>L_NDVB (P11205) Large structural protein (Protein L) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2204

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -3

Query: 285  CNSPLIPHHHGLEDDL*KQAVITFLTNSEMSHPRI 181
            C++PL+   H  +++  ++A+  FL N E+ HPR+
Sbjct: 1003 CSNPLLSGVHTEDNEAEEKALAEFLLNQEVIHPRV 1037

>YD57_SCHPO (Q10310) Hypothetical protein C6C3.07 in chromosome I|
          Length = 515

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +1

Query: 169 TKQENSWVRHLRISQECDYSLLLQVVFKTMMVRNQRRVTTL 291
           +KQEN +V+H++ S E    L +   +K + +  ++++ +L
Sbjct: 70  SKQENIYVKHIKSSNEAKTELEIFNCYKEISISKEKKINSL 110

>SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7.11.1)|
          Length = 3218

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 127 RQMKLRYTDKHVRTTKQENSWVRHLRISQ--ECDYSLLLQVVFKTMMVRN 270
           R+++ R T   V    Q N ++  +R+    E  Y LLL+   +T+++RN
Sbjct: 464 RRLRARLTPSLVHFIFQSNPYMTKVRLRSPGETSYKLLLRTCQETLLIRN 513

>GLTS_SYNY3 (P55038) Ferredoxin-dependent glutamate synthase 2 (EC 1.4.7.1)|
            (FD-GOGAT)
          Length = 1556

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/62 (20%), Positives = 29/62 (46%)
 Frame = -3

Query: 324  ILRFVQTDEPVKGCNSPLIPHHHGLEDDL*KQAVITFLTNSEMSHPRIFLFGSSDMFVSV 145
            ++R++  D+     NSP +PH HGL++     + I  + +        +L     + + +
Sbjct: 944  VVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKM 1003

Query: 144  SQ 139
            +Q
Sbjct: 1004 AQ 1005


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,428,628
Number of Sequences: 219361
Number of extensions: 862746
Number of successful extensions: 1736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1736
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)