ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25b09 |
|---|---|
| Clone Library Name | barley_pub |
>ADA21_HUMAN (Q9UKJ8) ADAM 21 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 21) Length = 722 Score = 31.2 bits (69), Expect = 0.65 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = +2 Query: 239 CSFGFRCSDCNCVPSEFRC-SDCNEL-LPEYC 328 C+FG C DC +PS C + NE LPE+C Sbjct: 446 CAFGLCCKDCKFMPSGELCRQEVNECDLPEWC 477
>ADA29_HUMAN (Q9UKF5) ADAM 29 precursor (A disintegrin and metalloproteinase| domain 29) Length = 820 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = +2 Query: 239 CSFGFRCSDCNCVPSEFRC-SDCNEL-LPEYC 328 C+FG C DC +PS C + NE LPE+C Sbjct: 437 CAFGLCCKDCKFLPSGKVCRKEVNECDLPEWC 468
>Y875_RICPR (Q9ZC92) Hypothetical protein RP875| Length = 174 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 4/28 (14%) Frame = -2 Query: 332 EDNIQEVIH----YNLNIGTRKEHNYNL 261 EDNI+E I+ YNL + T EHNYN+ Sbjct: 101 EDNIKEAINFIVTYNLTLITLVEHNYNI 128
>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 20) Length = 726 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +2 Query: 239 CSFGFRCSDCNCVPSEFRC----SDCNELLPEYC 328 C+FG C DC +PS C +C+ LPE+C Sbjct: 447 CAFGICCKDCKFLPSGTLCRQQVGECD--LPEWC 478
>ADA22_XENLA (O42596) ADAM 22 precursor (A disintegrin and metalloproteinase| domain 22) (Metalloprotease-disintegrin MDC11b) (MDC11.2) Length = 935 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = +2 Query: 239 CSFGFRCSDCNCVPSEFRC----SDCNELLPEYCLQSTLQ 346 CS G CS+C P E C +DC+ +PE C +T Q Sbjct: 487 CSDGLCCSNCKFNPKEMLCREAVNDCD--IPETCTGNTSQ 524
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Frame = +2 Query: 224 CRL*LCS-FGFRCSDCNCVPSEFRCS---DCNELLPE 322 C++ CS FRC+D C+P RC+ DC++ E Sbjct: 2586 CKVSTCSTVEFRCADGTCIPRSARCNQNMDCSDASDE 2622 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = +2 Query: 251 FRCSDCNCVPSEFRC---SDCNELLPEY-CLQSTLQ 346 F CS+ NC+P E +C DC + E CL++ ++ Sbjct: 3767 FTCSNRNCIPMELQCDSLDDCGDGSDEQGCLKTPIE 3802 Score = 27.7 bits (60), Expect = 7.2 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = +2 Query: 251 FRCSDCNCVPSEFRCSDCNE 310 F+C + NC+P +RC + N+ Sbjct: 3481 FQCKNNNCIPDHWRCDNQND 3500 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Frame = +2 Query: 251 FRCSDCNCVPSEFRC---SDCNELLPEYCLQSTLQTIRA 358 FRCS C+P + C +DC + E + T + R+ Sbjct: 1011 FRCSSGRCIPGHWACDGDNDCGDFSDETHINCTKEEARS 1049
>LRP2_RAT (P98158) Low-density lipoprotein receptor-related protein 2 precursor| (Megalin) (Glycoprotein 330) (gp330) Length = 4660 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = +2 Query: 242 SFGFRCSDCNCVPSEFRC---SDCNELLPEY 325 S F C++ CVPS FRC DC++ E+ Sbjct: 1027 SLSFPCNNGKCVPSFFRCDGVDDCHDNSDEH 1057 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%) Frame = +2 Query: 257 CSDCNCVPSEFRC---SDC 304 CS+ C+PSE+RC SDC Sbjct: 115 CSNGQCIPSEYRCDHVSDC 133 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Frame = +2 Query: 215 LPMCRL*LCSFG-FRCSDCNCVPSEFRC---SDCNELLPE 322 L C + CS G F C++ CV FRC +DC + E Sbjct: 2987 LQNCTMRTCSAGEFSCANGRCVRQSFRCDRRNDCGDYSDE 3026 Score = 26.9 bits (58), Expect(2) = 2.2 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +2 Query: 251 FRCSDCNCVPSEFRCSDCNE 310 FRC+D C+PS + C N+ Sbjct: 3766 FRCADQQCIPSRWVCDQEND 3785 Score = 23.9 bits (50), Expect(2) = 9.5 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = +3 Query: 216 FRCADCNCVPS 248 FRCAD C+PS Sbjct: 3766 FRCADQQCIPS 3776 Score = 21.6 bits (44), Expect(2) = 9.5 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%) Frame = +2 Query: 251 FRCSDCNCVPSEFRC---SDC 304 F+C+ +CVP C +DC Sbjct: 3805 FQCTSGHCVPKALACDGRADC 3825 Score = 20.8 bits (42), Expect(2) = 2.2 Identities = 6/10 (60%), Positives = 9/10 (90%) Frame = +3 Query: 216 FRCADCNCVP 245 FRCA+ +C+P Sbjct: 3727 FRCANHHCIP 3736
>ADAM9_MOUSE (Q61072) ADAM 9 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 9) (Metalloprotease/disintegrin/cysteine-rich protein 9) (Myeloma cell metalloproteinase) (Meltrin gamma) Length = 845 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +2 Query: 239 CSFGFRCSDCNCVPSEFRC----SDCNELLPEYC 328 C++G C DC +P C S+C+ +PEYC Sbjct: 455 CAYGDCCKDCQFLPGGSMCRGKTSECD--VPEYC 486
>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 909 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = +2 Query: 236 LCSFGFRCSDCNCVPSEFRCSDCNEL--LPEYC 328 +C+ G C DC P+ C D + LPE+C Sbjct: 463 VCAHGLCCEDCQLKPAGTACRDSSNSCDLPEFC 495
>PSTB_MYCGA (Q7NC40) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)| (Phosphate-transporting ATPase) (ABC phosphate transporter) Length = 326 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = -2 Query: 329 DNIQEVIHYNLNIGTRKEHNY-NLNIGIRRNTIT 231 DNI E+ +YNL + +H ++N+GI++N +T Sbjct: 75 DNIFEIDNYNLWYSNKAKHALKDINLGIKKNKVT 108
>NU3M_DIDMA (P41306) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH| dehydrogenase subunit 3) Length = 116 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -3 Query: 130 TNSMLPVLIYLLAICMIDLYTRLDSSTQKICGF 32 TNS+L +I ++A + LY L+ S+ CGF Sbjct: 10 TNSLLSTIIIIIAFWLPQLYLYLEKSSPYECGF 42
>ADAM9_HUMAN (Q13443) ADAM 9 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 9) (Metalloprotease/disintegrin/cysteine-rich protein 9) (Myeloma cell metalloproteinase) (Meltrin gamma) (Cellular disintegrin-related protein) Length = 819 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +2 Query: 239 CSFGFRCSDCNCVPSEFRC----SDCNELLPEYC 328 C++G C DC +P C S+C+ +PEYC Sbjct: 455 CAYGDCCKDCRFLPGGTLCRGKTSECD--VPEYC 486
>YJJW_ECOLI (P39409) Hypothetical protein yjjW| Length = 287 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 209 VFLPMCRL*LCSFGFRCSDCNCVPSEFRCSDCNELLPEYCLQSTLQTI 352 +FL C L RC +C+ + RC+DC E +P+ C LQ + Sbjct: 26 LFLQGCNL-------RCKNCHNPWTMGRCNDCGECVPQ-CPHQALQIV 65
>MT_POTPO (P55952) Metallothionein (MT)| Length = 58 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +2 Query: 239 CSFGFRCSDCNCVPSEFRCSDCNELLPEYCLQS 337 C G +C+ C C P E S+C E C ++ Sbjct: 17 CKAGCKCTSCRCSPCEKCTSECECKSKEECAKN 49
>MT_CARMA (P55948) Metallothionein (MT)| Length = 58 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/33 (33%), Positives = 15/33 (45%) Frame = +2 Query: 239 CSFGFRCSDCNCVPSEFRCSDCNELLPEYCLQS 337 C G +C+ C C P E S C E C ++ Sbjct: 17 CKAGCKCTSCRCTPCEKCSSGCKCTTKEDCCKT 49
>DGKE_HUMAN (P52429) Diacylglycerol kinase epsilon (EC 2.7.1.107) (Diglyceride| kinase epsilon) (DGK-epsilon) (DAG kinase epsilon) Length = 567 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +2 Query: 236 LCSFGFRCSD-CNCVPS--EFRCSDCNELLPEYCLQSTLQTIRAE 361 LCS+ C C C P ++RC C + + + C++++L+ + + Sbjct: 134 LCSYCMVCKQQCGCQPKLCDYRCIWCQKTVHDECMKNSLKNEKCD 178
>ZSWM2_MOUSE (Q9D9X6) Zinc finger SWIM domain-containing protein 2| Length = 631 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +2 Query: 248 GFRCSDCNCVPSEFRCSDCNELLPEYCLQ 334 G C++CN +P E RC C E + + Q Sbjct: 232 GIPCNNCNQLPIEGRCYKCTECVEYHLCQ 260
>MRED_BACSU (Q01467) Rod shape-determining protein mreD| Length = 172 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = -3 Query: 208 NFTSLQIDQY---FVTYTFIWLYTFLVSSTNSMLPVLIYLLAICMIDLY 71 N+TSL + Y F ++ F V TN+ + +LI +LA+C+++ Y Sbjct: 70 NYTSL-LGVYMFGFAGLCYLASKAFKVLHTNAFVVILIAVLAVCLLEFY 117
>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor| (LRP) Length = 4753 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Frame = +2 Query: 236 LCSFG---FRCSDCNCVPSEFRCSDCNELLPE 322 LCS F+C + C+P E++C N+ L E Sbjct: 1053 LCSSNSTQFQCKNGRCIPKEWKCDGENDCLDE 1084
>ADA30_HUMAN (Q9UKF2) ADAM 30 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 30) Length = 790 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%) Frame = +2 Query: 239 CSFGFRCSDCNCVPSEFRC----SDCNELLPEYC 328 CS G C DC PS + C ++C+ L EYC Sbjct: 439 CSIGLCCHDCRFRPSGYVCRQEGNECD--LAEYC 470
>MLO10_ARATH (Q9FKY5) MLO-like protein 10 (AtMlo10)| Length = 569 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +1 Query: 190 SVGL*SCVPSDVQIVIVFLRIPMFRL*LCSF-RVPMFRL 303 S GL SC +D ++VIV L + + L LCS+ +P++ L Sbjct: 394 SFGLKSCFHTDFKLVIVKLSLGVGALILCSYITLPLYAL 432
>LRP8_MOUSE (Q924X6) Low-density lipoprotein receptor-related protein 8| precursor (Apolipoprotein E receptor 2) Length = 996 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +2 Query: 257 CSDCNCVPSEFRCSDCNELLPE 322 CSD C P EFRC +PE Sbjct: 195 CSDPACPPREFRCGGGGTCIPE 216
>SECY_SULAC (P49978) Preprotein translocase secY subunit (Protein transport| protein SEC61 alpha subunit homolog) Length = 463 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/59 (22%), Positives = 31/59 (52%) Frame = -3 Query: 181 YFVTYTFIWLYTFLVSSTNSMLPVLIYLLAICMIDLYTRLDSSTQKICGFCRSLALYIL 5 + + + ++ Y F +++N +LP+++ + I + LD QK G ++L+I+ Sbjct: 123 FIIVESSLFGYVFTRATSNILLPIIVVVQLIIASYIILLLDEMIQKGWGLGSGVSLFIM 181
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/41 (26%), Positives = 26/41 (63%) Frame = -3 Query: 205 FTSLQIDQYFVTYTFIWLYTFLVSSTNSMLPVLIYLLAICM 83 +TSL ++ F + F++ L++ T+S++ +LI ++C+ Sbjct: 548 YTSLWFNKIFYMFGFLFFSFLLLTLTSSLVTILITYHSLCL 588
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/42 (26%), Positives = 24/42 (57%) Frame = -1 Query: 330 RQYSGSNSLQSEHRNSEGTQLQSEHRNPKEHNYNLHIGRNTT 205 R+ S N + +H+N + Q Q + ++ + H+ + H G++ T Sbjct: 130 RRNSHHNQSEGQHQNVQHDQSQRQDKDSERHDTDPHCGQSET 171
>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Frame = +2 Query: 251 FRCSDCNCVPSEFRC---SDCNELLPEYCLQSTLQTIRA 358 FRCS C+P + C +DC + E + T + I + Sbjct: 1011 FRCSSGRCIPGHWACDGDNDCGDFSDEAQINCTKEEIHS 1049 Score = 27.3 bits (59), Expect = 9.3 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +2 Query: 251 FRCSDCNCVPSEFRCSDCNE 310 F+C + NC+P +RC N+ Sbjct: 3481 FQCKNNNCIPDHWRCDSQND 3500 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Frame = +2 Query: 224 CRL*LCS-FGFRCSDCNCVPSEFRCS---DCNELLPE 322 C++ C+ FRC+D C+P RC+ DC + E Sbjct: 2586 CKVSTCATVEFRCADGTCIPRSARCNQNIDCADASDE 2622
>SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting protein-related| receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2213 Score = 27.3 bits (59), Expect = 9.3 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 3/25 (12%) Frame = +2 Query: 245 FGFRCSDCNCVPSEFRC---SDCNE 310 F FRC + +C+P+ ++C +DC + Sbjct: 1371 FQFRCDNGHCIPNRWKCDRENDCGD 1395
>MT2_CALSI (P55950) Metallothionein-2B (MT-2B) (Metallothionein-IIB) (MT-IIB)| [Contains: Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)] Length = 58 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/35 (31%), Positives = 15/35 (42%) Frame = +2 Query: 224 CRL*LCSFGFRCSDCNCVPSEFRCSDCNELLPEYC 328 C+ C G +C C C P + S+C E C Sbjct: 12 CKEGECKTGCKCKSCRCPPCDKCSSECKCTSKEEC 46
>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein 2| precursor (Megalin) (Glycoprotein 330) (gp330) Length = 4655 Score = 27.3 bits (59), Expect = 9.3 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 3/23 (13%) Frame = +2 Query: 251 FRCSDCNCVPSEFRC---SDCNE 310 FRC +C+P+++RC DC++ Sbjct: 33 FRCGSGHCIPADWRCDGTKDCSD 55
>MUTS_BACSU (P49849) DNA mismatch repair protein mutS| Length = 858 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = -3 Query: 235 LQSAHRKEHNFTSLQIDQYFVTYTFIWLYTFL----VSSTNSMLPVLIYLLAICM-IDLY 71 ++ EH ++ +T TF+ LYT+L S + + PV +Y L M IDLY Sbjct: 196 IEDGETDEHVTIIEHLNNEDITKTFLRLYTYLKRTQKRSLDHLQPVQVYELEEAMKIDLY 255 Query: 70 TR 65 ++ Sbjct: 256 SK 257
>SORL_HUMAN (Q92673) Sortilin-related receptor precursor (Sorting protein-related| receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2214 Score = 27.3 bits (59), Expect = 9.3 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 3/25 (12%) Frame = +2 Query: 245 FGFRCSDCNCVPSEFRC---SDCNE 310 F FRC + +C+P+ ++C +DC + Sbjct: 1372 FQFRCENGHCIPNRWKCDRENDCGD 1396
>AHM6_ARATH (Q9SZC9) Putative copper-transporting ATPase PAA1 (EC 3.6.3.4)| Length = 949 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/73 (26%), Positives = 34/73 (46%) Frame = +3 Query: 111 TGNMLLVLLTRKVYNQIKVYVTKY*SICRLVKLCSFRCADCNCVPSDSDVQIVIVFLPSS 290 TGN LL L ++ NQ VY+ ++ +++ D V + Q + V++ S Sbjct: 701 TGNSLLALEEHEINNQSVVYIGVDNTLAAVIRFEDKVREDAAQVVENLTRQGIDVYMLSG 760 Query: 291 DVQIVMNYFLNIV 329 D + NY ++V Sbjct: 761 DKRNAANYVASVV 773 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,896,620 Number of Sequences: 219361 Number of extensions: 899104 Number of successful extensions: 2653 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2366 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2650 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
