ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111118.1| Zea mays CL34363_1 mRNA sequence 58 2e-05
2ref|XM_450998.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
6dbj|AK058514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
7ref|XM_725659.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 44 0.36
8emb|CR846094.7| Zebrafish DNA sequence from clone CH211-264F16 i... 42 1.4
9gb|AC164010.2| Mus musculus chromosome 18, clone RP24-391C15, co... 42 1.4
10gb|AC109243.10| Mus musculus chromosome 18, clone RP23-139O19, c... 42 1.4
11emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chr... 42 1.4
12gb|AC146227.2| Pan troglodytes BAC clone RP43-32J19 from 7, comp... 40 5.7
13gb|AC004935.1| Homo sapiens PAC clone RP5-953F6 from 7, complete... 40 5.7
14dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 5.7
15gb|AC027312.4| Homo sapiens chromosome 5 clone CTC-265N9, comple... 40 5.7
16gb|S79346.1| tie=receptor tyrosine kinase {promoter} [mice, 129S... 40 5.7
17emb|BX072577.14| Zebrafish DNA sequence from clone CH211-151G22 ... 40 5.7
18gb|AY817188.1| Astyanax scabripinnis alpha tropomyosin (trop) ge... 40 5.7
19emb|AL928946.17| Zebrafish DNA sequence from clone CH211-265D20 ... 40 5.7
20emb|AL627212.21| Mouse DNA sequence from clone RP23-145E1 on chr... 40 5.7 
>gb|AY111118.1| Zea mays CL34363_1 mRNA sequence
          Length = 565

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 332 ttgcaccacacgcatacggattggagcacgccaaccatctt 372
           |||||||||||||| || |||||||||| ||||||||||||
Sbjct: 74  ttgcaccacacgcacacagattggagcatgccaaccatctt 34
to top
>ref|XM_450998.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1715

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 372  tggacaggtcccaacctaactggaccggagggcagctcccaa 413
            |||||| |||||| ||||||||||| ||||||||||| ||||
Sbjct: 1248 tggacatgtcccatcctaactggacaggagggcagctgccaa 1207



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 114/143 (79%), Gaps = 6/143 (4%)
 Strand = Plus / Minus

                                                                        
Query: 203  gaatgctaaagc---gatgaaccattgttgagtatgcgaagatgactggatgtcttgtcc 259
            ||||||||||||   |||||||  |||||||| |||| ||||||||  ||  | || |||
Sbjct: 1438 gaatgctaaagctgtgatgaactgttgttgagcatgctaagatgaccagagattttctcc 1379

                                                                        
Query: 260  ttgcacgtggggcaaatgaagccaacagagtcattctgctgctcggca---gtgccaaaa 316
            |||||||  || || ||||||||||  || |||  |||||| ||||||   |||||||||
Sbjct: 1378 ttgcacgccggacagatgaagccaagtgaatcagcctgctgatcggcaacggtgccaaaa 1319

                                   
Query: 317  tgctggaaccttgtgttgcacca 339
            |||||||||   |||||||||||
Sbjct: 1318 tgctggaactgagtgttgcacca 1296
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 372      tggacaggtcccaacctaactggaccggagggcagctcccaa 413
                |||||| |||||| ||||||||||| ||||||||||| ||||
Sbjct: 18031372 tggacatgtcccatcctaactggacaggagggcagctgccaa 18031413



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 114/143 (79%), Gaps = 6/143 (4%)
 Strand = Plus / Plus

                                                                            
Query: 203      gaatgctaaagc---gatgaaccattgttgagtatgcgaagatgactggatgtcttgtcc 259
                ||||||||||||   |||||||  |||||||| |||| ||||||||  ||  | || |||
Sbjct: 18031182 gaatgctaaagctgtgatgaactgttgttgagcatgctaagatgaccagagattttctcc 18031241

                                                                            
Query: 260      ttgcacgtggggcaaatgaagccaacagagtcattctgctgctcggca---gtgccaaaa 316
                |||||||  || || ||||||||||  || |||  |||||| ||||||   |||||||||
Sbjct: 18031242 ttgcacgccggacagatgaagccaagtgaatcagcctgctgatcggcaacggtgccaaaa 18031301

                                       
Query: 317      tgctggaaccttgtgttgcacca 339
                |||||||||   |||||||||||
Sbjct: 18031302 tgctggaactgagtgttgcacca 18031324
to top
>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0026C08
          Length = 155316

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 372   tggacaggtcccaacctaactggaccggagggcagctcccaa 413
             |||||| |||||| ||||||||||| ||||||||||| ||||
Sbjct: 24494 tggacatgtcccatcctaactggacaggagggcagctgccaa 24535



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 114/143 (79%), Gaps = 6/143 (4%)
 Strand = Plus / Plus

                                                                         
Query: 203   gaatgctaaagc---gatgaaccattgttgagtatgcgaagatgactggatgtcttgtcc 259
             ||||||||||||   |||||||  |||||||| |||| ||||||||  ||  | || |||
Sbjct: 24304 gaatgctaaagctgtgatgaactgttgttgagcatgctaagatgaccagagattttctcc 24363

                                                                         
Query: 260   ttgcacgtggggcaaatgaagccaacagagtcattctgctgctcggca---gtgccaaaa 316
             |||||||  || || ||||||||||  || |||  |||||| ||||||   |||||||||
Sbjct: 24364 ttgcacgccggacagatgaagccaagtgaatcagcctgctgatcggcaacggtgccaaaa 24423

                                    
Query: 317   tgctggaaccttgtgttgcacca 339
             |||||||||   |||||||||||
Sbjct: 24424 tgctggaactgagtgttgcacca 24446
to top
>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1509_C06
          Length = 113436

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 372   tggacaggtcccaacctaactggaccggagggcagctcccaa 413
             |||||| |||||| ||||||||||| ||||||||||| ||||
Sbjct: 83026 tggacatgtcccatcctaactggacaggagggcagctgccaa 83067



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 114/143 (79%), Gaps = 6/143 (4%)
 Strand = Plus / Plus

                                                                         
Query: 203   gaatgctaaagc---gatgaaccattgttgagtatgcgaagatgactggatgtcttgtcc 259
             ||||||||||||   |||||||  |||||||| |||| ||||||||  ||  | || |||
Sbjct: 82836 gaatgctaaagctgtgatgaactgttgttgagcatgctaagatgaccagagattttctcc 82895

                                                                         
Query: 260   ttgcacgtggggcaaatgaagccaacagagtcattctgctgctcggca---gtgccaaaa 316
             |||||||  || || ||||||||||  || |||  |||||| ||||||   |||||||||
Sbjct: 82896 ttgcacgccggacagatgaagccaagtgaatcagcctgctgatcggcaacggtgccaaaa 82955

                                    
Query: 317   tgctggaaccttgtgttgcacca 339
             |||||||||   |||||||||||
Sbjct: 82956 tgctggaactgagtgttgcacca 82978
to top
>dbj|AK058514.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G11, full
            insert sequence
          Length = 1715

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 372  tggacaggtcccaacctaactggaccggagggcagctcccaa 413
            |||||| |||||| ||||||||||| ||||||||||| ||||
Sbjct: 1248 tggacatgtcccatcctaactggacaggagggcagctgccaa 1207



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 114/143 (79%), Gaps = 6/143 (4%)
 Strand = Plus / Minus

                                                                        
Query: 203  gaatgctaaagc---gatgaaccattgttgagtatgcgaagatgactggatgtcttgtcc 259
            ||||||||||||   |||||||  |||||||| |||| ||||||||  ||  | || |||
Sbjct: 1438 gaatgctaaagctgtgatgaactgttgttgagcatgctaagatgaccagagattttctcc 1379

                                                                        
Query: 260  ttgcacgtggggcaaatgaagccaacagagtcattctgctgctcggca---gtgccaaaa 316
            |||||||  || || ||||||||||  || |||  |||||| ||||||   |||||||||
Sbjct: 1378 ttgcacgccggacagatgaagccaagtgaatcagcctgctgatcggcaacggtgccaaaa 1319

                                   
Query: 317  tgctggaaccttgtgttgcacca 339
            |||||||||   |||||||||||
Sbjct: 1318 tgctggaactgagtgttgcacca 1296
to top
>ref|XM_725659.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02823)
            partial mRNA
          Length = 1557

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 186  aaacagcatcagagatcgaatg 207
            ||||||||||||||||||||||
Sbjct: 1549 aaacagcatcagagatcgaatg 1528
to top
>emb|CR846094.7| Zebrafish DNA sequence from clone CH211-264F16 in linkage group 24,
             complete sequence
          Length = 175626

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 179   atgatgaaaacagcatcagag 199
             |||||||||||||||||||||
Sbjct: 90275 atgatgaaaacagcatcagag 90255
to top
>gb|AC164010.2| Mus musculus chromosome 18, clone RP24-391C15, complete sequence
          Length = 162585

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   ctagctctggttccagtctac 135
             |||||||||||||||||||||
Sbjct: 22963 ctagctctggttccagtctac 22943
to top
>gb|AC109243.10| Mus musculus chromosome 18, clone RP23-139O19, complete sequence
          Length = 186687

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ctagctctggttccagtctac 135
              |||||||||||||||||||||
Sbjct: 111474 ctagctctggttccagtctac 111454
to top
>emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chromosome 2, complete
             sequence
          Length = 209502

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 269   gggcaaatgaagccaacagagtcat 293
             |||||||||||||| ||||||||||
Sbjct: 87874 gggcaaatgaagcctacagagtcat 87850
to top
>gb|AC146227.2| Pan troglodytes BAC clone RP43-32J19 from 7, complete sequence
          Length = 181835

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    atatgatgaaaacagcatca 196
              ||||||||||||||||||||
Sbjct: 143202 atatgatgaaaacagcatca 143221
to top
>gb|AC004935.1| Homo sapiens PAC clone RP5-953F6 from 7, complete sequence
          Length = 98935

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   atatgatgaaaacagcatca 196
             ||||||||||||||||||||
Sbjct: 60198 atatgatgaaaacagcatca 60217
to top
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 83      caacgtaaccaccgcacaca 102
               ||||||||||||||||||||
Sbjct: 1923290 caacgtaaccaccgcacaca 1923271
to top
>gb|AC027312.4| Homo sapiens chromosome 5 clone CTC-265N9, complete sequence
          Length = 126036

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   aaatgaagccaacagagtca 292
             ||||||||||||||||||||
Sbjct: 55421 aaatgaagccaacagagtca 55440
to top
>gb|S79346.1| tie=receptor tyrosine kinase {promoter} [mice, 129SV, liver,
           Genomic, 883 nt]
          Length = 883

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  gcacacacactagaatttgc 115
           ||||||||||||||||||||
Sbjct: 178 gcacacacactagaatttgc 159
to top
>emb|BX072577.14| Zebrafish DNA sequence from clone CH211-151G22 in linkage group 21,
             complete sequence
          Length = 160341

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tatgatgaaaacagcatcag 197
             ||||||||||||||||||||
Sbjct: 39078 tatgatgaaaacagcatcag 39059
to top
>gb|AY817188.1| Astyanax scabripinnis alpha tropomyosin (trop) gene, partial
           sequence
          Length = 284

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  cgtaaccaccgcacacacac 105
           ||||||||||||||||||||
Sbjct: 122 cgtaaccaccgcacacacac 103
to top
>emb|AL928946.17| Zebrafish DNA sequence from clone CH211-265D20 in linkage group 20,
              complete sequence
          Length = 157379

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    tatgatgaaaacagcatcag 197
              ||||||||||||||||||||
Sbjct: 104805 tatgatgaaaacagcatcag 104824
to top
>emb|AL627212.21| Mouse DNA sequence from clone RP23-145E1 on chromosome 4, complete
              sequence
          Length = 207362

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     gcacacacactagaatttgc 115
              ||||||||||||||||||||
Sbjct: 177641 gcacacacactagaatttgc 177660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,072,963
Number of Sequences: 3902068
Number of extensions: 3072963
Number of successful extensions: 50103
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50037
Number of HSP's gapped (non-prelim): 66
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top