ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25c04 |
|---|---|
| Clone Library Name | barley_pub |
>CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 751 Score = 117 bits (292), Expect = 2e-26 Identities = 54/90 (60%), Positives = 64/90 (71%) Frame = -3 Query: 435 LSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYV 256 LST+ LFF FYY + + QYLAAK LKKQSWRFH KY WFQRH EP+ TDE+E+G+Y+ Sbjct: 664 LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYI 723 Query: 255 YFDFHLADDGNGWCQRIKNDFTFEYNFLED 166 YFD+ W QR K FTFEY +LED Sbjct: 724 YFDY------EKWGQRKKEGFTFEYRYLED 747
>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 753 Score = 117 bits (292), Expect = 2e-26 Identities = 54/90 (60%), Positives = 64/90 (71%) Frame = -3 Query: 435 LSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYV 256 LST+ LFF FYY + + QYLAAK LKKQSWRFH KY WFQRH EP+ TDE+E+G+Y+ Sbjct: 666 LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYI 725 Query: 255 YFDFHLADDGNGWCQRIKNDFTFEYNFLED 166 YFD+ W QR K FTFEY +LED Sbjct: 726 YFDY------EKWGQRKKEGFTFEYRYLED 749
>CNOT2_MOUSE (Q8C5L3) CCR4-NOT transcription complex subunit 2 (CCR4-associated| factor 2) Length = 540 Score = 60.1 bits (144), Expect = 3e-09 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Frame = -3 Query: 426 DMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQR--HVEPQVTTDEYERGSYVY 253 D+LF+ +Y Q LAA EL + WR+H++ W R +EP + T+ YERG+Y + Sbjct: 442 DLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYF 501 Query: 252 FDFHLADDGNGWCQRIKNDFTFEYNFLED 166 FD W +++ +F EY+ LE+ Sbjct: 502 FDC------LNW-RKVAKEFHLEYDKLEE 523
>CNOT2_HUMAN (Q9NZN8) CCR4-NOT transcription complex subunit 2 (CCR4-associated| factor 2) Length = 540 Score = 60.1 bits (144), Expect = 3e-09 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Frame = -3 Query: 426 DMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQR--HVEPQVTTDEYERGSYVY 253 D+LF+ +Y Q LAA EL + WR+H++ W R +EP + T+ YERG+Y + Sbjct: 442 DLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYF 501 Query: 252 FDFHLADDGNGWCQRIKNDFTFEYNFLED 166 FD W +++ +F EY+ LE+ Sbjct: 502 FDC------LNW-RKVAKEFHLEYDKLEE 523
>NOT5_YEAST (Q12514) General negative regulator of transcription subunit 5| Length = 560 Score = 53.9 bits (128), Expect = 2e-07 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Frame = -3 Query: 426 DMLFFAFYYQQNSYQQYLAAKEL-KKQSWRFHRKYNTWFQRHVE---PQVTTDEYERGSY 259 D LFF FY+ Q SY+Q+LAA+EL K ++W F++ W+ + +E P + E E S+ Sbjct: 475 DTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKSEEE--SW 532 Query: 258 VYFDFHLADDGNGW-CQRIKNDFTF 187 YFD+ W +R NDF + Sbjct: 533 RYFDYK-----KSWLARRCGNDFVY 552
>NOT2_YEAST (P06100) General negative regulator of transcription subunit 2| Length = 191 Score = 52.4 bits (124), Expect = 7e-07 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = -3 Query: 426 DMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRH--VEPQVTTDEY-ERGSYV 256 + LFF FY + Q L EL+K++WR+H+ W + +EP V+ D ERGSYV Sbjct: 110 ETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTKDPMMEPIVSADGLSERGSYV 169 Query: 255 YFDFHLADDGNGWCQRIKNDFTFEYN 178 +F D W ++ + DF YN Sbjct: 170 FF------DPQRW-EKCQRDFLLFYN 188
>RGA_DROME (Q94547) Regulator of gene activity (Protein regena)| Length = 585 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -3 Query: 435 LSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQR--HVEPQVTTDEYERGS 262 L D+LFF FY Q +AA EL + WR+H + W R ++ ERG+ Sbjct: 488 LQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGT 547 Query: 261 YVYFD 247 + YFD Sbjct: 548 FYYFD 552
>NOT3_YEAST (P06102) General negative regulator of transcription subunit 3| Length = 836 Score = 39.7 bits (91), Expect = 0.005 Identities = 25/90 (27%), Positives = 41/90 (45%) Frame = -3 Query: 438 TLSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSY 259 TL LF+ +Y+ ++ +A K L ++ W+ + WF R E + + E G Y Sbjct: 702 TLEMFSLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDY 761 Query: 258 VYFDFHLADDGNGWCQRIKNDFTFEYNFLE 169 F DD W K +F +Y+FL+ Sbjct: 762 KIFKL---DD---WTVIDKINFRLDYSFLQ 785
>Y568_RICPR (Q9ZCY3) Hypothetical protein RP568| Length = 129 Score = 32.0 bits (71), Expect = 0.94 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Frame = +1 Query: 16 SKFKFTHKVTTYNWGICSRFQQFHSENYMSRN*ANIF-------LSPSALVWLY*QFILK 174 S F+ +V+T N+ + S +Q +SEN N NI L P+ L L ++ Sbjct: 20 SLFRIKDRVSTLNYQLRSVIKQINSEN----NNINILKAEQAYLLLPTRLEKLAAAYLKL 75 Query: 175 EVVFKCEVVLDPLAPPI 225 E+V +++ DPLAP I Sbjct: 76 EIVKSYQMINDPLAPNI 92
>RMT2_NEUCR (Q7SCW9) Arginine N-methyltransferase 2 (EC 2.1.1.-)| Length = 429 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = -3 Query: 306 HVEPQVTTDEYERGSYVYFDFHLADD-GNG 220 ++E QVT+D+Y R + Y D L DD GNG Sbjct: 189 NLEEQVTSDKYLRSTVAYSDGKLVDDAGNG 218
>CTR4_HUMAN (O43246) Cationic amino acid transporter 4 (CAT-4) (CAT4)| Length = 635 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 179 LYSNVKSFLILWHHPFPSSAR*KSKYTYDPRSYSSVVTCGSTCRWNQVLYFL 334 L S V + ++ WH P SA + Y R +V GS C N VL L Sbjct: 285 LVSTVLTLMVPWHSLDPDSALADAFYQRGYRWAGFIVAAGSICAMNTVLLSL 336
>CAF1A_YERPE (P26949) F1 capsule-anchoring protein precursor| Length = 833 Score = 28.9 bits (63), Expect = 7.9 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -3 Query: 366 KELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHLADDGNGWCQ-RIKNDFT 190 K+ K+ R+ +YN + Q + ++EY + LAD N +C+ +ND Sbjct: 419 KQKKESGQRWRVRYNKYLQSGTSLNIASEEYATEGF----NKLADTLNTYCKPNTRNDCR 474 Query: 189 FEY 181 F+Y Sbjct: 475 FDY 477
>ACDD_METTH (O27747) Acetyl-CoA decarbonylase/synthase complex delta subunit| (ACDS complex delta subunit) (Corrinoid/iron-sulfur component small subunit) Length = 389 Score = 28.9 bits (63), Expect = 7.9 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +1 Query: 160 QFILKEVVFKCEVVLDPLAPPISIICEMKIKVHVRSPLILIRRDLWLHMPL 312 +++LKE + + ++V+DP + E I V R+ L ++ D L MP+ Sbjct: 251 RYLLKEGLKREDIVMDPTTCALGYGIEFSIDVITRTRLAALKGDSDLQMPM 301
>APAF_MOUSE (O88879) Apoptotic protease-activating factor 1 (Apaf-1)| Length = 1249 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -3 Query: 405 YYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVY--FDFHLA 235 YY + +L K + Q HRK T FQR+ +P + + E Y Y +H+A Sbjct: 435 YYLHDLQVDFLTEKN-RSQLQDLHRKMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHMA 492
>NU5M_PAPHA (Q95885) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 603 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -3 Query: 495 TDSGTNCDKSCLWERLGSDTLSTDMLFFAFYYQQNSYQQYLA 370 TD+ T ++ L+ R+G L M++F +Y +QQ LA Sbjct: 162 TDANTAAIQAVLYNRIGDIGLILAMVWFLLHYNSWDFQQMLA 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,204,203 Number of Sequences: 219361 Number of extensions: 1535573 Number of successful extensions: 3454 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3385 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3447 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
