ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocy... 37 0.027
2Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA int... 33 0.40
3AT12A_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2... 30 2.6
4WNT4_DROME (P40589) Protein Wnt-4 precursor (dWnt-4) 28 9.7
5O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1 28 9.7
6COL_PIG (P02703) Colipase precursor (Procolipase II) 28 9.7

>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex|
            component Sec8)
          Length = 1053

 Score = 37.0 bits (84), Expect = 0.027
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -1

Query: 483  ILKVNVPGREIPMDAERRISQILGH 409
            +LKVNVPGR+ P DA+ R+ +IL H
Sbjct: 1029 LLKVNVPGRDTPSDAQSRLLEILSH 1053



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>Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA intergenic|
           region
          Length = 83

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 172 LHPKYHTFTRIKNKRSIQNTTNLLSMRQQIVHYLPICRHQKKKPNRNNKINYSYKESR 345
           L+P Y T +  ++    + T +L+S+R +     P C H  KK N+ N + + Y + +
Sbjct: 21  LNPMYGTISPTRDVPHTKETRDLISLRTKQGAEYPPCPHCGKKVNKGNALRWHYDKCK 78



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>AT12A_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2 (EC 3.6.3.10)|
           (Proton pump) (Non-gastric H(+)/K(+) ATPase alpha
           subunit) (HK alpha 2)
          Length = 1094

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 27  WLTFGIKFVAKVGTSVVTIYMRYVAATI*ITCGC----NNLNNKTHESDFVKITPKVSHI 194
           W+ FGI++V+    S+  +Y+  V A + I  G         +    + F K+ P+ + +
Sbjct: 182 WIAFGIQYVSNPSASLDRVYLGTVLAVVVILTGIFAYYQEAKSTNIMASFCKMIPQQAVV 241

Query: 195 YKDQE 209
            +D E
Sbjct: 242 IRDSE 246



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>WNT4_DROME (P40589) Protein Wnt-4 precursor (dWnt-4)|
          Length = 539

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 190 TFTRIKNKRSIQNTTNLLSMRQQIVHYLPICRHQKKKPNRNNKINYSYKESRGRYC 357
           T  R K   +I+   N  SMRQ     +   + ++KKP ++      Y E+   YC
Sbjct: 423 TLLRQKYNEAIRKAPNQRSMRQVSSSRMKKPKQRRKKPQQSQYTTLYYLETSPSYC 478



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>O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1|
          Length = 313

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 212 LFLILVNV*YFGCNFNKIRLVCFVIQIVAAT----CYSNCCSHITHVNCHNRCANF 57
           L L+++ V +F    +   ++  +++I +A      +S C SH+T V  H  CA+F
Sbjct: 202 LSLLVLLVSFFFITISYAYILAAILRIPSAEGQKKAFSTCASHLTVVIIHYGCASF 257



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>COL_PIG (P02703) Colipase precursor (Procolipase II)|
          Length = 112

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 128 AATCYSNCCSHITHVNCHNRCANFGNEFNTEC 33
           +A C SNCC H T ++  +RCA    E N+EC
Sbjct: 37  SAQCKSNCCQHDTILSL-SRCALKARE-NSEC 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,926,906
Number of Sequences: 219361
Number of extensions: 1104498
Number of successful extensions: 2590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2588
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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