ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450082.1| Oryza sativa (japonica cultivar-group), mRNA 80 7e-12
2gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-1... 80 7e-12
3gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA... 80 7e-12
4gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar N... 80 7e-12
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
7dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
8dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 80 7e-12
10emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa... 80 7e-12
11dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochond... 80 7e-12
12gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 44 0.40
13emb|AL732319.17| Mouse DNA sequence from clone RP23-180O4 on chr... 44 0.40
14gb|AC148293.6| Medicago truncatula clone mth2-16c13, complete se... 42 1.6
15gb|AC151958.2| Homo sapiens chromosome X clone RP11-76K17 map q2... 40 6.2
16gb|AC151962.1| Homo sapiens chromosome X clone RP11-76K17 map q2... 40 6.2
17gb|AC134468.4| Mus musculus BAC clone RP23-97J21 from chromosome... 40 6.2
18gb|AC124084.8| Mus musculus chromosome 15, clone RP24-410P21, co... 40 6.2
19emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chro... 40 6.2
20gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosom... 40 6.2
21emb|AL031158.1|SPBC25D12 S.pombe chromosome II cosmid c25D12 40 6.2
22gb|AF070481.1|AF070481 Schizosaccharomyces pombe minichromosome ... 40 6.2
23gb|AC019342.8|AC019342 Homo sapiens, clone RP11-21D15, complete ... 40 6.2
24dbj|AK034808.1| Mus musculus 12 days embryo embryonic body betwe... 40 6.2
25gb|AC025271.7|AC025271 Homo sapiens chromosome 15 clone CTD-2515... 40 6.2
26gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, comp... 40 6.2
27emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in ... 40 6.2
28gb|AC138112.4| Mus musculus BAC clone RP24-291E8 from 3, complet... 40 6.2
29gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, compl... 40 6.2
30gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone... 40 6.2 
>ref|XM_450082.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 546

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                       
Query: 70  atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
           ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 1   atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 59

                           
Query: 130 tgaaggaagctcaata 145
           ||||||| ||||||||
Sbjct: 60  tgaaggaggctcaata 75
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>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion,
             complete genome
          Length = 491515

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                         
Query: 70    atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
             ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 56425 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 56483

                             
Query: 130   tgaaggaagctcaata 145
             ||||||| ||||||||
Sbjct: 56484 tgaaggaggctcaata 56499
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>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion,
             complete genome
          Length = 490673

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                         
Query: 70    atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
             ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 55930 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 55988

                             
Query: 130   tgaaggaagctcaata 145
             ||||||| ||||||||
Sbjct: 55989 tgaaggaggctcaata 56004
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>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare
             mitochondrion, complete genome
          Length = 490669

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                         
Query: 70    atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
             ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 55930 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 55988

                             
Query: 130   tgaaggaagctcaata 145
             ||||||| ||||||||
Sbjct: 55989 tgaaggaggctcaata 56004
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                            
Query: 70       atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
                ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 20579037 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 20578979

                                
Query: 130      tgaaggaagctcaata 145
                ||||||| ||||||||
Sbjct: 20578978 tgaaggaggctcaata 20578963
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                           
Query: 70      atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
               ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 1477719 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 1477661

                               
Query: 130     tgaaggaagctcaata 145
               ||||||| ||||||||
Sbjct: 1477660 tgaaggaggctcaata 1477645
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>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1512_E04
          Length = 157848

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                         
Query: 70    atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
             ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 95832 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 95774

                             
Query: 130   tgaaggaagctcaata 145
             ||||||| ||||||||
Sbjct: 95773 tgaaggaggctcaata 95758
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>dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0018I03
          Length = 145818

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                        
Query: 70   atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
            ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 5963 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 5905

                            
Query: 130  tgaaggaagctcaata 145
            ||||||| ||||||||
Sbjct: 5904 tgaaggaggctcaata 5889
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                            
Query: 70       atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
                ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 20505251 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 20505193

                                
Query: 130      tgaaggaagctcaata 145
                ||||||| ||||||||
Sbjct: 20505192 tgaaggaggctcaata 20505177
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>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 143618

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                         
Query: 70    atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
             ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 14196 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 14254

                             
Query: 130   tgaaggaagctcaata 145
             ||||||| ||||||||
Sbjct: 14255 tgaaggaggctcaata 14270
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>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete
             genome
          Length = 490520

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                         
Query: 70    atgccaagggatatgctgataaagatgggcaaaaagaaagcaagggtatacgtttatcct 129
             ||||| |||||| ||||||||||||||| | |||| || ||||||||||| |||||||||
Sbjct: 55880 atgccgagggatctgctgataaagatggacgaaaa-aaggcaagggtatatgtttatcct 55938

                             
Query: 130   tgaaggaagctcaata 145
             ||||||| ||||||||
Sbjct: 55939 tgaaggaggctcaata 55954
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 342     gtattctgaaccagagaatcaa 363
               ||||||||||||||||||||||
Sbjct: 4708508 gtattctgaaccagagaatcaa 4708487
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>emb|AL732319.17| Mouse DNA sequence from clone RP23-180O4 on chromosome X, complete
             sequence
          Length = 151503

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 54    tagcaaaaatggcttaatgcca 75
             ||||||||||||||||||||||
Sbjct: 84575 tagcaaaaatggcttaatgcca 84554
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>gb|AC148293.6| Medicago truncatula clone mth2-16c13, complete sequence
          Length = 117793

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 29    tagataaa-ctgagacatgtagtatatag 56
             |||||||| ||||||||||||||||||||
Sbjct: 81015 tagataaagctgagacatgtagtatatag 80987
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>gb|AC151958.2| Homo sapiens chromosome X clone RP11-76K17 map q28, complete sequence
          Length = 43290

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    agatgggcaaaaagaaagca 111
             ||||||||||||||||||||
Sbjct: 37032 agatgggcaaaaagaaagca 37051
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>gb|AC151962.1| Homo sapiens chromosome X clone RP11-76K17 map q28, complete sequence
          Length = 42078

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agatgggcaaaaagaaagca 111
            ||||||||||||||||||||
Sbjct: 4100 agatgggcaaaaagaaagca 4119
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>gb|AC134468.4| Mus musculus BAC clone RP23-97J21 from chromosome 12, complete sequence
          Length = 234400

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    acctgggtcagatggttttt 294
              ||||||||||||||||||||
Sbjct: 121048 acctgggtcagatggttttt 121067
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>gb|AC124084.8| Mus musculus chromosome 15, clone RP24-410P21, complete sequence
          Length = 183447

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 200    atcagacaagtcagccttgatggg 223
              ||||||||||||||||||| ||||
Sbjct: 121652 atcagacaagtcagccttgttggg 121675
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>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete
              sequence
          Length = 209619

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    tcagagcagcaacacctggg 281
              ||||||||||||||||||||
Sbjct: 133612 tcagagcagcaacacctggg 133631
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>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete sequence
          Length = 209280

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    tcagagcagcaacacctggg 281
              ||||||||||||||||||||
Sbjct: 203291 tcagagcagcaacacctggg 203310
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>emb|AL031158.1|SPBC25D12 S.pombe chromosome II cosmid c25D12
          Length = 15926

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 99   caaaaagaaagcaagggtat 118
            ||||||||||||||||||||
Sbjct: 7941 caaaaagaaagcaagggtat 7960
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>gb|AF070481.1|AF070481 Schizosaccharomyces pombe minichromosome maintenance protein Mcm7p
           (mcm7+) gene, complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  caaaaagaaagcaagggtat 118
           ||||||||||||||||||||
Sbjct: 318 caaaaagaaagcaagggtat 299
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>gb|AC019342.8|AC019342 Homo sapiens, clone RP11-21D15, complete sequence
          Length = 79673

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   ggctttctgtgtttcaggtg 423
             ||||||||||||||||||||
Sbjct: 75762 ggctttctgtgtttcaggtg 75743
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>dbj|AK034808.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430041K17 product:unclassifiable, full insert
           sequence
          Length = 3180

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 262 tcagagcagcaacacctggg 281
           ||||||||||||||||||||
Sbjct: 27  tcagagcagcaacacctggg 46
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>gb|AC025271.7|AC025271 Homo sapiens chromosome 15 clone CTD-2515H24 map 15q21.3, complete
              sequence
          Length = 191330

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     cttagataaactgagacatg 46
              ||||||||||||||||||||
Sbjct: 174237 cttagataaactgagacatg 174218
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>gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, complete sequence
          Length = 207974

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 200   atcagacaagtcagccttgatggg 223
             ||||||||||||||||||| ||||
Sbjct: 26010 atcagacaagtcagccttgttggg 25987
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>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5,
             complete sequence
          Length = 178961

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   ttaacagctgcgcttgtatt 346
             ||||||||||||||||||||
Sbjct: 25922 ttaacagctgcgcttgtatt 25941
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>gb|AC138112.4| Mus musculus BAC clone RP24-291E8 from 3, complete sequence
          Length = 173988

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ataaactgagacatgtagta 51
             ||||||||||||||||||||
Sbjct: 80502 ataaactgagacatgtagta 80521
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>gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, complete sequence
          Length = 223030

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 86     tgataaagatgggcaaaaagaaag 109
              ||||||||||||||| ||||||||
Sbjct: 212826 tgataaagatgggcataaagaaag 212849
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>gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone rp23-141k23, complete
              sequence
          Length = 188804

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 86     tgataaagatgggcaaaaagaaag 109
              ||||||||||||||| ||||||||
Sbjct: 140464 tgataaagatgggcataaagaaag 140441


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,013,214
Number of Sequences: 3902068
Number of extensions: 4013214
Number of successful extensions: 71217
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71055
Number of HSP's gapped (non-prelim): 151
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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