Clone Name | rbastl25b08 |
---|---|
Clone Library Name | barley_pub |
>gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, complete sequence Length = 191237 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 64 cacaccaaaaacaaactgatag 85 |||||||||||||||||||||| Sbjct: 2226 cacaccaaaaacaaactgatag 2247
>gb|AC004527.2|AC004527 Homo sapiens chromosome 21, Neurofibromatosis 1 (NF1) related locus, complete sequence Length = 131971 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 cacaccaaaaacaaactgatag 85 |||||||||||||||||||||| Sbjct: 94121 cacaccaaaaacaaactgatag 94100
>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105 Length = 340000 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 cacaccaaaaacaaactgatag 85 |||||||||||||||||||||| Sbjct: 17742 cacaccaaaaacaaactgatag 17721
>gb|AY898799.1| Homo sapiens NF1-ch21 pseudogene, complete sequence Length = 10837 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 cacaccaaaaacaaactgatag 85 |||||||||||||||||||||| Sbjct: 2583 cacaccaaaaacaaactgatag 2562
>gb|AY898798.1| Homo sapiens NF1-ch18 pseudogene, complete sequence Length = 10834 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 cacaccaaaaacaaactgatag 85 |||||||||||||||||||||| Sbjct: 2577 cacaccaaaaacaaactgatag 2556
>dbj|AP001634.1| Homo sapiens genomic DNA, chromosome 21q11.1 clone:B585O4, D21S290-LL56 region, complete sequence Length = 71829 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 cacaccaaaaacaaactgatag 85 |||||||||||||||||||||| Sbjct: 33976 cacaccaaaaacaaactgatag 33955
>dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681B3, complete sequence Length = 182424 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 64 cacaccaaaaacaaactgatag 85 |||||||||||||||||||||| Sbjct: 97775 cacaccaaaaacaaactgatag 97796
>ref|XM_450983.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3192 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 atcaggctgctcgtctgatcc 410 ||||||||||||||||||||| Sbjct: 2713 atcaggctgctcgtctgatcc 2693
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 atcaggctgctcgtctgatcc 410 ||||||||||||||||||||| Sbjct: 17965479 atcaggctgctcgtctgatcc 17965459
>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1509_C06 Length = 113436 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 atcaggctgctcgtctgatcc 410 ||||||||||||||||||||| Sbjct: 17133 atcaggctgctcgtctgatcc 17113
>dbj|AK073815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065D05, full insert sequence Length = 3191 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 atcaggctgctcgtctgatcc 410 ||||||||||||||||||||| Sbjct: 2712 atcaggctgctcgtctgatcc 2692
>dbj|AK062110.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B08, full insert sequence Length = 1884 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 atcaggctgctcgtctgatcc 410 ||||||||||||||||||||| Sbjct: 1403 atcaggctgctcgtctgatcc 1383
>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence Length = 195273 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 caactctcccactatagcaa 213 |||||||||||||||||||| Sbjct: 84114 caactctcccactatagcaa 84095
>gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosome y, complete sequence Length = 167384 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 caactctcccactatagcaa 213 |||||||||||||||||||| Sbjct: 104096 caactctcccactatagcaa 104115
>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence Length = 179668 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 aactctcccactatagcaaccatc 218 |||||||||| ||||||||||||| Sbjct: 144936 aactctcccagtatagcaaccatc 144959
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 aactctcccactatagcaaccatc 218 |||||||||| ||||||||||||| Sbjct: 198796 aactctcccagtatagcaaccatc 198773
>emb|AL589908.4| Human DNA sequence from clone RP11-258M3 on chromosome 6, complete sequence Length = 13135 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tgccaacatcacaccaaaaa 74 |||||||||||||||||||| Sbjct: 2445 tgccaacatcacaccaaaaa 2464
>emb|AL121919.20|HSJ492J12 Human DNA sequence from clone RP3-492J12 on chromosome 20 Contains the C20orf174 gene for chromosome 20 open reading frame 174 and a CpG island, complete sequence Length = 129942 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 acaggaagaaccaaggaatg 189 |||||||||||||||||||| Sbjct: 95346 acaggaagaaccaaggaatg 95327
>gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence Length = 193986 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ggcaaaggaataggatagaa 164 |||||||||||||||||||| Sbjct: 95592 ggcaaaggaataggatagaa 95611
>gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, complete sequence Length = 174158 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ggcaaaggaataggatagaa 164 |||||||||||||||||||| Sbjct: 72880 ggcaaaggaataggatagaa 72861
>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence Length = 195110 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 atgcatcatcataaccagac 266 |||||||||||||||||||| Sbjct: 143504 atgcatcatcataaccagac 143485
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tcatggcaaaggaataggat 160 |||||||||||||||||||| Sbjct: 1782058 tcatggcaaaggaataggat 1782077
>gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, complete sequence Length = 182151 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 atgcatcatcataaccagac 266 |||||||||||||||||||| Sbjct: 175085 atgcatcatcataaccagac 175104
>gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, complete sequence Length = 185463 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 atgcatcatcataaccagac 266 |||||||||||||||||||| Sbjct: 149691 atgcatcatcataaccagac 149710
>gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosome 16, complete sequence Length = 180876 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 agaaccaaggaatggcaaca 195 |||||||||||||||||||| Sbjct: 66984 agaaccaaggaatggcaaca 66965
>emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chromosome X, complete sequence Length = 137502 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 caactctcccactatagcaa 213 |||||||||||||||||||| Sbjct: 24102 caactctcccactatagcaa 24083
>gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, complete sequence Length = 203431 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 caactctcccactatagcaa 213 |||||||||||||||||||| Sbjct: 59775 caactctcccactatagcaa 59794
>emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, complete sequence Length = 192649 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaacaaattagaattctcc 20 |||||||||||||||||||| Sbjct: 111675 aaaacaaattagaattctcc 111694
>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence Length = 140942 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gacatgcttcctcgcatggt 288 |||||||||||||||||||| Sbjct: 62021 gacatgcttcctcgcatggt 62040
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ggcaaaggaataggatagaa 164 |||||||||||||||||||| Sbjct: 928595 ggcaaaggaataggatagaa 928614
>emb|AL772387.13| Mouse DNA sequence from clone RP23-133B16 on chromosome 2, complete sequence Length = 195412 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 caactctcccactatagcaa 213 |||||||||||||||||||| Sbjct: 19584 caactctcccactatagcaa 19603 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,219,120 Number of Sequences: 3902068 Number of extensions: 3219120 Number of successful extensions: 59952 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59884 Number of HSP's gapped (non-prelim): 68 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)