ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 pr... 30 1.0
2SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 29 2.3
3PEPA1_RABIT (P28712) Pepsin II-1 precursor (EC 3.4.23.1) (Pepsin A) 29 2.3
4UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.... 29 3.0
5SYI_BUCAP (Q8K9Z2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 29 3.0
6EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2... 29 3.0
7CLC14_MOUSE (Q8VCP9) C-type lectin domain family 14 member A pre... 29 3.0
8RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1... 28 4.0
9PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A) 28 4.0
10PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Peps... 28 4.0
11HAP1_YEAST (P12351) Heme-responsive zinc finger transcription fa... 28 5.2
12MTSS1_HUMAN (O43312) Metastasis suppressor protein 1 (Missing in... 28 6.8
13NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41 28 6.8
14Y1349_METJA (Q58744) Hypothetical protein MJ1349 28 6.8
15NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleopo... 27 8.8
16BIOA_CORGL (P46395) Adenosylmethionine-8-amino-7-oxononanoate am... 27 8.8
17GLY1_ASHGO (O74267) Threonine aldolase (EC 4.1.2.5) 27 8.8

>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC|
           2.7.11.1)
          Length = 901

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -2

Query: 409 SPQENLYLQHNF 374
           SPQENLYLQHNF
Sbjct: 890 SPQENLYLQHNF 901



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>SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 935

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 26  AKHTPQSEKMLNTVDENIMLICRETNNRKTTTHLHVSASYRTGLINCGHSTYK 184
           AK  P   K  N  D+N+    R+T+  K T  LH    Y  G ++ GH+  K
Sbjct: 22  AKREPAMLK--NWYDKNLYQQIRQTSKGKKTFILHDGPPYANGNLHLGHAVNK 72



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>PEPA1_RABIT (P28712) Pepsin II-1 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
 Frame = +2

Query: 11  YASLQAKH-TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHS 175
           Y S+ A   TP  + M N   V E++  +   +N  K +  +   + +SY TG +N    
Sbjct: 186 YPSISASDATPVFDNMWNEGLVSEDLFSVYLSSNGEKGSMVMFGGIDSSYYTGSLNWVPV 245

Query: 176 TYKYKWQL*DDRINLQRNASRC*KSFQYVLYIARSSL 286
           +++  WQ+  D I +      C  S Q V+    S L
Sbjct: 246 SHEGYWQITMDSITINGETIACADSCQAVVDTGTSLL 282



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>UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 262

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 360 RSAENMETVCRF--KFRLCDLLLWPFRREDLAI*STYWKDF*HLEAFLCRLIRS 205
           +  E+++ V R   + R+ + LLW     +L    TYW DF  ++  L R IRS
Sbjct: 201 KELEDIDLVIRSSGEIRISNFLLWHIAYSELFFVDTYWPDFRKID--LWRAIRS 252



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>SYI_BUCAP (Q8K9Z2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 938

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 17  SLQAKHTPQSEKML-NTVDENIMLICRETNNRKTTTHLHVSASYRTGLINCGHSTYK 184
           S++A  + +  K+L N  D N+  + R+    K    LH    Y  G I+ GH+  K
Sbjct: 16  SMRANLSQKEPKILKNWYDNNLYKLIRQKKEGKKIFFLHDGPPYANGNIHIGHAVNK 72



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>EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)|
           (Exo-1,3-beta-glucanase)
          Length = 429

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 47  EKMLNTVDENIMLICRETNNRKTTTHLHVSASYRTGLINC 166
           E++  T+DE+I ++C +     T  H +V   +   L +C
Sbjct: 285 EEVGRTIDEHISVVCEQGKETLTEAHWNVVGEWSAALTDC 324



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>CLC14_MOUSE (Q8VCP9) C-type lectin domain family 14 member A precursor|
          Length = 459

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 153 PVL*LADTCKCVVVFLLLVSLQISIIFSSTVLSIFSLC 40
           PV    DT   VV  L+ +++ + ++ + TVL +F LC
Sbjct: 376 PVSLTFDTSSTVVFILVSIAVIVLVVLTITVLGLFKLC 413



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>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
           (Helicase-like protein NHL)
          Length = 1400

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 240 HLEAFLCRLIRSSYNCHLYL*VE----WPQLMSPVL*LADTCK 124
           HL+  LCR   +S +CH Y  VE      +L SP+L + D  K
Sbjct: 157 HLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVK 199



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>PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
 Frame = +2

Query: 35  TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHSTYKYKWQL* 202
           TP  + M N   V +++  +   +++ K +  +   + +SY TG +N    +Y+  WQ+ 
Sbjct: 195 TPVFDNMWNEGLVSQDLFSVYLSSDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQIT 254

Query: 203 DDRINLQRNASRC*KSFQYV-------LYIARSSLRNGQSNRSQSLNLKRQTVSMFSA 355
            D +++      C  S Q +       L    S++ N QS    S NL  + V   SA
Sbjct: 255 MDSVSINGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVISCSA 312



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>PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
 Frame = +2

Query: 35  TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHSTYKYKWQL* 202
           TP  + M N   V +++  +   +++ K +  +   + +SY TG +N    +Y+  WQ+ 
Sbjct: 195 TPVFDNMWNEGLVSQDLFSVYLSSDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQIT 254

Query: 203 DDRINLQRNASRC*KSFQYV-------LYIARSSLRNGQSNRSQSLNLKRQTVSMFSA 355
            D +++      C  S Q +       L    S++ N QS    S NL  + V   SA
Sbjct: 255 MDSVSINGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVISCSA 312



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>HAP1_YEAST (P12351) Heme-responsive zinc finger transcription factor HAP1|
           (Heme activator protein 1) (CYP1 activatory protein)
          Length = 1483

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 17  SLQAKHTPQSEKMLNTVDENIMLICRETNNRKTTTHLH 130
           SL++ +TP+S  +    DE+  L+   T +  + +H+H
Sbjct: 139 SLKSYNTPESSNLFMGSDEHTTLVNANTGSASSASHMH 176



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>MTSS1_HUMAN (O43312) Metastasis suppressor protein 1 (Missing in metastasis|
           protein) (Metastasis suppressor YGL-1)
          Length = 755

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 14  ASLQAKHTPQSEKMLNTVDENIMLICRETNNR 109
           A L  + TPQ E MLN +   + L    TN+R
Sbjct: 718 ADLSPRDTPQGEDMLNAIRRGVKLKKTTTNDR 749



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>NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41|
          Length = 615

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 74  NIMLICRETNNRKTTTHLHVSASYRTGLINCGHST 178
           N  ++C   NN++ TT  H+S +    L+   H T
Sbjct: 231 NSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHET 265



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>Y1349_METJA (Q58744) Hypothetical protein MJ1349|
          Length = 360

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 156 SPVL*LADTCKCVVVFLLLVSLQISIIFSSTVLSIFSLCGVCF-AC 22
           SPV    D C C++V   +V   IS  F  TV+     CG C+ AC
Sbjct: 41  SPVKFECDECSCIIVPADIVEHPISAEFCKTVVYDVP-CGACYDAC 85



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>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
           (153 kDa nucleoporin)
          Length = 1468

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 393 CTCSTTSDEMPRSAENME 340
           C+CS  +DE+PR  EN E
Sbjct: 67  CSCSVNADEVPRWPENRE 84



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>BIOA_CORGL (P46395) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase|
           (EC 2.6.1.62) (7,8-diamino-pelargonic acid
           aminotransferase) (DAPA aminotransferase)
          Length = 423

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 112 DNYTLTRICELQNRTHQLWPFHL*IQV-----AIIGRPNQSTKKCLQMLKILPVRTLYS* 276
           D +T   +C+ +N  H LW   L  Q+      + G   Q+  + L+ +++L   T+ + 
Sbjct: 147 DTFTAMSVCDPENGMHSLWKGTLPEQIFAPAPPVRGSSPQAISEYLRSMELLIDETVSAI 206

Query: 277 ILSP 288
           I+ P
Sbjct: 207 IIEP 210



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>GLY1_ASHGO (O74267) Threonine aldolase (EC 4.1.2.5)|
          Length = 382

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 120 HTYTYLRATEQD-SSTVAIPLINTSGNYRTTESIYKEMPPD 239
           H YT+  A     S  +  P+I ++GNY T E I K   PD
Sbjct: 98  HVYTHEAAGLAILSQAMVTPVIPSNGNYLTLEDIKKHYIPD 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,090,198
Number of Sequences: 219361
Number of extensions: 1205246
Number of successful extensions: 3085
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3085
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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