ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 117 3e-23
2gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
3gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
5dbj|AK102826.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
6dbj|AK066896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
7dbj|AK060809.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
8gb|AY109810.1| Zea mays CL5193_1 mRNA sequence 64 4e-07
9emb|AL109612.7|HSJ1018A4 Human DNA sequence from clone RP5-1018A... 42 1.3
10emb|AJ293568.1|YDI293568 Yaba-like disease virus (YLDV), complet... 42 1.3
11gb|AC008490.6| Homo sapiens chromosome 5 clone CTC-426I14, compl... 42 1.3
12emb|BX930100.2| Gallus gallus finished cDNA, clone ChEST1021d13 42 1.3
13gb|AC008513.7|AC008513 Homo sapiens chromosome 5 clone CTC-455C2... 42 1.3
14gb|AC017092.4|AC017092 Homo sapiens BAC clone RP11-510D22 from 5... 42 1.3
15gb|AC092638.2| Homo sapiens BAC clone RP11-363G3 from 2, complet... 42 1.3
16gb|AF245394.1|AF245394 Tanapox virus J1R, J2L, J3L, J4R, J5L, J6... 42 1.3
17gb|AY390642.1| Bruchidius cinerascens 12S small subunit ribosoma... 42 1.3
18gb|BC110947.1| Xenopus laevis cDNA clone MGC:132158 IMAGE:507880... 42 1.3
19gb|BC086626.1| Mus musculus DNA segment, Chr 13, Wayne State Uni... 40 5.2
20gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome... 40 5.2
21gb|AC147638.2| Mus musculus BAC clone RP23-181L5 from chromosome... 40 5.2
22gb|BC088572.1| Xenopus tropicalis zinc finger protein 622, mRNA ... 40 5.2
23gb|AC091278.6| Mus musculus chromosome 1, clone RP23-294D6, comp... 40 5.2
24emb|CR847981.15| Zebrafish DNA sequence from clone CH211-195H23 ... 40 5.2
25gb|AC122851.4| Mus musculus BAC clone RP23-171C17 from chromosom... 40 5.2
26gb|AC146265.2| Pan troglodytes BAC clone RP43-28O21 from 7, comp... 40 5.2
27gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, com... 40 5.2
28gb|BC059218.1| Mus musculus expressed sequence AI256361, mRNA (c... 40 5.2
29gb|AC010908.3| Homo sapiens BAC clone CTD-3073A19 from 7, comple... 40 5.2
30emb|CR749176.14| Zebrafish DNA sequence from clone DKEY-43B13 in... 40 5.2
31gb|AC137825.26| Medicago truncatula clone mth2-23j1, complete se... 40 5.2
32emb|AL050316.15|HSDJ911I5 Human DNA sequence from clone RP5-911I... 40 5.2
33gb|AC097257.7| Rattus norvegicus X BAC CH230-180I13 (Children's ... 40 5.2
34gb|AC151830.3| Mus musculus BAC clone RP24-76I23 from chromosome... 40 5.2
35ref|NM_001011460.1| Xenopus tropicalis zinc finger protein 622 (... 40 5.2
36gb|BC078640.1| Mus musculus La ribonucleoprotein domain family, ... 40 5.2
37gb|BC051459.1| Mus musculus La ribonucleoprotein domain family, ... 40 5.2
38ref|NM_172585.2| Mus musculus La ribonucleoprotein domain family... 40 5.2
39dbj|AK148903.1| Mus musculus 2 days neonate sympathetic ganglion... 40 5.2
40dbj|AK040148.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 40 5.2
41dbj|AK088176.1| Mus musculus 2 days neonate thymus thymic cells ... 40 5.2
42dbj|AK045990.1| Mus musculus adult male corpora quadrigemina cDN... 40 5.2
43gb|AF312913.1|AF312913 Homo sapiens chromosome 20 clone h119, co... 40 5.2
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
45dbj|AK172916.1| Mus musculus mRNA for mKIAA0217 protein 40 5.2
46gb|AC092141.4| Homo sapiens chromosome 16 clone RP11-478K1, comp... 40 5.2
47ref|XM_225526.3| PREDICTED: Rattus norvegicus similar to express... 40 5.2
48dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
49dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
50emb|BX470234.8| Zebrafish DNA sequence from clone DKEY-94N12 in ... 40 5.2
51emb|AL928829.6| Mouse DNA sequence from clone RP23-390B17 on chr... 40 5.2
52gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 5.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  117 bits (59), Expect = 3e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                           
Query: 5       cagctgcaacaaggaaacagctcaggaatcgtcaattactcaaatcaactgccacataaa 64
               |||||||| |||| |||||||||||||||| |||||||||||  ||||||||||| ||||
Sbjct: 9001901 cagctgcatcaagcaaacagctcaggaatcctcaattactcaggtcaactgccacgtaaa 9001960

                                                      
Query: 65      catacagaacattaaacaggtatcatatgagcacacttc 103
               |||||||||||||||| |||  |||||| ||||||||||
Sbjct: 9001961 catacagaacattaaataggagtcatataagcacacttc 9001999



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                           
Query: 270     tatgaaactctcttcctaacatcagcatccgagtcagattcatggtccttctcaacatct 329
               |||||| || |||||||| |||||||||| |||||||||||| | |||||||||| ||||
Sbjct: 9002164 tatgaacctttcttcctagcatcagcatctgagtcagattcacgatccttctcaagatct 9002223

                   
Query: 330     gaag 333
               ||||
Sbjct: 9002224 gaag 9002227
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>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0071M09,
              complete sequence
          Length = 143595

 Score =  117 bits (59), Expect = 3e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                          
Query: 5      cagctgcaacaaggaaacagctcaggaatcgtcaattactcaaatcaactgccacataaa 64
              |||||||| |||| |||||||||||||||| |||||||||||  ||||||||||| ||||
Sbjct: 126762 cagctgcatcaagcaaacagctcaggaatcctcaattactcaggtcaactgccacgtaaa 126821

                                                     
Query: 65     catacagaacattaaacaggtatcatatgagcacacttc 103
              |||||||||||||||| |||  |||||| ||||||||||
Sbjct: 126822 catacagaacattaaataggagtcatataagcacacttc 126860



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                          
Query: 270    tatgaaactctcttcctaacatcagcatccgagtcagattcatggtccttctcaacatct 329
              |||||| || |||||||| |||||||||| |||||||||||| | |||||||||| ||||
Sbjct: 127025 tatgaacctttcttcctagcatcagcatctgagtcagattcacgatccttctcaagatct 127084

                  
Query: 330    gaag 333
              ||||
Sbjct: 127085 gaag 127088
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>gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1261C08,
            complete sequence
          Length = 99910

 Score =  117 bits (59), Expect = 3e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                        
Query: 5    cagctgcaacaaggaaacagctcaggaatcgtcaattactcaaatcaactgccacataaa 64
            |||||||| |||| |||||||||||||||| |||||||||||  ||||||||||| ||||
Sbjct: 8937 cagctgcatcaagcaaacagctcaggaatcctcaattactcaggtcaactgccacgtaaa 8996

                                                   
Query: 65   catacagaacattaaacaggtatcatatgagcacacttc 103
            |||||||||||||||| |||  |||||| ||||||||||
Sbjct: 8997 catacagaacattaaataggagtcatataagcacacttc 9035



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                        
Query: 270  tatgaaactctcttcctaacatcagcatccgagtcagattcatggtccttctcaacatct 329
            |||||| || |||||||| |||||||||| |||||||||||| | |||||||||| ||||
Sbjct: 9200 tatgaacctttcttcctagcatcagcatctgagtcagattcacgatccttctcaagatct 9259

                
Query: 330  gaag 333
            ||||
Sbjct: 9260 gaag 9263
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  117 bits (59), Expect = 3e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                           
Query: 5       cagctgcaacaaggaaacagctcaggaatcgtcaattactcaaatcaactgccacataaa 64
               |||||||| |||| |||||||||||||||| |||||||||||  ||||||||||| ||||
Sbjct: 8999736 cagctgcatcaagcaaacagctcaggaatcctcaattactcaggtcaactgccacgtaaa 8999795

                                                      
Query: 65      catacagaacattaaacaggtatcatatgagcacacttc 103
               |||||||||||||||| |||  |||||| ||||||||||
Sbjct: 8999796 catacagaacattaaataggagtcatataagcacacttc 8999834



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                           
Query: 270     tatgaaactctcttcctaacatcagcatccgagtcagattcatggtccttctcaacatct 329
               |||||| || |||||||| |||||||||| |||||||||||| | |||||||||| ||||
Sbjct: 8999999 tatgaacctttcttcctagcatcagcatctgagtcagattcacgatccttctcaagatct 9000058

                   
Query: 330     gaag 333
               ||||
Sbjct: 9000059 gaag 9000062
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>dbj|AK102826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109C10, full
            insert sequence
          Length = 3185

 Score =  117 bits (59), Expect = 3e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                        
Query: 5    cagctgcaacaaggaaacagctcaggaatcgtcaattactcaaatcaactgccacataaa 64
            |||||||| |||| |||||||||||||||| |||||||||||  ||||||||||| ||||
Sbjct: 2815 cagctgcatcaagcaaacagctcaggaatcctcaattactcaggtcaactgccacgtaaa 2756

                                                   
Query: 65   catacagaacattaaacaggtatcatatgagcacacttc 103
            |||||||||||||||| |||  |||||| ||||||||||
Sbjct: 2755 catacagaacattaaataggagtcatataagcacacttc 2717



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                        
Query: 270  tatgaaactctcttcctaacatcagcatccgagtcagattcatggtccttctcaacatct 329
            |||||| || |||||||| |||||||||| |||||||||||| | |||||||||| ||||
Sbjct: 2552 tatgaacctttcttcctagcatcagcatctgagtcagattcacgatccttctcaagatct 2493

                
Query: 330  gaag 333
            ||||
Sbjct: 2492 gaag 2489
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>dbj|AK066896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091L22, full
            insert sequence
          Length = 2881

 Score =  117 bits (59), Expect = 3e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                        
Query: 5    cagctgcaacaaggaaacagctcaggaatcgtcaattactcaaatcaactgccacataaa 64
            |||||||| |||| |||||||||||||||| |||||||||||  ||||||||||| ||||
Sbjct: 2795 cagctgcatcaagcaaacagctcaggaatcctcaattactcaggtcaactgccacgtaaa 2736

                                                   
Query: 65   catacagaacattaaacaggtatcatatgagcacacttc 103
            |||||||||||||||| |||  |||||| ||||||||||
Sbjct: 2735 catacagaacattaaataggagtcatataagcacacttc 2697



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                        
Query: 270  tatgaaactctcttcctaacatcagcatccgagtcagattcatggtccttctcaacatct 329
            |||||| || |||||||| |||||||||| |||||||||||| | |||||||||| ||||
Sbjct: 2532 tatgaacctttcttcctagcatcagcatctgagtcagattcacgatccttctcaagatct 2473

                
Query: 330  gaag 333
            ||||
Sbjct: 2472 gaag 2469
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>dbj|AK060809.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G06, full
            insert sequence
          Length = 2169

 Score =  117 bits (59), Expect = 3e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                        
Query: 5    cagctgcaacaaggaaacagctcaggaatcgtcaattactcaaatcaactgccacataaa 64
            |||||||| |||| |||||||||||||||| |||||||||||  ||||||||||| ||||
Sbjct: 2083 cagctgcatcaagcaaacagctcaggaatcctcaattactcaggtcaactgccacgtaaa 2024

                                                   
Query: 65   catacagaacattaaacaggtatcatatgagcacacttc 103
            |||||||||||||||| |||  |||||| ||||||||||
Sbjct: 2023 catacagaacattaaataggagtcatataagcacacttc 1985



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                        
Query: 270  tatgaaactctcttcctaacatcagcatccgagtcagattcatggtccttctcaacatct 329
            |||||| || |||||||| |||||||||| |||||||||||| | |||||||||| ||||
Sbjct: 1820 tatgaacctttcttcctagcatcagcatctgagtcagattcacgatccttctcaagatct 1761

                
Query: 330  gaag 333
            ||||
Sbjct: 1760 gaag 1757
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>gb|AY109810.1| Zea mays CL5193_1 mRNA sequence
          Length = 1219

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 48   atcaactgccacataaacatacagaacattaaacaggtatcatatgagcacacttc 103
            ||||||||||||||||||| ||||||||||||| | ||||||||| || |||||||
Sbjct: 1088 atcaactgccacataaacacacagaacattaaata-gtatcatataaggacacttc 1034



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 248 atcagattcttctcagccagcctatgaaactctcttcctaacatcagcatccgagtcaga 307
           |||||| |||||||  ||||| | ||||||||| |||||||||||| |||| || |||||
Sbjct: 913 atcagactcttctcttccagcgtttgaaactcttttcctaacatcaccatctgaatcaga 854
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>emb|AL109612.7|HSJ1018A4 Human DNA sequence from clone RP5-1018A4 on chromosome 6q12-13 Contains
              part of a novel gene, part of the gene for a novel EGF-like
              domain containing protein and a novel gene, complete
              sequence
          Length = 106273

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 124    ttgaaaaataaaaacgtgtaaatgcattg 152
              |||||||||  ||||||||||||||||||
Sbjct: 103638 ttgaaaaatttaaacgtgtaaatgcattg 103666
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>emb|AJ293568.1|YDI293568 Yaba-like disease virus (YLDV), complete genome
          Length = 144575

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 240   ttatttttatcagattcttct 260
             |||||||||||||||||||||
Sbjct: 63578 ttatttttatcagattcttct 63558
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>gb|AC008490.6| Homo sapiens chromosome 5 clone CTC-426I14, complete sequence
          Length = 113213

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 225   tcaacccttccaagtttatttttat 249
             |||| ||||||||||||||||||||
Sbjct: 43648 tcaatccttccaagtttatttttat 43624
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>emb|BX930100.2| Gallus gallus finished cDNA, clone ChEST1021d13
          Length = 1018

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 235 caagtttatttttatcagatt 255
           |||||||||||||||||||||
Sbjct: 807 caagtttatttttatcagatt 827
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>gb|AC008513.7|AC008513 Homo sapiens chromosome 5 clone CTC-455C23, complete sequence
          Length = 224058

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 225   tcaacccttccaagtttatttttat 249
             |||| ||||||||||||||||||||
Sbjct: 71895 tcaatccttccaagtttatttttat 71919
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>gb|AC017092.4|AC017092 Homo sapiens BAC clone RP11-510D22 from 5, complete sequence
          Length = 180072

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 225   tcaacccttccaagtttatttttat 249
             |||| ||||||||||||||||||||
Sbjct: 65890 tcaatccttccaagtttatttttat 65866
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>gb|AC092638.2| Homo sapiens BAC clone RP11-363G3 from 2, complete sequence
          Length = 167941

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 12     aacaaggaaacagctcaggaa 32
              |||||||||||||||||||||
Sbjct: 125568 aacaaggaaacagctcaggaa 125548
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>gb|AF245394.1|AF245394 Tanapox virus J1R, J2L, J3L, J4R, J5L, J6R, and J7L genes, complete
            cds
          Length = 5137

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 240  ttatttttatcagattcttct 260
            |||||||||||||||||||||
Sbjct: 4654 ttatttttatcagattcttct 4674
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>gb|AY390642.1| Bruchidius cinerascens 12S small subunit ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 401

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 113 taggtatgttcttgaaaaataaaaa 137
           |||||||||||||||||| ||||||
Sbjct: 340 taggtatgttcttgaaaattaaaaa 316
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>gb|BC110947.1| Xenopus laevis cDNA clone MGC:132158 IMAGE:5078805, complete cds
          Length = 4209

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 268  cctatgaaactctcttcctaa 288
            |||||||||||||||||||||
Sbjct: 1304 cctatgaaactctcttcctaa 1284
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>gb|BC086626.1| Mus musculus DNA segment, Chr 13, Wayne State University 64,
            expressed, mRNA (cDNA clone IMAGE:6409892), complete cds
          Length = 4687

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 4180 atttttatcagattcttctc 4161
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>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence
          Length = 235930

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    atttttatcagattcttctc 261
              ||||||||||||||||||||
Sbjct: 185333 atttttatcagattcttctc 185352
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>gb|AC147638.2| Mus musculus BAC clone RP23-181L5 from chromosome 7, complete sequence
          Length = 196114

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     gtcaattactcaaatcaact 54
              ||||||||||||||||||||
Sbjct: 141582 gtcaattactcaaatcaact 141563
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>gb|BC088572.1| Xenopus tropicalis zinc finger protein 622, mRNA (cDNA clone
            MGC:97771 IMAGE:6989104), complete cds
          Length = 2020

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 1127 atttttatcagattcttctc 1108
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>gb|AC091278.6| Mus musculus chromosome 1, clone RP23-294D6, complete sequence
          Length = 244656

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     cacataaacatacagaacat 76
              ||||||||||||||||||||
Sbjct: 168018 cacataaacatacagaacat 167999
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>emb|CR847981.15| Zebrafish DNA sequence from clone CH211-195H23 in linkage group 15,
             complete sequence
          Length = 197506

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   tttatttttatcagattctt 258
             ||||||||||||||||||||
Sbjct: 57931 tttatttttatcagattctt 57912
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>gb|AC122851.4| Mus musculus BAC clone RP23-171C17 from chromosome 3, complete sequence
          Length = 203490

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    ctctcttcctaacatcagca 296
              ||||||||||||||||||||
Sbjct: 106732 ctctcttcctaacatcagca 106713
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>gb|AC146265.2| Pan troglodytes BAC clone RP43-28O21 from 7, complete sequence
          Length = 170419

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 6      agctgcaacaaggaaacagctcag 29
              |||| |||||||||||||||||||
Sbjct: 166394 agctccaacaaggaaacagctcag 166417
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>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence
          Length = 224996

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 236    aagtttatttttatcagattcttc 259
              |||||||||||||||||| |||||
Sbjct: 172051 aagtttatttttatcagactcttc 172028
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>gb|BC059218.1| Mus musculus expressed sequence AI256361, mRNA (cDNA clone
            IMAGE:6409892), complete cds
          Length = 4687

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 4180 atttttatcagattcttctc 4161
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>gb|AC010908.3| Homo sapiens BAC clone CTD-3073A19 from 7, complete sequence
          Length = 127989

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 6      agctgcaacaaggaaacagctcag 29
              |||| |||||||||||||||||||
Sbjct: 119404 agctccaacaaggaaacagctcag 119427
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>emb|CR749176.14| Zebrafish DNA sequence from clone DKEY-43B13 in linkage group 19,
            complete sequence
          Length = 237649

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 60   ataaacatacagaacattaaacag 83
            |||||||| |||||||||||||||
Sbjct: 2533 ataaacattcagaacattaaacag 2556
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>gb|AC137825.26| Medicago truncatula clone mth2-23j1, complete sequence
          Length = 130938

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 127   aaaaataaaaacgtgtaaatgcat 150
             |||||||||||| |||||||||||
Sbjct: 18400 aaaaataaaaacttgtaaatgcat 18377
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>emb|AL050316.15|HSDJ911I5 Human DNA sequence from clone RP5-911I5 on chromosome 20q13.11-13.2
            Contains ESTs, STSs and GSSs, complete sequence
          Length = 72289

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  tttatttttatcagattctt 258
            ||||||||||||||||||||
Sbjct: 1255 tttatttttatcagattctt 1236
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>gb|AC097257.7| Rattus norvegicus X BAC CH230-180I13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 196137

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    caactgccacataaacatacagaa 73
             ||||||||||||||| ||||||||
Sbjct: 48073 caactgccacataaaaatacagaa 48096
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>gb|AC151830.3| Mus musculus BAC clone RP24-76I23 from chromosome 7, complete sequence
          Length = 212931

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    gtcaattactcaaatcaact 54
             ||||||||||||||||||||
Sbjct: 94960 gtcaattactcaaatcaact 94941
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>ref|NM_001011460.1| Xenopus tropicalis zinc finger protein 622 (znf622), mRNA
          Length = 2020

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 1127 atttttatcagattcttctc 1108
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>gb|BC078640.1| Mus musculus La ribonucleoprotein domain family, member 5, mRNA (cDNA
            clone MGC:78318 IMAGE:6506267), complete cds
          Length = 4382

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 3872 atttttatcagattcttctc 3853
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>gb|BC051459.1| Mus musculus La ribonucleoprotein domain family, member 5, mRNA (cDNA
            clone IMAGE:6484601), complete cds
          Length = 4668

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 4148 atttttatcagattcttctc 4129
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>ref|NM_172585.2| Mus musculus La ribonucleoprotein domain family, member 5 (Larp5),
            mRNA
          Length = 4707

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 4201 atttttatcagattcttctc 4182
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>dbj|AK148903.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
           full-length enriched library, clone:7120461F20
           product:unclassifiable, full insert sequence
          Length = 1459

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 atttttatcagattcttctc 261
           ||||||||||||||||||||
Sbjct: 73  atttttatcagattcttctc 54
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>dbj|AK040148.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430070B21 product:inferred: hypothetical
           protein KIAA0217 {Homo sapiens}, full insert sequence
          Length = 957

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 atttttatcagattcttctc 261
           ||||||||||||||||||||
Sbjct: 819 atttttatcagattcttctc 800
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>dbj|AK088176.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430005I09
            product:inferred: hypothetical protein KIAA0217 {Homo
            sapiens}, full insert sequence
          Length = 2434

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 1049 atttttatcagattcttctc 1030
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>dbj|AK045990.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230331K19 product:inferred:
            hypothetical protein KIAA0217 {Homo sapiens}, full insert
            sequence
          Length = 3153

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 3117 atttttatcagattcttctc 3098
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>gb|AF312913.1|AF312913 Homo sapiens chromosome 20 clone h119, complete sequence
          Length = 122951

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   tttatttttatcagattctt 258
             ||||||||||||||||||||
Sbjct: 86552 tttatttttatcagattctt 86571
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 119     tgttcttgaaaaataaaaac 138
               ||||||||||||||||||||
Sbjct: 7991666 tgttcttgaaaaataaaaac 7991647
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>dbj|AK172916.1| Mus musculus mRNA for mKIAA0217 protein
          Length = 5132

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 4184 atttttatcagattcttctc 4165
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>gb|AC092141.4| Homo sapiens chromosome 16 clone RP11-478K1, complete sequence
          Length = 98984

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   tctcttcctaacatcagcat 297
             ||||||||||||||||||||
Sbjct: 41180 tctcttcctaacatcagcat 41161
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>ref|XM_225526.3| PREDICTED: Rattus norvegicus similar to expressed sequence AI256361
            (predicted) (LOC307070), mRNA
          Length = 4748

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  atttttatcagattcttctc 261
            ||||||||||||||||||||
Sbjct: 4253 atttttatcagattcttctc 4234
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   tgttcttgaaaaataaaaac 138
             ||||||||||||||||||||
Sbjct: 99184 tgttcttgaaaaataaaaac 99165
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>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592E11
          Length = 153734

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   tgttcttgaaaaataaaaac 138
             ||||||||||||||||||||
Sbjct: 15435 tgttcttgaaaaataaaaac 15416
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>emb|BX470234.8| Zebrafish DNA sequence from clone DKEY-94N12 in linkage group 22,
             complete sequence
          Length = 149941

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ccttccaagtttatttttat 249
             ||||||||||||||||||||
Sbjct: 99637 ccttccaagtttatttttat 99656
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>emb|AL928829.6| Mouse DNA sequence from clone RP23-390B17 on chromosome 2, complete
             sequence
          Length = 162437

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    acataaacatacagaacatt 77
             ||||||||||||||||||||
Sbjct: 86800 acataaacatacagaacatt 86781
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     tatgttcttgaaaaataaaa 136
               ||||||||||||||||||||
Sbjct: 2870067 tatgttcttgaaaaataaaa 2870086


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,442,186
Number of Sequences: 3902068
Number of extensions: 5442186
Number of successful extensions: 97873
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97655
Number of HSP's gapped (non-prelim): 218
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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