ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC125643.3| Rattus norvegicus 4 BAC CH230-55N7 (Children's Ho... 44 0.28
2gb|AC099466.7| Rattus norvegicus 4 BAC CH230-63I9 (Children's Ho... 44 0.28
3gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, com... 44 0.28
4gb|AC132422.3| Mus musculus BAC clone RP23-302G15 from 12, compl... 44 0.28
5gb|AC148005.3| Mus musculus BAC clone RP23-295O6 from 12, comple... 44 0.28
6ref|NM_197639.1| Oryza sativa (japonica cultivar-group) putative... 42 1.1
7gb|AY290033.1| Succisa pratensis tRNA-Lys (trnK) gene, intron; a... 42 1.1
8emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on ch... 42 1.1
9ref|XM_779059.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.1
10emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, ... 42 1.1
11emb|AL022197.2|ATM7J2 Arabidopsis thaliana DNA chromosome 4, P1 ... 42 1.1
12gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 geno... 42 1.1
13gb|AC093913.2| Homo sapiens BAC clone RP11-768G3 from 4, complet... 42 1.1
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
15gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Can... 42 1.1
16gb|AF178688.1|AF178688 Arabidopsis thaliana homeobox protein (FW... 42 1.1
17emb|AJ327395.1|HSA327395 Homo sapiens genomic sequence surroundi... 42 1.1
18dbj|AK072270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
19emb|BX470216.11| Mouse DNA sequence from clone RP23-390M8 on chr... 42 1.1
20gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
21ref|XM_429518.1| PREDICTED: Gallus gallus LOC417531 (LOC417531),... 40 4.4
22ref|XM_655620.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 4.4
23gb|AC092161.3| Homo sapiens BAC clone RP11-590C23 from 7, comple... 40 4.4
24gb|AC107638.17| Mus musculus, clone RP23-44D14, complete sequence 40 4.4
25gb|AC183991.2| Pan troglodytes BAC clone CH251-80D2 from chromos... 40 4.4
26emb|AL356278.8| Human DNA sequence from clone RP11-515J24 on chr... 40 4.4
27gb|AC182640.3| Pan troglodytes BAC clone CH251-352K16 from chrom... 40 4.4
28emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P... 40 4.4
29emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, ... 40 4.4
30emb|AL080254.1|ATF21C20 Arabidopsis thaliana DNA chromosome 4, B... 40 4.4
31emb|AL928631.4| Mouse DNA sequence from clone RP23-240K15 on chr... 40 4.4
32gb|AC009237.3| Homo sapiens BAC clone RP11-440D17 from 2, comple... 40 4.4
33gb|AC171016.2| Gallus gallus BAC clone CH261-29C12 from chromoso... 40 4.4
34gb|AC025716.2| Caenorhabditis elegans cosmid Y39G10AR, complete ... 40 4.4
35gb|AC154005.4| Mus musculus 6 BAC RP24-82B18 (Roswell Park Cance... 40 4.4
36ref|XM_314118.2| Anopheles gambiae str. PEST ENSANGP00000003760 ... 40 4.4
37gb|AF079888.1|AF079888 Gallus gallus immunoglobulin light chain ... 40 4.4
38gb|AC154489.2| Mus musculus BAC clone RP23-205G15 from chromosom... 40 4.4
39gb|AC069509.16| Homo sapiens 3 BAC RP11-406M8 (Roswell Park Canc... 40 4.4 
>gb|AC125643.3| Rattus norvegicus 4 BAC CH230-55N7 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216677

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 60    agtgataaaacaaatgtatggt 81
             ||||||||||||||||||||||
Sbjct: 23376 agtgataaaacaaatgtatggt 23355
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>gb|AC099466.7| Rattus norvegicus 4 BAC CH230-63I9 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 227298

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 60     agtgataaaacaaatgtatggt 81
              ||||||||||||||||||||||
Sbjct: 120317 agtgataaaacaaatgtatggt 120296
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>gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, complete sequence
          Length = 172025

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 54    aacaaaagtgataaaacaaatg 75
             ||||||||||||||||||||||
Sbjct: 77500 aacaaaagtgataaaacaaatg 77479
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>gb|AC132422.3| Mus musculus BAC clone RP23-302G15 from 12, complete sequence
          Length = 151358

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 54    aacaaaagtgataaaacaaatg 75
             ||||||||||||||||||||||
Sbjct: 35558 aacaaaagtgataaaacaaatg 35579
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>gb|AC148005.3| Mus musculus BAC clone RP23-295O6 from 12, complete sequence
          Length = 151918

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 54    aacaaaagtgataaaacaaatg 75
             ||||||||||||||||||||||
Sbjct: 82773 aacaaaagtgataaaacaaatg 82752
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>ref|NM_197639.1| Oryza sativa (japonica cultivar-group) putative outer envelope
            protein (OSJNBa0082M15.3), mRNA
          Length = 3275

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 290  ttgctagatcttcctgcagggatctgagactgg 322
            ||||||| |||||| ||||| ||||||||||||
Sbjct: 2888 ttgctagctcttccagcaggaatctgagactgg 2856



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 164  aacttcctgatgttcttgtatatcggcaccagagcgaggagcgcgatctgcaaatgctcg 223
            |||||| ||||||| | |||||| ||||| || || |  || |||||||  | |||||| 
Sbjct: 3014 aacttcttgatgttttggtatattggcacgagggcaataagggcgatctcaagatgctcc 2955

                                                        
Query: 224  gagctgttcaggcggatgccgacctgcccggtccccttgttgct 267
            |||||||| ||||| ||||| || || || || |||||||||||
Sbjct: 2954 gagctgttgaggcgaatgccaacttgaccagttcccttgttgct 2911
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>gb|AY290033.1| Succisa pratensis tRNA-Lys (trnK) gene, intron; and maturase K
           gene, partial cds; chloroplast genes for chloroplast
           products
          Length = 1111

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 8   aaagcaacatttcttttttct 28
           |||||||||||||||||||||
Sbjct: 263 aaagcaacatttcttttttct 283
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>emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on chromosome 13 Contains the
              SPRY2 gene for sprouty homolog 2 (Drosophila) and a CpG
              island, complete sequence
          Length = 191652

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 40     caaagattggaaaaaacaaaa 60
              |||||||||||||||||||||
Sbjct: 169061 caaagattggaaaaaacaaaa 169081
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>ref|XM_779059.1| PREDICTED: Strongylocentrotus purpuratus similar to centrosome
           protein 4 (LOC578922), mRNA
          Length = 888

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 288 ggttgctagatcttcctgcag 308
           |||||||||||||||||||||
Sbjct: 156 ggttgctagatcttcctgcag 136
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>emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63
          Length = 198777

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 50     aaaaaacaaaagtgataaaacaaat 74
              ||||||| |||||||||||||||||
Sbjct: 120183 aaaaaactaaagtgataaaacaaat 120159
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>emb|AL022197.2|ATM7J2 Arabidopsis thaliana DNA chromosome 4, P1 clone M7J2 (ESSA project)
          Length = 80386

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 50    aaaaaacaaaagtgataaaacaaat 74
             ||||||| |||||||||||||||||
Sbjct: 34635 aaaaaactaaagtgataaaacaaat 34659
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>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
              sequence
          Length = 158550

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 290    ttgctagatcttcctgcagggatctgagactgg 322
              ||||||| |||||| ||||| ||||||||||||
Sbjct: 109540 ttgctagctcttccagcaggaatctgagactgg 109508



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                          
Query: 164    aacttcctgatgttcttgtatatcggcaccagagcgaggagcgcgatctgcaaatgctcg 223
              |||||| ||||||| | |||||| ||||| || || |  || |||||||  | |||||| 
Sbjct: 109666 aacttcttgatgttttggtatattggcacgagggcaataagggcgatctcaagatgctcc 109607

                                                          
Query: 224    gagctgttcaggcggatgccgacctgcccggtccccttgttgct 267
              |||||||| ||||| ||||| || || || || |||||||||||
Sbjct: 109606 gagctgttgaggcgaatgccaacttgaccagttcccttgttgct 109563
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>gb|AC093913.2| Homo sapiens BAC clone RP11-768G3 from 4, complete sequence
          Length = 192059

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 58     aaagtgataaaacaaatgtat 78
              |||||||||||||||||||||
Sbjct: 128916 aaagtgataaaacaaatgtat 128936
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 290      ttgctagatcttcctgcagggatctgagactgg 322
                ||||||| |||||| ||||| ||||||||||||
Sbjct: 20954851 ttgctagctcttccagcaggaatctgagactgg 20954883



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                            
Query: 164      aacttcctgatgttcttgtatatcggcaccagagcgaggagcgcgatctgcaaatgctcg 223
                |||||| ||||||| | |||||| ||||| || || |  || |||||||  | |||||| 
Sbjct: 20954725 aacttcttgatgttttggtatattggcacgagggcaataagggcgatctcaagatgctcc 20954784

                                                            
Query: 224      gagctgttcaggcggatgccgacctgcccggtccccttgttgct 267
                |||||||| ||||| ||||| || || || || |||||||||||
Sbjct: 20954785 gagctgttgaggcgaatgccaacttgaccagttcccttgttgct 20954828
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>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 131209

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     tcaggaaagcaacatttcttt 23
             |||||||||||||||||||||
Sbjct: 84385 tcaggaaagcaacatttcttt 84365
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>gb|AF178688.1|AF178688 Arabidopsis thaliana homeobox protein (FWA) gene, FWA-1 allele,
           complete cds
          Length = 5429

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 50  aaaaaacaaaagtgataaaacaaat 74
           ||||||| |||||||||||||||||
Sbjct: 749 aaaaaactaaagtgataaaacaaat 725
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>emb|AJ327395.1|HSA327395 Homo sapiens genomic sequence surrounding NotI site, clone NL6-AO3R
          Length = 756

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 16  atttcttttttcttacaaagc 36
           |||||||||||||||||||||
Sbjct: 729 atttcttttttcttacaaagc 709
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>dbj|AK072270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008M11, full
            insert sequence
          Length = 3464

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 290  ttgctagatcttcctgcagggatctgagactgg 322
            ||||||| |||||| ||||| ||||||||||||
Sbjct: 3034 ttgctagctcttccagcaggaatctgagactgg 3002



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 164  aacttcctgatgttcttgtatatcggcaccagagcgaggagcgcgatctgcaaatgctcg 223
            |||||| ||||||| | |||||| ||||| || || |  || |||||||  | |||||| 
Sbjct: 3160 aacttcttgatgttttggtatattggcacgagggcaataagggcgatctcaagatgctcc 3101

                                                        
Query: 224  gagctgttcaggcggatgccgacctgcccggtccccttgttgct 267
            |||||||| ||||| ||||| || || || || |||||||||||
Sbjct: 3100 gagctgttgaggcgaatgccaacttgaccagttcccttgttgct 3057
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>emb|BX470216.11| Mouse DNA sequence from clone RP23-390M8 on chromosome 4, complete
            sequence
          Length = 162454

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   acaaaagtgataaaacaaatg 75
            |||||||||||||||||||||
Sbjct: 3826 acaaaagtgataaaacaaatg 3846
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 290      ttgctagatcttcctgcagggatctgagactgg 322
                ||||||| |||||| ||||| ||||||||||||
Sbjct: 20966115 ttgctagctcttccagcaggaatctgagactgg 20966147



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                            
Query: 164      aacttcctgatgttcttgtatatcggcaccagagcgaggagcgcgatctgcaaatgctcg 223
                |||||| ||||||| | |||||| ||||| || || |  || |||||||  | |||||| 
Sbjct: 20965989 aacttcttgatgttttggtatattggcacgagggcaataagggcgatctcaagatgctcc 20966048

                                                            
Query: 224      gagctgttcaggcggatgccgacctgcccggtccccttgttgct 267
                |||||||| ||||| ||||| || || || || |||||||||||
Sbjct: 20966049 gagctgttgaggcgaatgccaacttgaccagttcccttgttgct 20966092
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>ref|XM_429518.1| PREDICTED: Gallus gallus LOC417531 (LOC417531), mRNA
          Length = 1619

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gagcgaggagcgcgatctgc 214
           ||||||||||||||||||||
Sbjct: 601 gagcgaggagcgcgatctgc 620
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>ref|XM_655620.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3108.2), mRNA
          Length = 1944

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 156 tgtccagcaacttcctgatg 175
           ||||||||||||||||||||
Sbjct: 288 tgtccagcaacttcctgatg 307
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>gb|AC092161.3| Homo sapiens BAC clone RP11-590C23 from 7, complete sequence
          Length = 47811

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    acatttcttttttcttacaa 33
             ||||||||||||||||||||
Sbjct: 41142 acatttcttttttcttacaa 41161
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>gb|AC107638.17| Mus musculus, clone RP23-44D14, complete sequence
          Length = 231286

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 50     aaaaaacaaaagtgataaaacaaatgta 77
              ||||||||||||| |||||| |||||||
Sbjct: 108324 aaaaaacaaaagtaataaaaaaaatgta 108297
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>gb|AC183991.2| Pan troglodytes BAC clone CH251-80D2 from chromosome 2, complete
             sequence
          Length = 152207

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 5     aggaaagcaacatttcttttttct 28
             ||||||||||| ||||||||||||
Sbjct: 20280 aggaaagcaacttttcttttttct 20257
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>emb|AL356278.8| Human DNA sequence from clone RP11-515J24 on chromosome 6, complete
              sequence
          Length = 182510

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 49     gaaaaaacaaaagtgataaaacaa 72
              |||||||||||||| |||||||||
Sbjct: 170444 gaaaaaacaaaagttataaaacaa 170467
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>gb|AC182640.3| Pan troglodytes BAC clone CH251-352K16 from chromosome 7, complete
             sequence
          Length = 180187

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    acatttcttttttcttacaa 33
             ||||||||||||||||||||
Sbjct: 59336 acatttcttttttcttacaa 59317
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>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
             novel gene, the 5' end of the TCF8 gene for transcription
             factor 8 (represses interleukin 2 expression)
             (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
             pseudogene similar to part of serine palmitoyltransferase,
             long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1,
             LCB1, SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    gaaaaaacaaaagtgataaa 68
             ||||||||||||||||||||
Sbjct: 64652 gaaaaaacaaaagtgataaa 64671
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>emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 53
          Length = 197568

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     catttcttttttcttacaaa 34
              ||||||||||||||||||||
Sbjct: 157039 catttcttttttcttacaaa 157020
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>emb|AL080254.1|ATF21C20 Arabidopsis thaliana DNA chromosome 4, BAC clone F21C20 (ESSA project)
          Length = 69563

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    catttcttttttcttacaaa 34
             ||||||||||||||||||||
Sbjct: 61556 catttcttttttcttacaaa 61537
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>emb|AL928631.4| Mouse DNA sequence from clone RP23-240K15 on chromosome 4, complete
              sequence
          Length = 178426

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     agcaacatttcttttttctt 29
              ||||||||||||||||||||
Sbjct: 129793 agcaacatttcttttttctt 129774
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>gb|AC009237.3| Homo sapiens BAC clone RP11-440D17 from 2, complete sequence
          Length = 170102

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     aggaaagcaacatttcttttttct 28
             ||||||||||| ||||||||||||
Sbjct: 79167 aggaaagcaacttttcttttttct 79190
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>gb|AC171016.2| Gallus gallus BAC clone CH261-29C12 from chromosome ul, complete sequence
          Length = 168140

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    tcttcctgcagggatctgag 317
              ||||||||||||||||||||
Sbjct: 148935 tcttcctgcagggatctgag 148954
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>gb|AC025716.2| Caenorhabditis elegans cosmid Y39G10AR, complete sequence
          Length = 132558

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 215    aaatgctcggagctgttcaggcggatgc 242
              ||||||||||||| ||| ||||||||||
Sbjct: 122943 aaatgctcggagcagttgaggcggatgc 122916
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>gb|AC154005.4| Mus musculus 6 BAC RP24-82B18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 181556

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     cttttttcttacaaagctgg 39
              ||||||||||||||||||||
Sbjct: 132166 cttttttcttacaaagctgg 132185
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>ref|XM_314118.2| Anopheles gambiae str. PEST ENSANGP00000003760
           (ENSANGG00000003007), partial mRNA
          Length = 5601

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 tgctagatcttcctgcaggg 310
           ||||||||||||||||||||
Sbjct: 876 tgctagatcttcctgcaggg 857
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>gb|AF079888.1|AF079888 Gallus gallus immunoglobulin light chain gene, 5' DNaseI
            hypersensitive site sequence
          Length = 8699

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  tcttcctgcagggatctgag 317
            ||||||||||||||||||||
Sbjct: 6123 tcttcctgcagggatctgag 6104
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>gb|AC154489.2| Mus musculus BAC clone RP23-205G15 from chromosome 14, complete
             sequence
          Length = 210483

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   aaggatcatcttccaggcct 126
             ||||||||||||||||||||
Sbjct: 65950 aaggatcatcttccaggcct 65931
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>gb|AC069509.16| Homo sapiens 3 BAC RP11-406M8 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 152832

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   attggaaaaaacaaaagtga 64
            ||||||||||||||||||||
Sbjct: 5226 attggaaaaaacaaaagtga 5207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,536,935
Number of Sequences: 3902068
Number of extensions: 4536935
Number of successful extensions: 94322
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94224
Number of HSP's gapped (non-prelim): 98
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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