ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25e11 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 42.0 bits (97), Expect = 8e-04 Identities = 26/63 (41%), Positives = 34/63 (53%) Frame = -2 Query: 467 GMQLCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEVS 288 GMQ CE ++ V N SH L+GVY GG +LVR L+ V M++ VRS + Sbjct: 806 GMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQVTVRSKERTPV 863 Query: 287 DKI 279 D I Sbjct: 864 DVI 866
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 40.0 bits (92), Expect = 0.003 Identities = 24/63 (38%), Positives = 34/63 (53%) Frame = -2 Query: 467 GMQLCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEVS 288 GMQ CE ++ V N SH L+G++ GG +LVR L+ V M++ VRS + Sbjct: 806 GMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQVTVRSKERTPV 863 Query: 287 DKI 279 D I Sbjct: 864 DVI 866
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 38.1 bits (87), Expect = 0.011 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -2 Query: 467 GMQLCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLS-GPKEVAMKLAVRSDDPEV 291 G+ CE ++ V H LSGV+ GG VL + + + +AM + ++S++P V Sbjct: 802 GLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKSNEPLV 861 Query: 290 SDKI 279 +D + Sbjct: 862 ADLV 865
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 36.2 bits (82), Expect = 0.043 Identities = 21/56 (37%), Positives = 30/56 (53%) Frame = -2 Query: 467 GMQLCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDD 300 GM CE ++ V N +H LL+GV+ GG +LVR L V M++ RS + Sbjct: 809 GMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLL--DTVTMQVTARSSE 862
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 35.4 bits (80), Expect = 0.073 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -2 Query: 467 GMQLCEGTEVVSSNARSHVCLLSGVYIGGVKVLVR 363 GM CE ++ V N +H LL+GV+ GG +LVR Sbjct: 809 GMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>ERA_DEIRA (Q9RWM0) GTP-binding protein era homolog| Length = 311 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +1 Query: 298 GSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTPDSRHTCDLALLDT 438 G S L +F+ T + P SP TR IYT D+R L +DT Sbjct: 29 GKSTLLNAFLGTKVAPTSPRPQTTRRGVRGIYTLDNR---QLIFVDT 72
>HN_PI3HW (P12565) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 289 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 438 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGTITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>FLIR_BORBU (Q44907) Flagellar biosynthetic protein fliR| Length = 269 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +2 Query: 2 FFLSIHHNIFHLRQSMLKNQLCNERLSSSNAWSEEHSVKHQRINRYTFLTKLKTIFFL 175 FF++I N+FHL NQ+ + + +SEE S+ +I Y FL + FL Sbjct: 89 FFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFAYLFLLLFLSSDFL 146
>HN_PI3HX (P12566) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 289 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 438 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HV (P12564) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 289 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 438 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HU (P12563) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 289 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 438 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HT (P12562) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 289 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 438 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HA (P12561) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 289 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 438 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3H4 (P08492) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 289 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 438 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3B (P06167) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 289 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIY----TPDSRHTCDLALLDT 438 +T G D+ S+ +G ++ N +L P + D+R +C LALL+T Sbjct: 210 ITQGCQDIGKSYQVLQIGIITINSDLVPDLNPRVTHTFNIDDNRKSCSLALLNT 263
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 398 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 291 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 398 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 291 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 398 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 291 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 398 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 291 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 398 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 291 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 398 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 291 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>CLN3_MACFA (Q60HH0) Protein CLN3 (Battenin)| Length = 438 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 253 FYPLATISWILSLTSGSSDLTA-SFIATSLGPLSPNDNL 366 FYP A ISW S T G+ L A S++ + LSP L Sbjct: 175 FYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTL 213
>CLN3_HUMAN (Q13286) Protein CLN3 (Battenin) (Batten disease protein)| Length = 438 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 253 FYPLATISWILSLTSGSSDLTA-SFIATSLGPLSPNDNL 366 FYP A ISW S T G+ L A S++ + LSP L Sbjct: 175 FYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTL 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,988,971 Number of Sequences: 219361 Number of extensions: 1154908 Number of successful extensions: 3001 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2941 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3001 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
