Clone Name | rbastl25c07 |
---|---|
Clone Library Name | barley_pub |
>SYA_ARATH (P36428) Alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7)| (Alanine--tRNA ligase) (AlaRS) Length = 1003 Score = 51.6 bits (122), Expect = 1e-06 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Frame = -1 Query: 463 TDEASNKAVIYAGVPPDAPNGFKVLD---WLTPSIAPXXXXXXXXXXXXXXXXGSDASRV 293 TDE++NKAV+ AGV P+ + FK LD WLT ++ P G+DAS+V Sbjct: 929 TDESTNKAVVCAGV-PEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQV 987 Query: 292 KEAMELATQIASMKLS 245 + A+++A+ ASMKL+ Sbjct: 988 QAALDMASSFASMKLN 1003
>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein| 18) (Small proline-rich-like epidermal differentiation complex protein 5A) Length = 118 Score = 32.0 bits (71), Expect = 0.79 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Frame = -3 Query: 431 CRRTSGCTQWLQGVGLAYTFNRTTQGKRRRRQEWSCPGP-------GK*CFSGQGGNGAC 273 C +SG +G G + +R Q RRR Q SC G G C GG+G C Sbjct: 52 CGSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCC 111 Query: 272 Y 270 + Sbjct: 112 H 112
>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (Ca(v)3.3) Length = 2223 Score = 30.0 bits (66), Expect = 3.0 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = -3 Query: 227 SSYILSGCLMVVLTLLSQIVMREHKIIHENQLEAVSIFTLQDVV*SSQLSCNYSLVYQME 48 S ++++ CL+V+ T S+ REH+++ E + +S T+ ++ Y ++Q Sbjct: 386 SFFMINLCLVVIATQFSETKQREHRLMLEQRQRYLSSSTVASY---AEPGDCYEEIFQYV 442 Query: 47 CYI*R 33 C+I R Sbjct: 443 CHILR 447
>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (CaVT.3) Length = 2201 Score = 30.0 bits (66), Expect = 3.0 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = -3 Query: 227 SSYILSGCLMVVLTLLSQIVMREHKIIHENQLEAVSIFTLQDVV*SSQLSCNYSLVYQME 48 S ++++ CL+V+ T S+ REH+++ E + +S T+ ++ Y ++Q Sbjct: 384 SFFMINLCLVVIATQFSETKQREHRLMLEQRQRYLSSSTVASY---AEPGDCYEEIFQYV 440 Query: 47 CYI*R 33 C+I R Sbjct: 441 CHILR 445
>DHSD_MOUSE (Q9CXV1) Succinate dehydrogenase [ubiquinone] cytochrome b small| subunit, mitochondrial precursor (CybS) (Succinate-ubiquinone reductase membrane anchor subunit) (QPs3) (CII-4) (Succinate dehydrogenase complex subunit D) (Succinate-ubiquinone Length = 159 Score = 29.6 bits (65), Expect = 3.9 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -2 Query: 444 RLLYMPAYLRMHPMASRCWIG-LHLQ-SHHSREEEAAARMVLPRAREVMLLG 295 R Y+ A+L+ P RC +HL SHHS + A+ R V+LLG Sbjct: 27 RPAYVSAFLQDQPTQGRCGTQHIHLSPSHHSGSKAASLHWTSERVVSVLLLG 78
>K0286_MOUSE (Q6ZQE4) Protein KIAA0286| Length = 437 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/61 (22%), Positives = 28/61 (45%) Frame = -3 Query: 332 WSCPGPGK*CFSGQGGNGACYPDSFDEAELIC*DWSSYILSGCLMVVLTLLSQIVMREHK 153 WS GPG C+ GG GA W +++GC++ ++ ++++E + Sbjct: 10 WSAVGPGPRCWGAGGGGGA--------------TWLLLVVAGCVVCGSADVNVVMLQESQ 55 Query: 152 I 150 + Sbjct: 56 V 56
>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)| Length = 2570 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +2 Query: 203 SSHLICMKTSLN-KSAQLHRSYLGSKLHCLLDPRSITSLALGK 328 S H C+ T LN + + H Y+G L CL + LG+ Sbjct: 2145 SEHANCLSTGLNTRRCECHAGYVGDGLQCLEESEPPVDRCLGQ 2187 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,820,894 Number of Sequences: 219361 Number of extensions: 1343850 Number of successful extensions: 2978 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2928 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2976 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)