ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25c08 |
|---|---|
| Clone Library Name | barley_pub |
>AROF_SOLTU (P21357) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast| precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) Length = 538 Score = 34.7 bits (78), Expect = 0.057 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = -3 Query: 377 SMTRRESAPSLYPSCSQHSKW*GSRVFMGRPDMSKIQFLLGSSN 246 S+TRR+S LY CS H W G R + D + ++FL G +N Sbjct: 328 SLTRRDSTSGLYYDCSAHFLWVGERT--RQLDGAHVEFLRGIAN 369
>AROG_LYCES (P37216) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast| precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) Length = 541 Score = 32.7 bits (73), Expect = 0.22 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = -3 Query: 377 SMTRRESAPSLYPSCSQHSKW*GSRVFMGRPDMSKIQFLLGSSN 246 S+TRR+S L+ CS H W G R + D + ++FL G +N Sbjct: 328 SLTRRDSTSGLHYDCSAHFLWVGERT--RQLDGAHVEFLRGIAN 369
>AROF_ARATH (P29976) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast| precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) Length = 525 Score = 32.3 bits (72), Expect = 0.28 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -3 Query: 377 SMTRRESAPSLYPSCSQHSKW*GSRVFMGRPDMSKIQFLLGSSN 246 S+TR +S LY CS H W G R + D + ++FL G +N Sbjct: 314 SLTRLDSTSGLYYDCSAHMVWCGERT--RQLDGAHVEFLRGIAN 355
>AROG_ARATH (Q00218) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast| precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) Length = 507 Score = 32.0 bits (71), Expect = 0.37 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -3 Query: 377 SMTRRESAPSLYPSCSQHSKW*GSRVFMGRPDMSKIQFLLGSSN 246 ++TR +S LY CS H W G R + D + ++FL G +N Sbjct: 291 ALTREDSTSGLYYDCSAHMLWVGERT--RQLDGAHVEFLRGIAN 332
>AROF_TOBAC (P27608) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast| precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) Length = 542 Score = 31.6 bits (70), Expect = 0.48 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -3 Query: 377 SMTRRESAPSLYPSCSQHSKW*GSRVFMGRPDMSKIQFLLGSSN 246 S+TR +S LY CS H W G R + D + ++FL G +N Sbjct: 329 SLTRLDSTSGLYYDCSAHFIWVGERT--RQLDGAHVEFLRGVAN 370
>AROG_SOLTU (P37822) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast| precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) Length = 511 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -3 Query: 377 SMTRRESAPSLYPSCSQHSKW*GSRVFMGRPDMSKIQFLLGSSN 246 ++TR +S L+ CS H W G R + D + ++FL G +N Sbjct: 301 ALTREDSTSGLFYDCSAHMVWVGERT--RQLDGAHVEFLRGVAN 342
>AROF_LYCES (P37215) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast| precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) Length = 511 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -3 Query: 377 SMTRRESAPSLYPSCSQHSKW*GSRVFMGRPDMSKIQFLLGSSN 246 ++TR +S L+ CS H W G R + D + ++FL G +N Sbjct: 301 ALTREDSTSGLFYDCSAHMVWVGERT--RQLDGAHVEFLRGVAN 342
>SYE_PROMA (Q7VDB2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 476 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 12/64 (18%) Frame = +3 Query: 63 LSLNTTGRQ--------NIQSFLTGGYITASLTNFMA----NPPNHVHELSTNTKSTSRF 206 L LN GR+ +I F T GY + ++TN+M +PP + E T +S+S F Sbjct: 240 LILNKDGRKLSKRDGVTSISDFKTMGYTSQAMTNYMTLLGWSPPEGMGEKFTLKESSSVF 299 Query: 207 RLSR 218 R Sbjct: 300 DFDR 303
>SYE_SYNEL (Q8DLI5) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 485 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 12/64 (18%) Frame = +3 Query: 63 LSLNTTGRQ--------NIQSFLTGGYITASLTNFMA----NPPNHVHELSTNTKSTSRF 206 L LN+TG++ +I F GY+ +L N+M +PP V EL T + F Sbjct: 240 LILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHF 299 Query: 207 RLSR 218 R Sbjct: 300 SFER 303
>MYOA_DICDI (P22467) Myosin IA heavy chain (Myosin-like protein abmA)| Length = 994 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -1 Query: 292 EDQICLRSNFSWALQTLESEMYKAHLESRNLDVDFVFVLSSCT*FGGFAMKLVKL 128 E +CL +N L TL S +Y HL + L +F + G +K VK+ Sbjct: 894 EHDLCLETNKKTVLITLLSNLYSKHLNGKELVFEFKDSIQYRNQKGPSELKFVKV 948
>SYE_SYNPX (Q7U581) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 477 Score = 28.5 bits (62), Expect = 4.1 Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 13/114 (11%) Frame = +3 Query: 63 LSLNTTGRQ--------NIQSFLTGGYITASLTNFMANPPNHVHELSTNTKSTSRFRLSR 218 L LN GR+ +I F T GY ++ N+M + S RF L Sbjct: 239 LILNAEGRKLSKRDGVTSINDFRTMGYTAEAIANYMT-----LLGWSVPEGMEERFTLPE 293 Query: 219 CALYISDSSV*RAQEKLDLRHI-WSS----HENPASSPL*MLTAAWIERRGTLP 365 A S V +A + D + W + H PA L L W E+ TLP Sbjct: 294 AAAVFSFDRVNKAGARFDWDKLNWLNGQVLHALPAQQLLDDLRPLWAEQGWTLP 347
>Y766_HAEIN (P44868) Probable tRNA/rRNA methyltransferase HI0766 (EC 2.1.1.-)| Length = 160 Score = 28.5 bits (62), Expect = 4.1 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 5/115 (4%) Frame = -1 Query: 364 GRVPRRSIQAAVNIQSGEEAGFSWEDQICLRSNFSW--ALQTLESEMYKAHLESRNLDVD 191 G + R + E GF+W+D+ RS + + + ++A LES Sbjct: 16 GNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRL 75 Query: 190 FVFVLSSCT*FGGFAMKLVKLAVM*PPVRKL*IFCL---PVVFKLRSPMVLPYRS 35 F C KL + P R + + L P+ K+R PM RS Sbjct: 76 FALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRS 130
>FLT3L_MOUSE (P49772) SL cytokine precursor (Fms-related tyrosine kinase 3| ligand) (Flt3 ligand) (Flt3L) Length = 232 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Frame = -3 Query: 278 SKIQFLLGSSNT*VRDV*SASRKSKPRC*FRICTKFVHMIRWICHE-------IG*ACSD 120 SK+Q LL NT + V S + + P C + T H+++ C + IG AC + Sbjct: 93 SKMQTLLEDVNTEIHFVTSCTFQPLPECLRFVQTNISHLLKDTCTQLLALKPCIGKACQN 152 Query: 119 VASC*E 102 + C E Sbjct: 153 FSRCLE 158
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = +3 Query: 45 GRTIGDLSLNTTGRQNIQSFLTGGYITASLTNFMANPPNHVHELSTNTKSTSRFR 209 G++IG+ T +++F TGG T + + P N + + TN+ +R R Sbjct: 314 GQSIGEPGTQLT----LRTFHTGGVFTGDIAEHIRTPFNGIIQFDTNSVYPTRTR 364 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,758,261 Number of Sequences: 219361 Number of extensions: 1041014 Number of successful extensions: 2412 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2412 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
