ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disint... 32 1.0
2FRZG_MYXXA (P31758) Protein-glutamate methylesterase frzG (EC 3.... 30 2.3
3PRGR_CANFA (Q9GLW0) Progesterone receptor (PR) 30 2.9
4CD008_MOUSE (Q8CGI1) Protein C4orf008 homolog (Fragment) 30 2.9
5SYP_CHLPN (Q9Z851) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline... 30 3.8
6MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II)... 30 3.8
7GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC... 29 6.6
8FIXC_RHISN (Q53208) Protein fixC 28 8.6

>ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 19)
           (ADAM-TS 19) (ADAM-TS19)
          Length = 1207

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query: 243 CSAPTILLTTLVELHASRD*AIRSPSSEACAAGFSSKTRNVCPGPSSPV-----PWK-YD 404
           C A      T    H + + ++ SP S  C+AG SS+ R  CPG  S       P K Y 
Sbjct: 620 CKAGECTSRTSAPEHLAGEWSLWSPCSRTCSAGISSRERK-CPGLDSEARDCNGPRKQYR 678

Query: 405 SKISKPCSSGL 437
              + PC +GL
Sbjct: 679 ICENPPCPAGL 689



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>FRZG_MYXXA (P31758) Protein-glutamate methylesterase frzG (EC 3.1.1.61)|
          Length = 334

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -3

Query: 385 GDEGPGQTFRVLEEK---PAAHASELGDRIAQSLEAWSSTSVVRRIVGAEHEVL 233
           G +   Q  R++      P A+   + D   + L  W S     R++ AEH+VL
Sbjct: 159 GPKAVAQVLRMIPRAFPAPIAYCQHISDGFTEGLAHWLSNETALRVLEAEHDVL 212



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>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)|
          Length = 939

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 309 RSPSSEACAAGFSSKTRNVCPGPSSPVPWKYDSKISKPCSS 431
           R P+  A AAG +       PG ++PVP K DS++  P  S
Sbjct: 252 RPPAGPAAAAGAAPAAPGTAPGGTAPVP-KEDSRLPAPKGS 291



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>CD008_MOUSE (Q8CGI1) Protein C4orf008 homolog (Fragment)|
          Length = 944

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 315 PSSEACAAGFSSKTRNVCPGPSSPVPWKYDSKISKPCS 428
           P +   A GF    ++ CP P +P P   D  IS P S
Sbjct: 704 PKTATTAPGFVDTRKSFCPTPVAPPPSTTDGSISAPPS 741



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>SYP_CHLPN (Q9Z851) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 568

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -3

Query: 454 WLSDQMSPEEQGLDILLSYFQGTGDEGPGQTFRVLEEKPAAHASELGDRIAQSLE 290
           W  D + P+    D LL+    T  E PG  +R+ +    AH   LG R   S E
Sbjct: 374 WDRDLLPPQYG--DFLLAEEGDTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFE 426



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>MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)|
           [Contains: Metallothionein-2' (MT-2')
           (Metallothionein-II') (MT-II')]
          Length = 51

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 116 SCCGVPLYICCNSITEWCCTRAVRCLTC 33
           +CC  P   C NS +  C  +  +C TC
Sbjct: 22  NCCAKPACACTNSASNECSCQTCKCQTC 49



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>GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC cell-derived|
           growth factor) (PCDGF) [Contains: Acrogranin;
           Granulin-1; Granulin-2; Granulin-3; Granulin-4;
           Granulin-5; Granulin-6; Granulin-7]
          Length = 589

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 119 YSCCGVPLYICCNSITEWCCTRAVRCLTCFY 27
           + CC +P  +CC S  + CC +   CL   Y
Sbjct: 384 WGCCPIPEAVCC-SDNQHCCPQGFTCLAQGY 413



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>FIXC_RHISN (Q53208) Protein fixC|
          Length = 435

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 136 QNFINSSATPKIEKPILT*AALV*SR 213
           QNF+    TPKIEK   T AAL+ +R
Sbjct: 393 QNFVRVDGTPKIEKERATTAALIKAR 418


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,847,728
Number of Sequences: 219361
Number of extensions: 1127877
Number of successful extensions: 3326
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3324
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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