Clone Name | rbastl25c05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165928 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cacacgcacacaaaattccaa 177 ||||||||||||||||||||| Sbjct: 109827 cacacgcacacaaaattccaa 109847
>gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172784 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cacacgcacacaaaattccaa 177 ||||||||||||||||||||| Sbjct: 144837 cacacgcacacaaaattccaa 144857
>gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181831 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 cacacgcacacaaaattccaa 177 ||||||||||||||||||||| Sbjct: 159030 cacacgcacacaaaattccaa 159010
>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence Length = 166104 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 243 ttcttcccatcccaccatcagccta 267 ||||||||||||||||||| ||||| Sbjct: 79289 ttcttcccatcccaccatctgccta 79313
>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence Length = 174210 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 cacacagacaatgttgacaac 109 ||||||||||||||||||||| Sbjct: 137629 cacacagacaatgttgacaac 137609
>gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162572 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 cttcttcttcccatcccacca 259 ||||||||||||||||||||| Sbjct: 123899 cttcttcttcccatcccacca 123879
>gb|AC010175.4| Homo sapiens 12 BAC RP11-118B22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127277 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 cttcttcttcccatcccacca 259 ||||||||||||||||||||| Sbjct: 110895 cttcttcttcccatcccacca 110915
>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete sequence Length = 326403 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 cacacgcacacaaaattccaa 177 ||||||||||||||||||||| Sbjct: 319584 cacacgcacacaaaattccaa 319564
>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence Length = 138404 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 agacagatactccacaaagt 205 |||||||||||||||||||| Sbjct: 98671 agacagatactccacaaagt 98652
>gb|AC125048.2| Mus musculus BAC clone RP23-364E18 from 5, complete sequence Length = 190505 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cacacaaaattccaaaccaaaata 186 |||||||||||| ||||||||||| Sbjct: 28219 cacacaaaattcaaaaccaaaata 28242
>gb|AC114461.6| Rattus norvegicus 1 BAC CH230-14J24 (Children's Hospital Oakland Research Institute) complete sequence Length = 238852 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cacatggatgaaccaaaaac 287 |||||||||||||||||||| Sbjct: 71784 cacatggatgaaccaaaaac 71803
>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5' end of a novel gene, two novel genes, the Taok1 gene for TAO kinase 1, a eukaryotic translation initiation factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2 (Rps2) pseudogene, the Cryba1 gene for crystallin beta A1 and two CpG islands, complete sequence Length = 220230 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 ataacaacacacacagacaa 99 |||||||||||||||||||| Sbjct: 65918 ataacaacacacacagacaa 65937
>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence Length = 191499 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ctgctatatgatttgatttg 233 |||||||||||||||||||| Sbjct: 187456 ctgctatatgatttgatttg 187437
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cacacaaaattccaaaccaaaata 186 ||||||||| |||||||||||||| Sbjct: 5782574 cacacaaaaatccaaaccaaaata 5782551
>emb|AL672214.8| Mouse DNA sequence from clone RP23-161C9 on chromosome X, complete sequence Length = 47355 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gctatatgatttgatttggc 235 |||||||||||||||||||| Sbjct: 15902 gctatatgatttgatttggc 15921
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cacacaaaattccaaaccaaaata 186 ||||||||| |||||||||||||| Sbjct: 12376 cacacaaaaatccaaaccaaaata 12353
>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1135_F06 Length = 102230 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cacacaaaattccaaaccaaaata 186 ||||||||| |||||||||||||| Sbjct: 72088 cacacaaaaatccaaaccaaaata 72065
>emb|AL929019.4| Zebrafish DNA sequence from clone CH211-149L13, complete sequence Length = 149316 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 aataacaacacacacagaca 98 |||||||||||||||||||| Sbjct: 5092 aataacaacacacacagaca 5073
>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence Length = 180436 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 ccaccatcagcctacacatg 273 |||||||||||||||||||| Sbjct: 107879 ccaccatcagcctacacatg 107898
>gb|AC142100.3| Mus musculus BAC clone RP24-366C18 from 18, complete sequence Length = 175110 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 agaactcttccacacgcaca 166 |||||||||||||||||||| Sbjct: 82753 agaactcttccacacgcaca 82772
>emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 in linkage group 9, complete sequence Length = 150766 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aataacaacacacacagaca 98 |||||||||||||||||||| Sbjct: 94620 aataacaacacacacagaca 94639 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,864,711 Number of Sequences: 3902068 Number of extensions: 3864711 Number of successful extensions: 77818 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77764 Number of HSP's gapped (non-prelim): 54 length of query: 288 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 266 effective length of database: 17,147,199,772 effective search space: 4561155139352 effective search space used: 4561155139352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)