ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25d04 |
|---|---|
| Clone Library Name | barley_pub |
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 34.7 bits (78), Expect = 0.061 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 22/90 (24%) Frame = +3 Query: 90 MLASTLRIIFQAYTDTRQIHSS--------CPATS*C-------------SCISAPERGA 206 M AST+ + AY+D+ Q+ C A S C SC+S+P A Sbjct: 1 MAASTMSVCSSAYSDSWQVDDCPESCCEPPCSAPSCCAPAPSLSLVCTPVSCVSSPCCQA 60 Query: 207 RSANARSCSGGCRPARSP-CCSRSDWQSGC 293 + +C GC + +P CC +S Q C Sbjct: 61 -ACEPSACQSGCTSSCTPSCCQQSSCQPAC 89
>KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-associated| protein 10.3) (High sulfur keratin-associated protein 10.3) (Keratin-associated protein 18-3) (Keratin-associated protein 18.3) Length = 221 Score = 32.7 bits (73), Expect = 0.23 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 22/90 (24%) Frame = +3 Query: 90 MLASTLRIIFQAYTDTRQIHS-------------SCPATS*C--------SCISAPERGA 206 M ST+ + AY+D+ Q+ + SC A + C SC+S+P A Sbjct: 1 MATSTMSVCSSAYSDSWQVDACPESCCEPPCCAPSCCAPAPCLTLVCTPVSCVSSPCCQA 60 Query: 207 RSANARSCSGGCRPARSP-CCSRSDWQSGC 293 + C GC + +P CC +S Q C Sbjct: 61 -ACEPSPCQSGCTSSCTPSCCQQSSCQPAC 89
>MTCU_CALSI (Q9U620) Copper-specific metallothionein-2 (CuMT-II)| Length = 64 Score = 31.2 bits (69), Expect = 0.68 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = +3 Query: 156 CPATS*CSCISAPERGARSANARSCSGGCRPARSPCCSRSDWQSGC 293 C S C+C + P + + S N +C C+ S CC S C Sbjct: 16 CCCGSTCNCTTCPSKQSCSCNDGACGSACQCKTSCCCGADCKCSPC 61
>KR102_HUMAN (P60368) Keratin-associated protein 10-2 (Keratin-associated| protein 10.2) (High sulfur keratin-associated protein 10.2) (Keratin-associated protein 18-2) (Keratin-associated protein 18.2) Length = 255 Score = 31.2 bits (69), Expect = 0.68 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 22/90 (24%) Frame = +3 Query: 90 MLASTLRIIFQAYTDTRQIHS-------------SCPATS*C--------SCISAPERGA 206 M AST+ I A T++ Q+ SC A + C SC+S+P A Sbjct: 1 MAASTMSICSSACTNSWQVDDCPESCCELPCGTPSCCAPAPCLTLVCTPVSCVSSPCCQA 60 Query: 207 RSANARSCSGGCRPARSP-CCSRSDWQSGC 293 + +C GC + +P CC +S Q C Sbjct: 61 -ACEPSACQSGCTSSCTPSCCQQSSCQPAC 89
>RPOA_PORGI (Q7MTP0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = -1 Query: 300 RSSNLIASLNVSNKGTGQVGIRLNSSEHLQIALLALVPIYKNIRKL 163 +S+ L ++ NKG G V N +EH +++ +A+ IY IR + Sbjct: 136 KSATLTMEFSI-NKGRGYVSAEENRAEHNELSTIAIDSIYTPIRNV 180
>XERC_LACLE (Q48733) Tyrosine recombinase xerC| Length = 295 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -3 Query: 268 EQQGDRAGRHPPEQLRAFADRAPRSGADIQEHQEVAG 158 ++ G AG HP E +FA +GAD++ QE+ G Sbjct: 230 QKAGLTAGAHPHELRHSFATAMLNNGADLRSVQELLG 266
>KR109_HUMAN (P60411) Keratin-associated protein 10-9 (Keratin-associated| protein 10.9) (High sulfur keratin-associated protein 10.9) (Keratin-associated protein 18-9) (Keratin-associated protein 18.9) Length = 292 Score = 29.3 bits (64), Expect = 2.6 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 11/79 (13%) Frame = +3 Query: 90 MLASTLRIIFQAYTDTRQI--------HSSCPATS*CS---CISAPERGARSANARSCSG 236 M AST+ I AY+D+ Q+ C ATS C+ C++ ++ C Sbjct: 1 MAASTMSIRSSAYSDSWQVDDCPESCCEPPCCATSCCAPAPCLTLVCTPVSRVSSPCCQV 60 Query: 237 GCRPARSPCCSRSDWQSGC 293 C P SPC QSGC Sbjct: 61 TCEP--SPC------QSGC 71
>LCE1F_HUMAN (Q5T754) Late cornified envelope protein 1F (Late envelope protein| 6) Length = 118 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 17/77 (22%) Frame = +3 Query: 150 SSCPATS*CSCISAPERGARSANARSC----SGGC-------------RPARSPCCSRSD 278 SSC + S C + G S+ C GGC RP S CCS+ Sbjct: 41 SSCCSVSSGGCCGSSSGGCCSSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPS 100 Query: 279 WQSGC*IFLQGSETGHC 329 S C G +G C Sbjct: 101 AGSSCCGGGSGQHSGGC 117
>LCE1E_HUMAN (Q5T753) Late cornified envelope protein 1E (Late envelope protein| 5) Length = 118 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 17/77 (22%) Frame = +3 Query: 150 SSCPATS*CSCISAPERGARSANARSC----SGGC-------------RPARSPCCSRSD 278 SSC + S C + G+ +++ C GGC RP S CCS+ Sbjct: 41 SSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGGGGCCLSHHRHHRSHRHRPQSSDCCSQPS 100 Query: 279 WQSGC*IFLQGSETGHC 329 S C G +G C Sbjct: 101 GGSSCCGGGSGQHSGGC 117
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +3 Query: 228 CSGGCRPARSPCCSRSDWQSGC*IF 302 C C A SPCC +S QS C F Sbjct: 134 CVSICSGASSPCCQQSSCQSACCTF 158
>KR121_HUMAN (P59990) Keratin-associated protein 12-1 (Keratin-associated| protein 12.1) (High sulfur keratin-associated protein 12.1) Length = 96 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 225 SCSGGCRPARSPCCSRSDWQSGC 293 SCS GC+PA CC+ S Q+ C Sbjct: 5 SCSSGCQPA---CCAPSPCQASC 24
>LCE1C_HUMAN (Q5T751) Late cornified envelope protein 1C (Late envelope protein| 3) Length = 118 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 17/77 (22%) Frame = +3 Query: 150 SSCPATS*CSCISAPERGARSANARSC----SGGC-------------RPARSPCCSRSD 278 SSC + S C + G+ +++ C GGC RP S CCS+ Sbjct: 41 SSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCSQPS 100 Query: 279 WQSGC*IFLQGSETGHC 329 S C G +G C Sbjct: 101 GGSSCCGGGSGQHSGGC 117
>LCE1B_HUMAN (Q5T7P3) Late cornified envelope protein 1B (Late envelope protein| 2) (Small proline-rich-like epidermal differentiation complex protein 2A) Length = 118 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 17/77 (22%) Frame = +3 Query: 150 SSCPATS*CSCISAPERGARSANARSC----SGGC-------------RPARSPCCSRSD 278 SSC + S C + G+ +++ C GGC RP S CCS+ Sbjct: 41 SSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCSQPS 100 Query: 279 WQSGC*IFLQGSETGHC 329 S C G +G C Sbjct: 101 GGSSCCGGGSGQHSGGC 117
>LCE1D_HUMAN (Q5T752) Late cornified envelope protein 1D (Late envelope protein| 4) Length = 114 Score = 28.5 bits (62), Expect = 4.4 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 17/65 (26%) Frame = +3 Query: 150 SSCPATS*CSCISAPERGARSANARSC----SGGC-------------RPARSPCCSRSD 278 SSC + S C + G +N+ C GGC RP S CCS+ Sbjct: 37 SSCCSVSSGGCCGSSSGGGCGSNSGGCCSSGGGGCCLSHHRRHRSHRRRPQSSDCCSQPS 96 Query: 279 WQSGC 293 S C Sbjct: 97 GGSSC 101
>EGR2_HUMAN (P11161) Early growth response protein 2 (EGR-2) (Krox-20 protein)| (AT591) Length = 476 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = +3 Query: 123 AYTDTRQIHSSCPATS*CSCISAPERGARSANARSCSGGCRPARSPCCSRSDWQSG 290 A +D R+ H+ SAP + + SCSGG +P + C S S G Sbjct: 408 ARSDERKRHTKIHLRQKERKSSAPSASVPAPSTASCSGGVQPGGTLCSSNSSSLGG 463
>KR511_HUMAN (Q6L8G4) Keratin-associated protein 5-11 (Keratin-associated| protein 5.11) (Ultrahigh sulfur keratin-associated protein 5.11) Length = 156 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 6/52 (11%) Frame = +3 Query: 156 CPATS*CSCISAPERGARSANARSCS------GGCRPARSPCCSRSDWQSGC 293 C CSC S G SC G C ++S CC SGC Sbjct: 46 CCCVPACSCSSCGSCGGSKGGCGSCGSSKGGCGSCGCSQSNCCKPCCSSSGC 97
>KR122_HUMAN (P59991) Keratin-associated protein 12-2 (Keratin-associated| protein 12.2) (High sulfur keratin-associated protein 12.2) Length = 146 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 225 SCSGGCRPARSPCCSRSDWQSGC 293 SCS GC+PA CC+ S Q C Sbjct: 5 SCSSGCQPA---CCAPSPCQPAC 24
>LIPB_TROW8 (Q83I07) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 225 Score = 28.1 bits (61), Expect = 5.7 Identities = 22/67 (32%), Positives = 30/67 (44%) Frame = +1 Query: 31 QSWQRLEKTKVIKQMYGPILCLHQP*GSSSRPIQTLGRFIVAVQQLPDVLVYRHQSEERD 210 +SW+ + KVI+ G + H P PI +LG PDVL Y Q EE Sbjct: 64 RSWEMPQNEKVIRVGRGGKITWHGPGQLVGYPILSLG-------ATPDVLRYVRQIEEGL 116 Query: 211 LQMLGAV 231 + L +V Sbjct: 117 INALQSV 123
>LIPB_TROWT (Q83G63) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 235 Score = 28.1 bits (61), Expect = 5.7 Identities = 22/67 (32%), Positives = 30/67 (44%) Frame = +1 Query: 31 QSWQRLEKTKVIKQMYGPILCLHQP*GSSSRPIQTLGRFIVAVQQLPDVLVYRHQSEERD 210 +SW+ + KVI+ G + H P PI +LG PDVL Y Q EE Sbjct: 74 RSWEMPQNEKVIRVGRGGKITWHGPGQLVGYPILSLG-------ATPDVLRYVRQIEEGL 126 Query: 211 LQMLGAV 231 + L +V Sbjct: 127 INALQSV 133
>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| Length = 3034 Score = 25.0 bits (53), Expect(2) = 6.3 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -3 Query: 292 QPDCQSEREQQGDRAGRHPPE 230 QP+ ++ERE R RHP E Sbjct: 2327 QPEPRAERETSSSRRRRHPDE 2347 Score = 21.2 bits (43), Expect(2) = 6.3 Identities = 8/19 (42%), Positives = 14/19 (73%) Frame = -1 Query: 201 LALVPIYKNIRKLLDSYYE 145 +ALV IY+ + +LL +Y+ Sbjct: 2353 VALVVIYRTLGQLLPEHYD 2371
>NDUA5_CAEEL (Q18359) Probable NADH dehydrogenase [ubiquinone] 1 alpha| subcomplex subunit 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 17.3 kDa subunit) Length = 150 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +1 Query: 139 GRFIVAVQQLPDVLVYRHQSEERDLQMLGAVQADADL 249 GR + A++Q+P YR +E Q L VQA+ D+ Sbjct: 63 GRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDI 99
>END1_BUCAI (P57487) Endonuclease-1 (EC 3.1.21.1) (Endonuclease I) (Endo I)| Length = 250 Score = 27.7 bits (60), Expect = 7.5 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 13/94 (13%) Frame = +3 Query: 42 KIGKNKSDKTNVWSH-------------FMLASTLRIIFQAYTDTRQIHSSCPATS*CSC 182 KI K K+DK NV+ + + T+ +QA + +IH + P + C C Sbjct: 8 KIEKIKNDKKNVYCYNKYVFFFSSNKRSYFKKKTIENFYQAKIISIKIHKNAPGSFYCGC 67 Query: 183 ISAPERGARSANARSCSGGCRPARSPCCSRSDWQ 284 ++ N SC R ++ +R +W+ Sbjct: 68 QIIWKQKKGIPNLYSCGYKIRKNKNR-ATRIEWE 100
>ITPK1_MOUSE (Q8BYN3) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase) Length = 419 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +1 Query: 118 SRPIQTLGRFIVAVQQLPDVLVYRHQSEERDLQMLGAVQADAD 246 SRPI+ G V + +L DV++ Q++ + L+++ Q D Sbjct: 44 SRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYID 86
>ENH4_HUMAN (Q96L62) HERV-H_1q41 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (Env protein HERV-Hcl.7) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 402 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 241 HPPEQLRAFADRAPRSGADIQEHQEVAGQL 152 +PPE+L F DR+ ++ DI HQ+ A L Sbjct: 104 YPPEELIYFLDRSSKTSPDI-SHQQAAALL 132
>HYM1_YEAST (P32464) Protein HYM1| Length = 399 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/50 (28%), Positives = 27/50 (54%) Frame = -1 Query: 318 SQIPAGRSSNLIASLNVSNKGTGQVGIRLNSSEHLQIALLALVPIYKNIR 169 S + +S+ L+ASL V + I +NS E+L++ + + KN++ Sbjct: 243 SYVTKRQSTKLLASLIVIRSNNALMNIYINSPENLKLIMTLMTDKSKNLQ 292
>ITPK1_HUMAN (Q13572) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase) Length = 414 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +1 Query: 118 SRPIQTLGRFIVAVQQLPDVLVYRHQSEERDLQMLGAVQADAD 246 SRPI+ G V + +L DV++ Q++ + L+++ Q D Sbjct: 44 SRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYID 86
>HRBL_MOUSE (Q80WC7) HIV-1 Rev-binding protein-like protein (Rev/Rex activation| domain binding protein-related) (RAB-R) Length = 479 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = -2 Query: 266 ATRGPGRSASA*TAPSICRSRSSLWCRYTRTSGSC 162 A +GPG + + + S +WCR R G C Sbjct: 5 AKKGPGPGGGVGGSKAEAEAASEVWCRRVRELGGC 39
>ENH1_HUMAN (Q9N2K0) HERV-H_2q24.3 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (Env protein HERV-H/p62) (Env protein HERV-H19) (HERV-H/env62) (Env protein HERV-Hcl.3) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 584 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 241 HPPEQLRAFADRAPRSGADIQEHQEVAGQL 152 +PPE+L F DR+ ++ DI HQ+ A L Sbjct: 104 YPPEELIYFLDRSSKTSPDI-SHQQAAALL 132
>ENH5_HUMAN (P61549) HERV-H_19p13.11 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) (Env protein RGH1) (Env protein RTLV-H) [Includes: Surface protein (SU)] Length = 369 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 241 HPPEQLRAFADRAPRSGADIQEHQEVAGQL 152 +PPE+L F DR+ ++ DI HQ+ A L Sbjct: 90 YPPEELIYFLDRSSKTSPDI-SHQQAAALL 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,992,894 Number of Sequences: 219361 Number of extensions: 926365 Number of successful extensions: 2791 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2786 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
