ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25e01 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 32.7 bits (73), Expect = 0.21 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 385 QEKAKKERLRLWQYGDVESDEEEQ 314 QE AK RL LW+YGD +D+ ++ Sbjct: 881 QESAKSARLNLWRYGDFRADDADE 904
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 32.7 bits (73), Expect = 0.21 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 385 QEKAKKERLRLWQYGDVESDEEEQ 314 QE AK RL LW+YGD +D+ ++ Sbjct: 882 QESAKSARLNLWRYGDFRADDADE 905
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 32.7 bits (73), Expect = 0.21 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 385 QEKAKKERLRLWQYGDVESDEEEQ 314 QE AK RL LW+YGD +D+ ++ Sbjct: 882 QESAKSARLNLWRYGDFRADDADE 905
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 32.7 bits (73), Expect = 0.21 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 385 QEKAKKERLRLWQYGDVESDEEEQ 314 QE AK RL LW+YGD +D+ ++ Sbjct: 882 QESAKSARLNLWRYGDFRADDADE 905
>Y1356_MYCBO (P64806) Hypothetical protein Mb1356| Length = 98 Score = 31.6 bits (70), Expect = 0.47 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -1 Query: 299 ETPPASVDERRQWHAQSWFRYESFGPRAK 213 + P A VD+RR WH W + GP K Sbjct: 68 DLPQAGVDDRRHWHTPCWANRATRGPTRK 96
>Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1| Length = 98 Score = 31.6 bits (70), Expect = 0.47 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -1 Query: 299 ETPPASVDERRQWHAQSWFRYESFGPRAK 213 + P A VD+RR WH W + GP K Sbjct: 68 DLPQAGVDDRRHWHTPCWANRATRGPTRK 96
>SYNJ2_RAT (O55207) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Frame = -2 Query: 406 LENLEQFQEKAKKERLR-LWQYGD---VESDEEEQAXXXXXXXXXX*TKEGSGMRSHGLD 239 LE +F E + E ++ L YG V ++ + + GM+ G Sbjct: 918 LEERNEFPEDLRTELMQTLGNYGTIILVRINQGQMLVTFADSHSALSVLDVDGMKVKGRA 977 Query: 238 MKVLDPERNSVESLYENLVRKRD 170 +K+ ++ +E L E L+RKRD Sbjct: 978 VKIRPKTKDWLEGLREELIRKRD 1000
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1 Query: 265 CLLSSTDAGGVSSRLELALPRRIQ 336 C S TD G +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>SYNJ2_MOUSE (Q9D2G5) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1434 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Frame = -2 Query: 406 LENLEQFQEKAKKERLR-LWQYGD---VESDEEEQAXXXXXXXXXX*TKEGSGMRSHGLD 239 LE +F E + E ++ L YG V ++ + + GM+ G Sbjct: 901 LEEKNEFPEDLRTELMQTLGNYGTIILVRINQGQMLVTFADSHSALSVLDVDGMKVKGRA 960 Query: 238 MKVLDPERNSVESLYENLVRKRD 170 +K+ ++ +E L E L+RKRD Sbjct: 961 VKIRPKTKDWLEGLREELLRKRD 983
>ZN622_MOUSE (Q91VY9) Zinc finger protein 622| Length = 476 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = -2 Query: 397 LEQFQEKAKKERLRLWQYGDVESDEEEQ 314 L+ F+++AKK + W+ G+ E +EEE+ Sbjct: 179 LQWFEQQAKKLAKQQWEDGEEEGEEEEE 206
>MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1499 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -2 Query: 259 MRSHGLDMKVLDPERNSVESLYENLVRKRDYIY 161 +R HG+ + L+P N+++S EN R +D +Y Sbjct: 942 IRQHGMTLSQLEPIANTLQSDPENYERLKDDLY 974
>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)| Length = 3336 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 8/95 (8%) Frame = -2 Query: 406 LENLEQFQEKAKKERLRLWQYGDVESDEEEQAXXXXXXXXXX*TKEGSGMRSHG------ 245 L+ Q Q ++E RLW G+ + + E TKE S R Sbjct: 1372 LQQAAQEQAALREECTRLWSRGEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSA 1431 Query: 244 --LDMKVLDPERNSVESLYENLVRKRDYIYAIRRR 146 MK+L+ E S + ++ + + A+ ++ Sbjct: 1432 LLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQ 1466
>ATG11_ASPFU (Q4WY31) Autophagy-related protein 11| Length = 1264 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%) Frame = -2 Query: 391 QFQEKAKKERLRLWQYGDVESDEEEQA------XXXXXXXXXX*TKEGSGMRSHGLDMKV 230 +F EK K + L L + V DEE++ T G + GLD + Sbjct: 361 EFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGDFISLTETTTPGVEINLQGLDYEW 420 Query: 229 LDPERNSVESLYENL 185 + RN +ES E+L Sbjct: 421 PEVSRNDIESYIEHL 435
>GHRL_ONCMY (Q76IQ4) Ghrelin precursor [Contains: Ghrelin-23; Ghrelin-24]| Length = 111 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -3 Query: 366 KGCACGSMETLNPTRKSKLQAG-GDPPRVGRR 274 K + GS L+P++K +++ G G PPRVGRR Sbjct: 22 KSVSAGS-SFLSPSQKPQVRQGKGKPPRVGRR 52
>SYNJ2_HUMAN (O15056) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Frame = -2 Query: 406 LENLEQFQEKAKKERLR-LWQYGD---VESDEEEQAXXXXXXXXXX*TKEGSGMRSHGLD 239 LE +F E + E ++ L YG V ++ + + GM+ G Sbjct: 901 LEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRA 960 Query: 238 MKVLDPERNSVESLYENLVRKRD 170 +K+ ++ ++ L E ++RKRD Sbjct: 961 VKIRPKTKDWLKGLREEIIRKRD 983
>N4BM_HUMAN (O95298) NADH-ubiquinone oxidoreductase subunit B14.5b (EC 1.6.5.3)| (EC 1.6.99.3) (Complex I-B14.5b) (CI-B14.5b) Length = 119 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/17 (52%), Positives = 15/17 (88%) Frame = -2 Query: 187 LVRKRDYIYAIRRRELY 137 LV++ DY+YA+R RE++ Sbjct: 74 LVKREDYLYAVRDREMF 90
>K0553_HUMAN (Q9UKJ3) Protein KIAA0553| Length = 1089 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 31 ISIDCNPRYYMFCLYKKKTQSTKDTD 108 IS CNP Y+ F L + K TK T+ Sbjct: 152 ISYSCNPLYFDFKLSRNKDARTKGTE 177 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,439,745 Number of Sequences: 219361 Number of extensions: 994245 Number of successful extensions: 2772 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2726 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2772 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
