ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25f01 |
|---|---|
| Clone Library Name | barley_pub |
>TUB_HUMAN (P50607) Tubby protein homolog| Length = 506 Score = 64.3 bits (155), Expect = 1e-10 Identities = 26/41 (63%), Positives = 35/41 (85%) Frame = -3 Query: 423 VILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 301 +++QFG++ +D+FTMDY YPL A QAFAI L+SFD+K ACE Sbjct: 466 IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506
>TUB_RAT (O88808) Tubby protein homolog| Length = 505 Score = 64.3 bits (155), Expect = 1e-10 Identities = 26/41 (63%), Positives = 35/41 (85%) Frame = -3 Query: 423 VILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 301 +++QFG++ +D+FTMDY YPL A QAFAI L+SFD+K ACE Sbjct: 465 IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
>TUB_MOUSE (P50586) Tubby protein| Length = 505 Score = 64.3 bits (155), Expect = 1e-10 Identities = 26/41 (63%), Positives = 35/41 (85%) Frame = -3 Query: 423 VILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 301 +++QFG++ +D+FTMDY YPL A QAFAI L+SFD+K ACE Sbjct: 465 IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
>TULP2_MOUSE (P46686) Tubby-related protein 2 (Tubby-like protein 2) (P4-6| protein) (Fragment) Length = 564 Score = 63.2 bits (152), Expect = 3e-10 Identities = 27/43 (62%), Positives = 35/43 (81%) Frame = -3 Query: 429 EKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 301 + ++LQFG++ +IFTMD+RYPL QAFAICL+SFD K ACE Sbjct: 522 DHLVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLACE 564
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 63.2 bits (152), Expect = 3e-10 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 423 VILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 301 ++LQFG++ +D FT+DYRYPL A QAFAI L+SFD K ACE Sbjct: 503 IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 543
>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)| Length = 542 Score = 63.2 bits (152), Expect = 3e-10 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -3 Query: 423 VILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 301 ++LQFG++ +D FT+DYRYPL A QAFAI L+SFD K ACE Sbjct: 502 IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 542
>TULP3_HUMAN (O75386) Tubby-related protein 3 (Tubby-like protein 3)| Length = 442 Score = 61.6 bits (148), Expect = 8e-10 Identities = 25/41 (60%), Positives = 34/41 (82%) Frame = -3 Query: 423 VILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 301 +++QFG++ D+FT+DY YPL A QAFAI L+SFD+K ACE Sbjct: 402 IVMQFGRVADDVFTLDYNYPLCAVQAFAISLSSFDSKLACE 442
>TULP3_MOUSE (O88413) Tubby-related protein 3 (Tubby-like protein 3)| Length = 460 Score = 61.2 bits (147), Expect = 1e-09 Identities = 25/41 (60%), Positives = 34/41 (82%) Frame = -3 Query: 423 VILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 301 +++QFG++ D+FT+DY YPL A QAFAI L+SFD+K ACE Sbjct: 420 IVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460
>TUB1_CAEEL (Q09306) Tubby protein homolog 1| Length = 426 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/43 (62%), Positives = 33/43 (76%) Frame = -3 Query: 429 EKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 301 E +++QFG+I D FTMD+RYPLSA QAF I +TSF K ACE Sbjct: 384 EYIVMQFGRISDDEFTMDFRYPLSAVQAFGIAMTSFHGKLACE 426
>TULP2_HUMAN (O00295) Tubby-related protein 2 (Tubby-like protein 2)| Length = 520 Score = 54.3 bits (129), Expect = 1e-07 Identities = 22/38 (57%), Positives = 31/38 (81%) Frame = -3 Query: 432 QEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFD 319 QE ++LQFG++G D FTMD+ +P S QAF+ICL+SF+ Sbjct: 483 QEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
>TULP4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1547 Score = 38.1 bits (87), Expect = 0.009 Identities = 14/32 (43%), Positives = 24/32 (75%) Frame = -3 Query: 420 ILQFGKIGKDIFTMDYRYPLSAFQAFAICLTS 325 ++QFG+I + + +D++YP SA QAFA+ L + Sbjct: 1510 VMQFGRIDGNAYILDFQYPFSAVQAFAVALAN 1541
>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1544 Score = 37.7 bits (86), Expect = 0.012 Identities = 14/32 (43%), Positives = 23/32 (71%) Frame = -3 Query: 420 ILQFGKIGKDIFTMDYRYPLSAFQAFAICLTS 325 ++QFG+I + +D++YP SA QAFA+ L + Sbjct: 1507 VMQFGRIDGSAYILDFQYPFSAVQAFAVALAN 1538
>ARGD_RHILO (Q98BB7) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 399 Score = 31.6 bits (70), Expect = 0.87 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +2 Query: 245 RGR*CLKLAGPVNAAFFGHSQAGLVSKLVRQIAKAWNADNGY 370 +G L AG + GHS LV+ L Q AK W+ N Y Sbjct: 29 KGERYLDFAGGIAVNSLGHSHPHLVAALTEQAAKLWHVSNLY 70
>ARGM_PHOLL (Q7N2G7) Succinylornithine transaminase (EC 2.6.1.-)| (Succinylornithine aminotransferase) (Carbon starvation protein C) Length = 402 Score = 30.8 bits (68), Expect = 1.5 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 248 GR*CLKLAGPVNAAFFGHSQAGLVSKLVRQIAKAWNADNGY 370 G+ + AG + GH+ L +L+ QI K W+ NGY Sbjct: 38 GKEYIDFAGGIAVNSLGHAHPELKDELIYQIDKIWHIGNGY 78
>C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII)| Length = 547 Score = 30.0 bits (66), Expect = 2.5 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 12/73 (16%) Frame = +3 Query: 126 ISLLPHLDPAKLSSI--------YHLPSISPGAASEN*SKDIRI-YTIQGAGNVSS---W 269 ++L PHL A L++I Y + S + A +E+ +R + + GA N S W Sbjct: 210 VALRPHLQAAALNNIMGSVFGTRYDVTSGAGAAEAEHLKSMVREGFELLGAFNWSDHLPW 269 Query: 270 LARLTPPSSVIRR 308 LA L PS+V RR Sbjct: 270 LAHLYDPSNVTRR 282
>HEM1_KLULA (P78698) 5-aminolevulinate synthase, mitochondrial precursor (EC| 2.3.1.37) (5-aminolevulinic acid synthase) (Delta-aminolevulinate synthase) (Delta-ALA synthetase) Length = 570 Score = 30.0 bits (66), Expect = 2.5 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +1 Query: 79 TTVRPNLPGGFAKIRRYHCSHILIRQNYHQSTTY 180 TT+ P + G A+ RY SH+ +RQ+ + TTY Sbjct: 389 TTLPPAVMAGAAEAIRYQRSHLDLRQDQQRHTTY 422
>ARGD_XYLFT (Q87DM8) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 411 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +2 Query: 245 RGR*CLKLAGPVNAAFFGHSQAGLVSKLVRQIAKAWNADN 364 +GR L LA + GH LV+ LV Q + W+ N Sbjct: 38 QGRDYLDLAAGIAVCCLGHCDPDLVAALVEQAGRLWHTSN 77
>ARGD_XYLFA (Q9PDF2) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 411 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +2 Query: 245 RGR*CLKLAGPVNAAFFGHSQAGLVSKLVRQIAKAWNADN 364 +GR L LA + GH LV+ LV Q + W+ N Sbjct: 38 QGRDYLDLAAGIAVCCLGHCDPDLVAALVEQAGRLWHTSN 77
>EF1A_AURPU (Q00251) Elongation factor 1-alpha (EF-1-alpha)| Length = 459 Score = 28.9 bits (63), Expect = 5.7 Identities = 9/23 (39%), Positives = 11/23 (47%) Frame = -1 Query: 248 PLDGVNSDIFASILGRCPWGDGW 180 P+ G N D + CPW GW Sbjct: 190 PISGFNGDNMIEVSSNCPWYKGW 212
>ARGM_YERPE (Q8D0D7) Succinylornithine transaminase (EC 2.6.1.-)| (Succinylornithine aminotransferase) Length = 414 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = +2 Query: 245 RGR*CLKLAGPVNAAFFGHSQAGLVSKLVRQIAKAWNADNGY 370 +G+ + AG + GH + + L+ Q K W+ NGY Sbjct: 39 QGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGY 80
>ARGD_XANAC (Q8PH31) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 408 Score = 28.5 bits (62), Expect = 7.4 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = +2 Query: 182 IHLPRGSVRELKQRYQNLHHPRGR*CLKLAGPVNAAFFGHSQAGLVSKLVRQIAKAWNAD 361 ++ PR V E Q + GR L L+ + + GH+ LV+ L Q K W+ Sbjct: 18 VYRPRQVVLERGQG-SRVWDDAGREYLDLSSGIAVSGLGHNDPDLVAALTEQAGKLWHTS 76 Query: 362 N 364 N Sbjct: 77 N 77
>BTUB_VIBCH (Q9KVI9) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 611 Score = 28.5 bits (62), Expect = 7.4 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = -2 Query: 337 LPD*LRHQTGLRMTEEGGVNR-ASQLETLPAPWMV*ILISLLQFSDAAPGEMD 182 LP+ LR TG+++T+ GG + AS + V +L+ ++F+ AA G +D Sbjct: 65 LPELLRRLTGVQITQNGGRGQLASLFVRGTSSDQVLVLVDGIRFARAAKGAVD 117
>VPG_BYDV1 (P29046) Putative genome-linked protein precursor (VPG) (17 kDa| protein) Length = 154 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +1 Query: 148 IRQNYHQSTTYHPSPQGQ 201 +R +Y QSTT P+PQGQ Sbjct: 48 LRYSYSQSTTLRPTPQGQ 65
>ARGD_XANCP (Q8P5Q4) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 408 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = +2 Query: 182 IHLPRGSVRELKQRYQNLHHPRGR*CLKLAGPVNAAFFGHSQAGLVSKLVRQIAKAWNAD 361 ++ PR V E Q + +GR L L+ + + GH+ L++ L Q K W+ Sbjct: 18 VYRPRQVVLERGQG-SRVWDDQGREYLDLSSGIAVSGLGHNDPDLMAALTEQAGKLWHTS 76 Query: 362 N 364 N Sbjct: 77 N 77
>TAT_SIVCZ (P17285) TAT protein (Transactivating regulatory protein)| Length = 100 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 104 PGRFGRTVVSDCYVXXXXXLECLAVTYHCLY 12 PG RTV ++CY C A YHC+Y Sbjct: 14 PGSQPRTVCNNCY--------CKACCYHCIY 36
>DPOL_BPAPS (Q9T1Q3) Probable DNA polymerase (EC 2.7.7.7) (P45)| Length = 993 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = +3 Query: 69 AVAYNSSPKSSWGVCQDTEI--SLLPHLDPAKLSSIYH 176 A AYN +P W V QD + L +LD +++ +++H Sbjct: 34 AYAYNHAPVKVWDVTQDKTMPADLKAYLDDSEILTVWH 71
>DHE3_VITVI (P52596) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)| Length = 411 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 234 YTIQGAGNVSSWLARL 281 + IQG GNV SW+ARL Sbjct: 209 FVIQGFGNVGSWVARL 224
>ARUC_PSEAE (O30508) Acetylornithine aminotransferase/succinylornithine| transaminase (EC 2.6.1.11) (EC 2.6.1.-) (Succinylornithine aminotransferase) (ACOAT) (SOAT) Length = 406 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/39 (30%), Positives = 17/39 (43%) Frame = +2 Query: 248 GR*CLKLAGPVNAAFFGHSQAGLVSKLVRQIAKAWNADN 364 GR + AG + GH+ LV L Q + W+ N Sbjct: 41 GRELIDFAGGIAVTSLGHAHPALVKALTEQAQRIWHVSN 79
>GIDA_BARHE (Q6G1K9) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 622 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = +1 Query: 136 SHILIRQNYHQSTTYHPSPQGQRPR----IEAKISEFTPSKG 249 +H +IR+N H+S Y + +G PR IE KI +F G Sbjct: 247 THQIIRENIHRSALYSGNIEGLGPRYCPSIEDKIVKFGERDG 288
>XKDO_BACSU (P54334) Phage-like element PBSX protein xkdO| Length = 1332 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = +2 Query: 167 NLPPTIHLPRGSVRELKQRYQNLHHPRGR*CLKLAGPVNAAFFGHSQAGLVSKLVRQIAK 346 N+ IH ++ +K RY ++ + G LK GP + G++ GL++K QIA+ Sbjct: 1164 NIRNPIHNAAAAIGYIKSRYGSIDNVPGIKSLKRGGP----YVGYANGGLITK--EQIAR 1217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,893,627 Number of Sequences: 219361 Number of extensions: 1402705 Number of successful extensions: 3766 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3765 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
