ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25c05 |
|---|---|
| Clone Library Name | barley_pub |
>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)| Length = 309 Score = 30.0 bits (66), Expect = 1.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -2 Query: 65 AVIRHGKWYICWMLLATSTVG 3 AV+ G W +CWM+LA+S G Sbjct: 132 AVMTSGGWRVCWMILASSWFG 152
>HRCA_CHLCV (Q824B0) Heat-inducible transcription repressor hrcA| Length = 386 Score = 28.9 bits (63), Expect = 3.5 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Frame = +1 Query: 1 RPTVDVANNIQQIYHFP---CRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTK 171 RPT + N + I+ P C + N T PV +L +E+F T T Sbjct: 278 RPTAFIGNELSDIFRTPNPQCAVITIPYYMNRTPLGAFGVLGPV---NLPYKEIFKTLTI 334 Query: 172 FQTKIDRYSTKFMFLLYDLIWRPSSSHPTIS 264 F KI T+ + RP S PT+S Sbjct: 335 FADKIKASLTQSFYKFKLSFRRPCPSDPTLS 365
>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 702 Score = 28.5 bits (62), Expect = 4.6 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -2 Query: 197 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 51 EY + +V + FVC KS P C+ +GRA H VL+F SA RH Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 340 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -1 Query: 180 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 67 G FC R + FSF + W S+++ L + + +P GGV Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209
>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1885 Score = 28.1 bits (61), Expect = 6.0 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 Query: 89 HTDNVDNMLDQYQYTLWEKENSST 160 + DNVD +L+QY+Y L+ + T Sbjct: 1614 NADNVDKLLEQYEYVLYPSRSIQT 1637
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 30 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3153 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3208
>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7124 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 30 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3096 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3151
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 30 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3150 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3205
>FGRL1_CHICK (Q7T2H2) Fibroblast growth factor receptor-like 1 precursor| Length = 487 Score = 27.7 bits (60), Expect = 7.8 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = +1 Query: 49 PCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTKFQTKIDRYSTKFMFLLYDL 228 P T D G T QC + PV KR + T +K+ + ID KF+ L Sbjct: 247 PVNTTVDYGGT--TSFQCKVRSDVKPVIQWLKRVEYGTESKYNSTIDVGGQKFVVLPTGE 304 Query: 229 IW-RPSSSH 252 +W RP S+ Sbjct: 305 VWSRPDGSY 313
>YGZB_BACSU (Q7WY74) UPF0295 protein ygzB| Length = 117 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = -1 Query: 132 VYWYWSSMLSTLSVCVVIPGGVCCNSAWEMVYLLDVIGNIHC 7 V ++W MLST +V V+ PG C+ +++ ++D+ +HC Sbjct: 55 VVYFWIGMLSTKAVRVICPG---CDKETKVLGVVDMC--MHC 91
>Y969_VIBPA (Q87R29) UPF0227 protein VP0969| Length = 179 Score = 27.7 bits (60), Expect = 7.8 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +1 Query: 136 LGKRELFHTHTKFQTKIDRYSTKFMFLLYDLIWRPSSSH--PTISLHMDEPK 285 L K + H +TK ++++++ YD+IW S SH IS H+ K Sbjct: 131 LSKEDEIHDNTKTASELEKH--------YDIIWDESQSHKFKKISQHLQAMK 174
>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| Length = 493 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = +1 Query: 40 YHFPCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTKFQTKIDRYSTKFMFLL 219 Y F C +S G N H V HS+ K L + H + +DRY + LL Sbjct: 59 YQFTCLTYKESEGALNEHMTSLASVLKVS-HSVAKLILVNFHWQVSEILDRYKSNSAQLL 117 Query: 220 YDLIWRPSSSHPTISLH 270 + +P+ S + H Sbjct: 118 VEARVQPNPSKHVPTSH 134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,485,251 Number of Sequences: 219361 Number of extensions: 1007380 Number of successful extensions: 2860 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2858 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
