 ggcct 18152492



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 182      atcaatcagatggtcctaaaatgta 206
                |||| ||||||||||||||||||||
Sbjct: 18151929 atcattcagatggtcctaaaatgta 18151953
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>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0477A12
          Length = 138141

 Score =  113 bits (57), Expect = 5e-22
 Identities = 108/125 (86%)
 Strand = Plus / Plus

                                                                         
Query: 325   cttggcctcctcatgagcaatcctcatcctccggtactcatgctgtgcccgatgacaacg 384
             |||||||||||||||||||||| |||||||||||||||| || ||||||   | | ||||
Sbjct: 87674 cttggcctcctcatgagcaatcttcatcctccggtactcctgttgtgccttgtaagaacg 87733

                                                                         
Query: 385   aaacagagcctgaacacgtaccactgatctattaaacctgtcctccgcttgttgccggct 444
              ||||| || ||||| || ||||| |||||||| ||||||||||| ||||||||||||| 
Sbjct: 87734 gaacagggcttgaacgcgaaccacagatctattgaacctgtcctcggcttgttgccggcc 87793

                  
Query: 445   ggcct 449
             |||||
Sbjct: 87794 ggcct 87798



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 182   atcaatcagatggtcctaaaatgta 206
             |||| ||||||||||||||||||||
Sbjct: 87235 atcattcagatggtcctaaaatgta 87259
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>gb|AC163399.6| Mus musculus chromosome 18, clone RP24-66G13, complete sequence
          Length = 173868

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    ccggtactcatgctgtgccc 374
              ||||||||||||||||||||
Sbjct: 128444 ccggtactcatgctgtgccc 128463
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>gb|DQ193353.1| Homo sapiens 228-17 HIV-1 integration site genomic sequence
          Length = 372

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 312 tactgaactccagcttggcctcct 335
           |||||||||||||| |||||||||
Sbjct: 86  tactgaactccagcctggcctcct 109
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>emb|Z80107.2|HS197J16 Human DNA sequence from clone RP1-197J16 on chromosome X Contains a
            histone H2B family pseudogene, a novel pseudogene and a
            NADH dehydrogenase 6 (MTND6) pseudogene, complete
            sequence
          Length = 110715

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 310  tttactgaactccagcttggcctc 333
            |||||||||||||| |||||||||
Sbjct: 6471 tttactgaactccaacttggcctc 6448
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>emb|Z99260.2|SPAC3A11 S.pombe chromosome I cosmid c3A11
          Length = 30562

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   ccagattcggccaaaagcat 183
             ||||||||||||||||||||
Sbjct: 10567 ccagattcggccaaaagcat 10586
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>gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, complete sequence
          Length = 141449

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ggtcattggcccaggtggca 41
             ||||||||||||||||||||
Sbjct: 61226 ggtcattggcccaggtggca 61245
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>emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment 8/24
          Length = 307050

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    caggcaaattgcaaaccacg 136
              ||||||||||||||||||||
Sbjct: 208246 caggcaaattgcaaaccacg 208227
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>emb|AL669842.11| Mouse DNA sequence from clone RP23-25D18 on chromosome 11 Contains
             three novel genes, the 3' end of the Ntn1 gene for netrin
             1 and the 3' end of the Stx8 gene for syntaxin 8, complete
             sequence
          Length = 121134

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   agaaagttgtggattttctt 236
             ||||||||||||||||||||
Sbjct: 63363 agaaagttgtggattttctt 63382
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>ref|NM_001019618.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC3A11.09),
           partial mRNA
          Length = 2280

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 ccagattcggccaaaagcat 183
           ||||||||||||||||||||
Sbjct: 521 ccagattcggccaaaagcat 502
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>gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, complete sequence
          Length = 145042

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ggtcattggcccaggtggca 41
             ||||||||||||||||||||
Sbjct: 41584 ggtcattggcccaggtggca 41565
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>gb|AC007066.4|AC007066 Homo sapiens chromosome 9, clone hRPK.355_O_1, complete sequence
          Length = 190815

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   gttgtggattttcttaatgt 241
             ||||||||||||||||||||
Sbjct: 47815 gttgtggattttcttaatgt 47796
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 290     gccggcgcctgctgctgctc 309
               ||||||||||||||||||||
Sbjct: 4054785 gccggcgcctgctgctgctc 4054804
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>gb|BC029161.1| Mus musculus netrin 1, mRNA (cDNA clone IMAGE:4952261)
          Length = 2585

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  agaaagttgtggattttctt 236
            ||||||||||||||||||||
Sbjct: 2398 agaaagttgtggattttctt 2417
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>gb|BC019633.1| Mus musculus netrin 1, mRNA (cDNA clone IMAGE:3670705), with apparent
            retained intron
          Length = 1357

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  agaaagttgtggattttctt 236
            ||||||||||||||||||||
Sbjct: 1152 agaaagttgtggattttctt 1171
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>gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence
          Length = 140977

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ggtcattggcccaggtggca 41
             ||||||||||||||||||||
Sbjct: 79744 ggtcattggcccaggtggca 79725
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>gb|U38845.1|ATU38845 Arabidopsis thaliana nitrilase 2 (NIT2) and nitrilase 1 (NIT1) genes,
            complete cds
          Length = 7378

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  tggattttcttaatgtacaa 245
            ||||||||||||||||||||
Sbjct: 1351 tggattttcttaatgtacaa 1332


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,266,486
Number of Sequences: 3902068
Number of extensions: 4266486
Number of successful extensions: 78719
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78600
Number of HSP's gapped (non-prelim): 112
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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