ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y114_CHLMU (Q9PLI5) Hypothetical protein TC0114 101 9e-22
2YQU3_CAEEL (Q09550) Hypothetical protein F26C11.3 precursor 29 5.9

>Y114_CHLMU (Q9PLI5) Hypothetical protein TC0114|
          Length = 122

 Score =  101 bits (251), Expect = 9e-22
 Identities = 54/79 (68%), Positives = 60/79 (75%), Gaps = 3/79 (3%)
 Frame = +1

Query: 214 LLAVLPL---TPTVDRNRTVSRRSKPNSRTTFIGEQPNPWDLLQPQDVMSRHRGAKRLRR 384
           +L   PL    PT DR++TVSRR +P+SRT  IGEQPNPWDLLQPQD MSRHRGAK  RR
Sbjct: 33  VLGTAPLKYPAPTKDRDQTVSRRFEPSSRTALIGEQPNPWDLLQPQDAMSRHRGAKPPRR 92

Query: 385 *ELLGVISLLSPAYL*SVE 441
            ELL  ISLLSP YL SV+
Sbjct: 93  YELLVAISLLSPEYLLSVK 111



 Score = 38.5 bits (88), Expect = 0.007
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = +3

Query: 129 QLSCPALLLA*QPVHHRLTQPSPLVLGLAPRSSPFNTNGR 248
           +LS  A+LLA QP HH      PLVLG AP   P  T  R
Sbjct: 9   ELSYSAMLLAKQPTHHWFVHSGPLVLGTAPLKYPAPTKDR 48



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>YQU3_CAEEL (Q09550) Hypothetical protein F26C11.3 precursor|
          Length = 1317

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 255 PNCLTTF*TQLTYHFHRRTTEPLGPSSTPGCDESTSRCQTTPSIR 389
           PNC TT   QL Y+   + T     +   GC +++S   +TPS++
Sbjct: 634 PNC-TTVLMQLIYNPSTKETRTETTTDADGCKKTSSTSSSTPSLK 677


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,266,784
Number of Sequences: 219361
Number of extensions: 1563108
Number of successful extensions: 4023
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4022
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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