ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507134.1| PREDICTED Oryza sativa (japonica cultivar-group... 103 5e-19
2ref|XM_480154.1| Oryza sativa (japonica cultivar-group), mRNA 103 5e-19
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
4dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
5dbj|AK099134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
6dbj|AK070325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
7gb|BT017514.1| Zea mays clone EL01N0419B06.c mRNA sequence 86 1e-13
8gb|AY108535.1| Zea mays PCO135925 mRNA sequence 86 1e-13
9gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete seq... 84 4e-13
10emb|AJ223326.1|DCAJ3326 Daucus carota mRNA for DNA topoisomerase I 66 1e-07
11emb|Y14558.1|PSY14558 Pisum sativum mRNA for topoisomerase I 46 0.095
12gb|AC101738.16| Mus musculus chromosome 1, clone RP23-472N5, com... 44 0.38
13gb|AC162299.6| Mus musculus chromosome 1, clone RP24-320H7, comp... 44 0.38
14ref|NM_124913.2| Arabidopsis thaliana TOP1 (TOPOISOMERASE I) AT5... 40 5.9
15gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, comp... 40 5.9
16emb|CR318646.27| Zebrafish DNA sequence from clone DKEY-83F18 in... 40 5.9
17emb|BX664743.23| Zebrafish DNA sequence from clone DKEY-11D20 in... 40 5.9
18emb|BX510909.19| Zebrafish DNA sequence from clone DKEY-195E19 i... 40 5.9
19emb|CR846087.30| Zebrafish DNA sequence from clone DKEY-196N19 i... 40 5.9
20emb|AL162393.15| Human DNA sequence from clone RP11-534I8 on chr... 40 5.9
21emb|AL035669.43|HS885L7 Human DNA sequence from clone RP5-885L7 ... 40 5.9
22gb|AY080864.1| Arabidopsis thaliana putative DNA topoisomerase I... 40 5.9
23emb|AL591172.3| Zebrafish DNA sequence from clone BUSM1-48C11 Co... 40 5.9
24emb|CR293521.11| Zebrafish DNA sequence from clone CH211-152F22 ... 40 5.9
25emb|BX088603.12| Zebrafish DNA sequence from clone DKEYP-44D3, c... 40 5.9
26emb|BX119905.13| Zebrafish DNA sequence from clone CH211-209H17,... 40 5.9
27emb|BX323555.10| Zebrafish DNA sequence from clone DKEY-163M14 i... 40 5.9
28gb|AC011731.8|AC011731 Homo sapiens, clone RP11-17J14, complete ... 40 5.9
29emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in... 40 5.9
30emb|BX004992.13| Zebrafish DNA sequence from clone CH211-120E13 ... 40 5.9
31emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 i... 40 5.9
32emb|BX088560.7| Zebrafish DNA sequence from clone DKEY-237O15 in... 40 5.9
33emb|AJ504425.1|CGR504425 Cricetulus griseus partial mRNA for mul... 40 5.9
34gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, co... 40 5.9
35emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 i... 40 5.9
36emb|BX936450.6| Zebrafish DNA sequence from clone CH211-232I12 i... 40 5.9
37emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on ch... 40 5.9
38gb|U60440.1|DCU60440 Daucus carota topoisomerase I (Top1) mRNA, ... 40 5.9 
>ref|XM_507134.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1066_B03.125 mRNA
          Length = 3327

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                        
Query: 148  gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 206
            |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 3171 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3114

                                
Query: 207  aaacaccgagctcttccttt 226
            ||||||||||||||||||||
Sbjct: 3113 aaacaccgagctcttccttt 3094



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 12   tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 71
            |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3303 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3244

                            
Query: 72   tgtcggcccaaatgca 87
              || |||||||||||
Sbjct: 3243 cctcagcccaaatgca 3228



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 98/120 (81%)
 Strand = Plus / Minus

                                                                        
Query: 315  ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 374
            |||||| |||||||||||||| ||||| |||||||||||   ||| || ||||  |  | 
Sbjct: 3003 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2944

                                                                        
Query: 375  cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 434
             ||| ||||||||||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 2943 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2884
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>ref|XM_480154.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3327

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                        
Query: 148  gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 206
            |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 3171 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3114

                                
Query: 207  aaacaccgagctcttccttt 226
            ||||||||||||||||||||
Sbjct: 3113 aaacaccgagctcttccttt 3094



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 12   tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 71
            |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3303 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3244

                            
Query: 72   tgtcggcccaaatgca 87
              || |||||||||||
Sbjct: 3243 cctcagcccaaatgca 3228



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 98/120 (81%)
 Strand = Plus / Minus

                                                                        
Query: 315  ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 374
            |||||| |||||||||||||| ||||| |||||||||||   ||| || ||||  |  | 
Sbjct: 3003 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2944

                                                                        
Query: 375  cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 434
             ||| ||||||||||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 2943 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2884
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                           
Query: 148     gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 206
               |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 3136305 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3136248

                                   
Query: 207     aaacaccgagctcttccttt 226
               ||||||||||||||||||||
Sbjct: 3136247 aaacaccgagctcttccttt 3136228



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                           
Query: 12      tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 71
               |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3136437 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3136378

                               
Query: 72      tgtcggcccaaatgca 87
                 || |||||||||||
Sbjct: 3136377 cctcagcccaaatgca 3136362



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                      
Query: 315     ctcttagaatctgaaatccggctcgacatccattgccca 353
               |||||| |||||||||||||| ||||| |||||||||||
Sbjct: 3136137 ctcttaaaatctgaaatccgggtcgacgtccattgccca 3136099



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                               
Query: 387     cttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 434
               |||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 3135762 cttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 3135715
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>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1066_B03
          Length = 115339

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                         
Query: 148   gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 206
             |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 95789 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 95732

                                 
Query: 207   aaacaccgagctcttccttt 226
             ||||||||||||||||||||
Sbjct: 95731 aaacaccgagctcttccttt 95712



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 12    tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 71
             |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 95921 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 95862

                             
Query: 72    tgtcggcccaaatgca 87
               || |||||||||||
Sbjct: 95861 cctcagcccaaatgca 95846



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 315   ctcttagaatctgaaatccggctcgacatccattgccca 353
             |||||| |||||||||||||| ||||| |||||||||||
Sbjct: 95621 ctcttaaaatctgaaatccgggtcgacgtccattgccca 95583



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 387   cttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 434
             |||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 95246 cttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 95199
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>dbj|AK099134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050E19, full
            insert sequence
          Length = 3326

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                        
Query: 148  gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 206
            |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 3170 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3113

                                
Query: 207  aaacaccgagctcttccttt 226
            ||||||||||||||||||||
Sbjct: 3112 aaacaccgagctcttccttt 3093



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 12   tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 71
            |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3302 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3243

                            
Query: 72   tgtcggcccaaatgca 87
              || |||||||||||
Sbjct: 3242 cctcagcccaaatgca 3227



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 98/120 (81%)
 Strand = Plus / Minus

                                                                        
Query: 315  ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 374
            |||||| |||||||||||||| ||||| |||||||||||   ||| || ||||  |  | 
Sbjct: 3002 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2943

                                                                        
Query: 375  cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 434
             ||| ||||||||||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 2942 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2883
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>dbj|AK070325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A13, full
            insert sequence
          Length = 3347

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                        
Query: 148  gcctacaaagagaatgccgggtgcttcctt-cttccaggagcagggagacttcaaaaaac 206
            |||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||||||
Sbjct: 3191 gcctacaatgagaatgccgggtgcttccttccttccaggagcaggg-gacttc-aaaaac 3134

                                
Query: 207  aaacaccgagctcttccttt 226
            ||||||||||||||||||||
Sbjct: 3133 aaacaccgagctcttccttt 3114



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 12   tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 71
            |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3323 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3264

                            
Query: 72   tgtcggcccaaatgca 87
              || |||||||||||
Sbjct: 3263 cctcagcccaaatgca 3248



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 98/120 (81%)
 Strand = Plus / Minus

                                                                        
Query: 315  ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 374
            |||||| |||||||||||||| ||||| |||||||||||   ||| || ||||  |  | 
Sbjct: 3023 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2964

                                                                        
Query: 375  cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 434
             ||| ||||||||||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 2963 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2904
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>gb|BT017514.1| Zea mays clone EL01N0419B06.c mRNA sequence
          Length = 522

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Plus

                                                                       
Query: 319 tagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttg 378
           ||||||||||| ||||| || || |||||||||||| |||| || || || |  |  |||
Sbjct: 287 tagaatctgaattccgggtcaacgtccattgcccatacaaatttcgcgaggagagatttg 346

                                                                      
Query: 379 ctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattctagg 437
            |||||||||||||||||||||||||||||  |||||||||||| || || ||||||||
Sbjct: 347 ttgaaaatcttctcaatagggacttcatggcgtttgcaccatgccacggttattctagg 405



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 43/47 (91%), Gaps = 2/47 (4%)
 Strand = Plus / Plus

                                                          
Query: 148 gcctacaaagagaatgccgggtgc-ttccttc-ttccaggagcaggg 192
           |||||||||||||||| ||||||| ||||||| ||||| ||||||||
Sbjct: 119 gcctacaaagagaatgacgggtgctttccttcgttccacgagcaggg 165



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 200 aaaaaacaaacaccgagctctt 221
           ||||||||||||||||||||||
Sbjct: 181 aaaaaacaaacaccgagctctt 202
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>gb|AY108535.1| Zea mays PCO135925 mRNA sequence
          Length = 1700

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                        
Query: 319  tagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttg 378
            ||||||||||| ||||| || || |||||||||||| |||| || || || |  |  |||
Sbjct: 1382 tagaatctgaattccgggtcaacgtccattgcccatacaaatttcgcgaggagagatttg 1323

                                                                       
Query: 379  ctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattctagg 437
             |||||||||||||||||||||||||||||  |||||||||||| || || ||||||||
Sbjct: 1322 ttgaaaatcttctcaatagggacttcatggcgtttgcaccatgccacggttattctagg 1264



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 43/47 (91%), Gaps = 2/47 (4%)
 Strand = Plus / Minus

                                                           
Query: 148  gcctacaaagagaatgccgggtgc-ttccttc-ttccaggagcaggg 192
            |||||||||||||||| ||||||| ||||||| ||||| ||||||||
Sbjct: 1550 gcctacaaagagaatgacgggtgctttccttcgttccacgagcaggg 1504



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 200  aaaaaacaaacaccgagctctt 221
            ||||||||||||||||||||||
Sbjct: 1488 aaaaaacaaacaccgagctctt 1467
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>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence
          Length = 138518

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Minus

                                                                          
Query: 148    gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagac-ttcaaaaaa 205
              ||||||||||||||||||  ||||||||||| |||||||||||||| ||| || ||||||
Sbjct: 106729 gcctacaaagagaatgccaagtgcttccttcgttccaggagcagggggacattgaaaaaa 106670

                                
Query: 206    caaacaccgagctcttcc 223
              ||||| ||||||||||||
Sbjct: 106669 caaactccgagctcttcc 106652
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>emb|AJ223326.1|DCAJ3326 Daucus carota mRNA for DNA topoisomerase I
          Length = 3086

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                        
Query: 318  ttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtctt 377
            ||||||||||||   |||||| ||||||||||||||  |||||||||| ||||  | |||
Sbjct: 2855 ttagaatctgaagctcggctcaacatccattgcccaggcaaactttgccagaagagactt 2796

                                         
Query: 378  gctgaaaatcttctcaatagggacttcat 406
            | |||| ||||||||||| || |||||||
Sbjct: 2795 gttgaacatcttctcaatgggaacttcat 2767
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>emb|Y14558.1|PSY14558 Pisum sativum mRNA for topoisomerase I
          Length = 3055

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 320  agaatctgaaatccggctcgacatccattgcccatccaaactttgca 366
            ||||||||||||| || || ||||||||||||||  |||| ||||||
Sbjct: 2838 agaatctgaaatctgggtccacatccattgcccaagcaaattttgca 2792
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>gb|AC101738.16| Mus musculus chromosome 1, clone RP23-472N5, complete sequence
          Length = 183026

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 305    gaatccaatactcttagaatct 326
              ||||||||||||||||||||||
Sbjct: 125538 gaatccaatactcttagaatct 125559
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>gb|AC162299.6| Mus musculus chromosome 1, clone RP24-320H7, complete sequence
          Length = 130226

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 305   gaatccaatactcttagaatct 326
             ||||||||||||||||||||||
Sbjct: 14940 gaatccaatactcttagaatct 14961
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>ref|NM_124913.2| Arabidopsis thaliana TOP1 (TOPOISOMERASE I) AT5G55310 (TOP1) mRNA,
            complete cds
          Length = 2838

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                        
Query: 320  agaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttgc 379
            |||||||||| || || || ||||||||||||||  | ||||| || ||||  | |||| 
Sbjct: 2818 agaatctgaactcaggatcaacatccattgcccaagcgaacttagccagaagagacttgt 2759

                                        
Query: 380  tgaaaatcttctcaatagggacttcatg 407
            | || ||||||||||| ||||| |||||
Sbjct: 2758 taaatatcttctcaatggggacatcatg 2731
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>gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, complete sequence
          Length = 159888

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     gttctcaacaagctaaaatt 71
              ||||||||||||||||||||
Sbjct: 147046 gttctcaacaagctaaaatt 147027
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>emb|CR318646.27| Zebrafish DNA sequence from clone DKEY-83F18 in linkage group 22,
             complete sequence
          Length = 224271

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ttaggtgtccgggagaaggc 260
             ||||||||||||||||||||
Sbjct: 72185 ttaggtgtccgggagaaggc 72166
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>emb|BX664743.23| Zebrafish DNA sequence from clone DKEY-11D20 in linkage group 22,
             complete sequence
          Length = 180012

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   ttaggtgtccgggagaaggc 260
             ||||||||||||||||||||
Sbjct: 14054 ttaggtgtccgggagaaggc 14073
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>emb|BX510909.19| Zebrafish DNA sequence from clone DKEY-195E19 in linkage group 5,
              complete sequence
          Length = 190731

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    ttaggtgtccgggagaaggc 260
              ||||||||||||||||||||
Sbjct: 165287 ttaggtgtccgggagaaggc 165306
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>emb|CR846087.30| Zebrafish DNA sequence from clone DKEY-196N19 in linkage group 8,
              complete sequence
          Length = 232595

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    ttaggtgtccgggagaaggc 260
              ||||||||||||||||||||
Sbjct: 192766 ttaggtgtccgggagaaggc 192785
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>emb|AL162393.15| Human DNA sequence from clone RP11-534I8 on chromosome 9 Contains a
              programmed cell death 2 (PDCD2) pseudogene, the 5' end of
              the gene for a novel C2H2 type zinc finger protein and two
              CpG islands, complete sequence
          Length = 184302

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 174    ccttcttccaggagcagggagact 197
              |||||| |||||||||||||||||
Sbjct: 181615 ccttctcccaggagcagggagact 181592
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>emb|AL035669.43|HS885L7 Human DNA sequence from clone RP5-885L7 on chromosome 20q13.2-13.33
             Contains the 3' end of the NTSR1 gene for high affinity
             neurotensin receptor 1, the C20orf20 gene, the OGFR gene
             for opioid growth factor receptor, the COL9A3 gene for
             collagen IX alpha 3, the C20orf143 gene, the TCFL5 gene
             for basic helix-loop-helix transcription factor-like 5,
             the ARF4P2 gene for ADP-ribosylation factor 4 pseudogene
             2, the 3' end of the DATF1 gene for death associated
             transcription factor 1, two novel genes and seven CpG
             islands, complete sequence
          Length = 160241

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   gtgtccgggagaaggcctggaagc 268
             ||||| ||||||||||||||||||
Sbjct: 27939 gtgtctgggagaaggcctggaagc 27962
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>gb|AY080864.1| Arabidopsis thaliana putative DNA topoisomerase I (At5g55310) mRNA,
           partial cds
          Length = 928

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                       
Query: 320 agaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttgc 379
           |||||||||| || || || ||||||||||||||  | ||||| || ||||  | |||| 
Sbjct: 681 agaatctgaactcaggatcaacatccattgcccaagcgaacttagccagaagagacttgt 622

                                       
Query: 380 tgaaaatcttctcaatagggacttcatg 407
           | || ||||||||||| ||||| |||||
Sbjct: 621 taaatatcttctcaatggggacatcatg 594
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>emb|AL591172.3| Zebrafish DNA sequence from clone BUSM1-48C11 Contains two novel genes,
             two novel genes for a proteins similar to MHC class II
             alpha and beta chain, the putative novel transposon LDR1
             and three CpG islands, complete sequence
          Length = 106049

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ttaggtgtccgggagaaggc 260
             ||||||||||||||||||||
Sbjct: 79439 ttaggtgtccgggagaaggc 79420
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>emb|CR293521.11| Zebrafish DNA sequence from clone CH211-152F22 in linkage group 12,
             complete sequence
          Length = 152631

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   ttaggtgtccgggagaaggc 260
             ||||||||||||||||||||
Sbjct: 22495 ttaggtgtccgggagaaggc 22514
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>emb|BX088603.12| Zebrafish DNA sequence from clone DKEYP-44D3, complete sequence
          Length = 177056

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ttaggtgtccgggagaaggc 260
             ||||||||||||||||||||
Sbjct: 22439 ttaggtgtccgggagaaggc 22420
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>emb|BX119905.13| Zebrafish DNA sequence from clone CH211-209H17, complete sequence
          Length = 50366

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  ttaggtgtccgggagaaggc 260
            ||||||||||||||||||||
Sbjct: 3014 ttaggtgtccgggagaaggc 2995
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>emb|BX323555.10| Zebrafish DNA sequence from clone DKEY-163M14 in linkage group 21,
              complete sequence
          Length = 180416

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    ttaggtgtccgggagaaggc 260
              ||||||||||||||||||||
Sbjct: 109378 ttaggtgtccgggagaaggc 109359
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>gb|AC011731.8|AC011731 Homo sapiens, clone RP11-17J14, complete sequence
          Length = 157183

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   aatcttctcaatagggactt 403
             ||||||||||||||||||||
Sbjct: 77018 aatcttctcaatagggactt 77037
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>emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in linkage group 22,
             complete sequence
          Length = 165445

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ttaggtgtccgggagaaggc 260
             ||||||||||||||||||||
Sbjct: 64351 ttaggtgtccgggagaaggc 64332
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>emb|BX004992.13| Zebrafish DNA sequence from clone CH211-120E13 in linkage group 16,
             complete sequence
          Length = 195432

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   ttaggtgtccgggagaaggc 260
             ||||||||||||||||||||
Sbjct: 47392 ttaggtgtccgggagaaggc 47411
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>emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 in linkage group 20,
             complete sequence
          Length = 146407

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   ttaggtgtccgggagaaggc 260
             ||||||||||||||||||||
Sbjct: 91527 ttaggtgtccgggagaaggc 91546
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>emb|BX088560.7| Zebrafish DNA sequence from clone DKEY-237O15 in linkage group 10,
             complete sequence
          Length = 156486

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ttaggtgtccgggagaaggc 260
             ||||||||||||||||||||
Sbjct: 24363 ttaggtgtccgggagaaggc 24344
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>emb|AJ504425.1|CGR504425 Cricetulus griseus partial mRNA for multidrug resistance-associated
           protein 1 (abcc1 gene)
          Length = 683

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 252 ggagaaggcctggaagctga 271
           ||||||||||||||||||||
Sbjct: 265 ggagaaggcctggaagctga 284
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>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence
          Length = 178509

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     gttctcaacaagctaaaatt 71
              ||||||||||||||||||||
Sbjct: 177459 gttctcaacaagctaaaatt 177478
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>emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 in linkage group 25,
              complete sequence
          Length = 196037

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    ttaggtgtccgggagaaggc 260
              ||||||||||||||||||||
Sbjct: 185657 ttaggtgtccgggagaaggc 185676
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>emb|BX936450.6| Zebrafish DNA sequence from clone CH211-232I12 in linkage group 17,
              complete sequence
          Length = 167918

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    ttaggtgtccgggagaaggc 260
              ||||||||||||||||||||
Sbjct: 117478 ttaggtgtccgggagaaggc 117459
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>emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on chromosome 14, complete
             sequence
          Length = 216611

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aatgtccatcagttctcaac 60
             ||||||||||||||||||||
Sbjct: 45954 aatgtccatcagttctcaac 45973
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>gb|U60440.1|DCU60440 Daucus carota topoisomerase I (Top1) mRNA, complete cds
          Length = 2803

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                        
Query: 340  acatccattgcccatccaaactttgcaagaatcgtcttgctgaaaatcttctcaataggg 399
            |||||||| |||||  |||| ||||| ||||  | |||| |||| |||||||||||||| 
Sbjct: 2625 acatccatagcccaagcaaattttgccagaagagacttgttgaatatcttctcaatagga 2566

                    
Query: 400  acttcatg 407
            || |||||
Sbjct: 2565 acgtcatg 2558


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,489,087
Number of Sequences: 3902068
Number of extensions: 4489087
Number of successful extensions: 88865
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 88731
Number of HSP's gapped (non-prelim): 120
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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