>K0553_HUMAN (Q9UKJ3) Protein KIAA0553|
          Length = 1089

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 9   KERNHALLRQHLEINRHNRMPSQFLTKRTLTKQSGMNAKQCKCERKKK----LPAQEEHV 176
           K   H   ++H + ++H R P     +++   +SG  +K+ K  ++KK     PA  E  
Sbjct: 258 KSHRHKKKKEHKKSSKHKRKPKADTEEKSSKAESGEKSKKRKKRKRKKNKSSAPADSERG 317

Query: 177 PHGE 188
           P  E
Sbjct: 318 PKPE 321

>MUTS_SYMTH (Q67NK1) DNA mismatch repair protein mutS|
          Length = 875

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 325 LASIACIELWSYGHSLKGPIAYSSIMHKGLAGIVTGLFLYYSG 197
           L+   C +L     +    +AY   MHK   G V+GL +YY G
Sbjct: 227 LSGFGCEDLELATSAAGAALAYLEEMHKASLGHVSGLAVYYPG 269

>FOR3_SCHPO (O94532) Formin-3|
          Length = 1461

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +3

Query: 51  NRHNRMPSQFLTK------RTLTKQSGMNAKQCKCERKKKLPAQEEHVPHG 185
           NRH R   Q L K      R     S +N    KC +K+    +E H PHG
Sbjct: 390 NRHVRDALQLLIKEHNADARRFRSGSDVNNVDRKCVKKQMNYREESHTPHG 440

>NU4M_RHISA (O99825) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 433

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 325 LASIACIELWSYGHSLKGPIAYSSIMHKG--LAGIVT 221
           L SI C+    Y + +K  IAYSS+ H G  LAG VT
Sbjct: 248 LISIFCL----YQNDIKSLIAYSSVSHMGITLAGCVT 280

>YETK_BACSU (O31540) Hypothetical transport protein yetK|
          Length = 330

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 331 LYLASIACIELWSYGHSLKGPIAYSSIMHKGLAGIVTGLFLYYSGCPTSPCG 176
           L+    A  E  S+ +S+   + +S +++  L   V   +L+YSG    P G
Sbjct: 218 LFFLPFALFEASSFDYSVPTVLDWSYVLYYALFVTVLAFYLWYSGVTKVPAG 269

>Y1487_HAEIN (P44214) Hypothetical protein HI1487|
          Length = 186

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 89  KNPYKTVWDECKTMQMRKEKKTTGSGGTCPTWGSW 193
           K P KT+ D    ++  ++KK T    T P + SW
Sbjct: 15  KEPLKTIIDTWYKLRAERDKKLTNIFNTIPFYESW 49

>JARD2_MOUSE (Q62315) Jumonji protein (Jumonji/ARID domain-containing protein 2)|
          Length = 1234

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 42  LEINRHNRMPSQFLTKRTLTKQSGMNAKQCKCERKKKLPAQEEHVPHGEVGHPE 203
           LE NR  R  +    K  L KQ+    +   CE +     +  H PH   G PE
Sbjct: 491 LERNRPKRAAAG---KNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPE 541

>FLNB_HUMAN (O75369) Filamin-B (FLN-B) (Beta-filamin) (Actin-binding-like|
           protein) (Thyroid autoantigen) (Truncated actin-binding
           protein) (Truncated ABP) (ABP-280 homolog) (ABP-278)
           (Filamin 3) (Filamin homolog 1) (Fh1)
          Length = 2602

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 GTCPTWGSWTP*VVQK*SCDNAREPL 244
           G CP W SW P   QK   DNARE +
Sbjct: 181 GLCPDWESWDP---QK-PVDNAREAM 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,995,853
Number of Sequences: 219361
Number of extensions: 942604
Number of successful extensions: 2337
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)