ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYO1B_RAT (Q05096) Myosin Ib (Myosin I alpha) (MMI-alpha) (MMIa)... 28 4.6
2MYO1B_MOUSE (P46735) Myosin Ib (Myosin I alpha) (MMI-alpha) (MMI... 28 4.6
3MYO1B_HUMAN (O43795) Myosin Ib (Myosin I alpha) (MMI-alpha) (MMI... 28 6.0

>MYO1B_RAT (Q05096) Myosin Ib (Myosin I alpha) (MMI-alpha) (MMIa) (Myosin|
           heavy chain myr 1)
          Length = 1136

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 121 RNRLFPQNPESLIELLILRKEESIFPQTLFSERYK-WRC 8
           R+++F +NP +L +L  LRK+      TL  + Y+ W+C
Sbjct: 682 RSKIFIRNPRTLFQLEDLRKQRLEDLATLIQKIYRGWKC 720



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>MYO1B_MOUSE (P46735) Myosin Ib (Myosin I alpha) (MMI-alpha) (MMIa) (MIH-L)|
          Length = 1107

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 121 RNRLFPQNPESLIELLILRKEESIFPQTLFSERYK-WRC 8
           R+++F +NP +L +L  LRK+      TL  + Y+ W+C
Sbjct: 682 RSKIFIRNPRTLFQLEDLRKQRLEDLATLIQKIYRGWKC 720



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>MYO1B_HUMAN (O43795) Myosin Ib (Myosin I alpha) (MMI-alpha) (MMIa) (MYH-1c)|
          Length = 1136

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 121 RNRLFPQNPESLIELLILRKEESIFPQTLFSERYK-WRC 8
           R+++F +NP +L +L  LRK+      TL  + Y+ W+C
Sbjct: 682 RSKIFIRNPRTLFKLEDLRKQRLEDLATLIQKIYRGWKC 720


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,492,342
Number of Sequences: 219361
Number of extensions: 692314
Number of successful extensions: 1194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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