ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25c09 |
|---|---|
| Clone Library Name | barley_pub |
>CH60_PORPU (P51349) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 528 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = -3 Query: 165 TQDAG*DVCTVCVDFNWAGSHVPVTRPRMIWINDGEQGTLAGRCDQI 25 T+DAG + TV +D V VT+ I DG + T+ RC+QI Sbjct: 302 TEDAGFSLDTVQLDMLGKARRVVVTKDSTTIIADGHEATVKSRCEQI 348
>LPQH_MYCAV (P46733) Lipoprotein lpqH precursor (19 kDa lipoprotein antigen)| Length = 161 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +3 Query: 123 NRHIRYIHPNPRLVSCLVTGLQ--DKNYPSLVTDARHQRSSPSSSFTGPPASSG 278 NR +R+ P +++ +V+G +K+ PS SS SSS T P ASSG Sbjct: 2 NRQLRFAVAGPEILAAVVSGCSSGNKSAPS---------SSASSSSTSPSASSG 46
>SUFI_ECOLI (P26648) Protein sufI precursor| Length = 470 Score = 29.6 bits (65), Expect = 1.8 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = +3 Query: 138 YIHPNPRLVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTGPPASSGA*SKMLRSGPGWL 317 + P+ LVS LV L+ LVTD+ R P+ G P S S L PG Sbjct: 308 FFEPSSILVSTLVLTLRPTGLLPLVTDSLPMRLLPTEIMAGSPIRSRDIS--LGDDPG-- 363 Query: 318 SSSGDLW-ASSLEQVPSVSAWKQLAARS 398 +G LW + ++ W++ R+ Sbjct: 364 -INGQLWDVNRIDVTAQQGTWERWTVRA 390
>NFYA3_ARATH (Q93ZH2) Nuclear transcription factor Y subunit A-3 (AtNF-YA-3)| (Transcriptional activator HAP2C) Length = 340 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +2 Query: 41 PASVPCSPSLIQIIRGRVTGTWLPAQLKSTHTVHTS*PASCVVSRYRFTRQKL 199 P + C+P ++ +I GRV LPA+L T V + + R R R KL Sbjct: 152 PQAPTCNPQMVSMIPGRVP---LPAELTETDPVFVNAKQYHAIMRRRQQRAKL 201
>OTC_RHOPA (Q6N0J0) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)| Length = 310 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -2 Query: 340 AHRSPELDSQ--PGPDRSIFDQAPEEAGGPVKDDEGLLRWCLASV 212 AHR E+ + GP +FD+A + +G+L WCL +V Sbjct: 269 AHRGEEVTDEVIDGPQSVVFDEAENR----LHAQKGILAWCLGAV 309
>SUFI_SALTY (P0A1C5) Protein sufI precursor| Length = 470 Score = 28.9 bits (63), Expect = 3.1 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = +3 Query: 138 YIHPNPRLVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTGPPASSGA*SKMLRSGPGWL 317 + P+ LVS LV L+ LVTD R P+ +G P S S L PG Sbjct: 308 FFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPTEIMSGAPVRSRDIS--LGDDPG-- 363 Query: 318 SSSGDLW-ASSLEQVPSVSAWKQLAARS 398 +G LW + ++ W++ R+ Sbjct: 364 -INGQLWDVNRIDITAQQGTWERWTVRA 390
>SUFI_SALTI (P0A1C6) Protein sufI precursor| Length = 470 Score = 28.9 bits (63), Expect = 3.1 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = +3 Query: 138 YIHPNPRLVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTGPPASSGA*SKMLRSGPGWL 317 + P+ LVS LV L+ LVTD R P+ +G P S S L PG Sbjct: 308 FFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPTEIMSGAPVRSRDIS--LGDDPG-- 363 Query: 318 SSSGDLW-ASSLEQVPSVSAWKQLAARS 398 +G LW + ++ W++ R+ Sbjct: 364 -INGQLWDVNRIDITAQQGTWERWTVRA 390
>CORO7_HUMAN (P57737) Coronin-7 (70 kDa WD repeat tumor rejection antigen| homolog) Length = 925 Score = 28.5 bits (62), Expect = 4.0 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Frame = +3 Query: 147 PNPRLVSCLVTG---LQDKNYPSLVTDARHQRSSPSSSFTGPPASSGA*SKMLRSGPGWL 317 P+P SCLV L D P+ V + + S F+ PP+S + S GP Sbjct: 391 PHPSFTSCLVPPAEPLPDTAQPA-VMETPVGDADASEGFSSPPSSLTSPSTPSSLGPSLS 449 Query: 318 SSSGDLWASSLEQVPSV 368 S+SG + SL + S+ Sbjct: 450 STSGIGTSPSLRSLQSL 466
>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like| protein 1) Length = 870 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +3 Query: 234 SSPSSSFTGPPASSGA*SKMLRSGPGWLSSSGDLWASSLEQVPSV 368 S P+ G P +SG + + S LSSSG+L S EQ+P V Sbjct: 548 SDPAVHVPGTPGTSG--NSVTPSANSSLSSSGELGQPSGEQMPQV 590
>SWS_DROME (Q9U969) Protein Swiss cheese| Length = 1425 Score = 28.1 bits (61), Expect = 5.3 Identities = 25/99 (25%), Positives = 37/99 (37%) Frame = +2 Query: 2 PINPDTHHIWSQRPASVPCSPSLIQIIRGRVTGTWLPAQLKSTHTVHTS*PASCVVSRYR 181 PIN T Q P P S + +++ V+GT S S V+R Sbjct: 336 PINSQTSQSSRQAPNGPPMVISQMNLMQSAVSGTG-------------SSGVSVTVTRPP 382 Query: 182 FTRQKLSKPRYRCKTPTQQPLVVLYGTTRFFGGLIEDAP 298 + + S+ + P P +GTT F + DAP Sbjct: 383 SSPSRHSREEHTLSDPNPNPDGSFHGTTNLFTEVHGDAP 421
>DED1_KLULA (Q6CLR3) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 627 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 Query: 237 SPSSSFTGPPASSGA*SKMLRSGPGWLSSSGDLWASSLEQVPSVSAW 377 +PS F+ SSG S GW +SSG+ W +S S S W Sbjct: 581 APSGGFSSGGGSSGGWGNGGGSSGGWGNSSGN-WGNSSNSSNSNSGW 626
>MYPT1_MOUSE (Q9DBR7) Protein phosphatase 1 regulatory subunit 12A (Myosin| phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) Length = 1004 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = +3 Query: 159 LVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTG---PPASSGA*SKMLRSGPGWLSSS 326 L+SC V P++ + A QRS PSS+ T PP SS A ++ S W S Sbjct: 562 LISCSVPSTTST--PTVTSAAGLQRSLPSSTSTAAKTPPGSSSAGTQSSTSNRLWAEDS 618
>FOLD_STRTR (P96050) FolD bifunctional protein [Includes:| Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] Length = 284 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/25 (40%), Positives = 20/25 (80%), Gaps = 1/25 (4%) Frame = +2 Query: 14 DTHHIWSQRPASVPCSPS-LIQIIR 85 +T ++W+ RP VPC+P+ +++I+R Sbjct: 126 NTGNLWNGRPQMVPCTPAGIMEILR 150
>EPHB4_MOUSE (P54761) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor MDK-2) (Developmental kinase 2) (Tyrosine kinase MYK-1) Length = 987 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = +3 Query: 189 DKNYPSLVTDARHQRSSPSS---SFTGPPASSGA 281 D+ P V+D R RSSPSS S+ P A SGA Sbjct: 430 DREVPPAVSDIRVTRSSPSSLILSWAIPRAPSGA 463
>NCK2_HUMAN (O43639) Cytoplasmic protein NCK2 (NCK adaptor protein 2) (SH2/SH3| adaptor protein NCK-beta) (Nck-2) Length = 380 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +3 Query: 180 GLQDKNYPSLVTD--ARHQRSSPSSSFTGPPAS 272 GL KNY +++D A H +P S+TGP +S Sbjct: 245 GLVPKNYVVVLSDGPALHPAHAPQISYTGPSSS 277
>UBP28_HUMAN (Q96RU2) Ubiquitin carboxyl-terminal hydrolase 28 (EC 3.1.2.15)| (Ubiquitin thioesterase 28) (Ubiquitin-specific-processing protease 28) (Deubiquitinating enzyme 28) Length = 1077 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +1 Query: 109 ACPVEIDTYGTYILTRVLCRVSLQVYK--TKTIQASLQMQDT 228 +CP E DT+ T L+ V C VS Q K T T +S ++ T Sbjct: 460 SCPPESDTHMTLPLSSVHCSVSDQTSKESTSTESSSQDVEST 501
>VD4L_CWPXG (O73579) Ankyrin repeat protein D4L/I2R| Length = 672 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 123 NRHIRYIHPNPRLVSCLVTGLQDKNYPSLV 212 NR IRY++P P L + D ++PS V Sbjct: 532 NRDIRYLYPEPLLACIRYALILDDDFPSKV 561
>CH60_GRATL (Q6B911) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 528 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -3 Query: 165 TQDAG*DVCTVCVDFNWAGSHVPVTRPRMIWINDGEQGTLAGRCDQI 25 TQD G + ++ +D + V +T+ + D ++ + RCDQI Sbjct: 302 TQDMGLSLDSMSLDQLGSARRVQITKDSTTIVADAQKDLIQARCDQI 348
>CD97_BOVIN (Q8SQA4) CD97 antigen precursor| Length = 734 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +3 Query: 231 RSSPSSSFTGPPASSGA*SKMLRSGPGWLSSSGDLWASSLEQVPSVS 371 ++S + + PP SS R PG++S SG+++ LE ++ Sbjct: 27 QNSKACALPCPPNSSCVNGTACRCAPGFISFSGEIFTDPLESCDDIN 73
>SOK2_YEAST (P53438) Protein SOK2| Length = 785 Score = 27.3 bits (59), Expect = 9.0 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%) Frame = +3 Query: 189 DKNYPSLVTDARHQRSSPSSSFT---GPPASSGA*SKMLRSGPGWLSSSGDL-------- 335 +K Y + +HQ+ + T PP A SK +SGP SSSG + Sbjct: 198 EKTYSTFEQQQQHQQQQQLQAQTYPAQPPKIGNAFSKFSKSGPPSDSSSGSMSPNSNRTS 257 Query: 336 ----WASSLEQVPSVSAWKQ 383 SSL Q P +S + Q Sbjct: 258 RNSNSISSLAQQPPMSNYPQ 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,537,886 Number of Sequences: 219361 Number of extensions: 1279969 Number of successful extensions: 3387 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3264 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3382 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
