>PACS1_HUMAN (Q6VY07) Phosphofurin acidic cluster sorting protein 1 (PACS-1)|
          Length = 963

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 22/84 (26%), Positives = 33/84 (39%)
 Frame = +2

Query: 98  SSTTGIGSYRVVHGPPPLRRTQGKAPRVWPPRASKYPAYCYGTGTVVTDLSSSGLHQGAL 277
           S   G G  +    PPP ++ Q    +  PP+ ++  +    T       SSS       
Sbjct: 18  SGQRGSGVAQSPQQPPPQQQQQQPPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMA 77

Query: 278 LTVVEQDSLWPPQGRGDARLPSPV 349
           + V    +  PP G G  R P+PV
Sbjct: 78  VAVASGSA--PPGGPGPGRTPAPV 99

>PACS1_RAT (O88588) Phosphofurin acidic cluster sorting protein 1 (PACS-1)|
          Length = 961

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = +2

Query: 98  SSTTGIGSYRVVHGPPPLRRTQGKAPRVWPPRASKYPAYCYGTGTVVTDLSSSGLHQGAL 277
           SS  G G  +     PP + +Q + P   PP+ ++  +    T       SSS       
Sbjct: 18  SSQRGSGVAQSPQQQPPQQPSQPQQPT--PPKLAQATSSSSSTSAAAASSSSSSTSTSMA 75

Query: 278 LTVVEQDSLWPPQGRGDARLPSPV 349
           + V    +  PP G G  R P+PV
Sbjct: 76  VAVASGSA--PPGGPGPGRTPAPV 97

>Y439_RICPR (Q9ZDA3) Hypothetical protein RP439|
          Length = 391

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
 Frame = -2

Query: 312 GGHR----------ESCSTTVSRAPWCKPEEDKSVTTVPVP*QYAGY 202
           GGHR          E CS++V +A +   E+ KS+TT  +   Y+ Y
Sbjct: 211 GGHRTFEEQLVFGPEDCSSSVGKATYLSNEQIKSITTTQMKENYSKY 257

>LRRK1_MOUSE (Q3UHC2) Leucine-rich repeat serine/threonine-protein kinase 1 (EC|
            2.7.11.1)
          Length = 2014

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -2

Query: 366  FLLAARTGDGSRAS-PLPCGGHRESCST----TVSRAPWCKPEEDKSVTTVPV 223
            FL+ A   DG  A  P+  G  +ESCS     T +R+ +C P+ED      PV
Sbjct: 1641 FLVLAGLADGLVAVFPVARGTPKESCSYLCSHTANRSKFCIPDEDARQNPYPV 1693

>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 1)
          Length = 3684

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 72   ELDYQGTHCNTSVTSK*AGSPVIH 1
            E+D+     NT  TS  AGSPVIH
Sbjct: 3563 EIDFDDLKANTEYTSYTAGSPVIH 3586

>ERBB_ALV (P00534) Tyrosine-protein kinase transforming protein erbB (EC|
           2.7.10.1)
          Length = 634

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 279 SPSSSRTPYXXXXXXXXXXXXXXCVQRGGREEPSR 383
           SPS+SRTP               C+ R G+  P R
Sbjct: 446 SPSTSRTPLLSSLSATSNNSATNCIDRNGQGHPVR 480

>CYB_DICDI (Q37311) Cytochrome b|
          Length = 389

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 45  YSGYPDNLVLPPSNVLMTHLQPE 113
           Y G+PDN ++  SNV   H+ PE
Sbjct: 250 YLGHPDNYLMADSNVTPAHIVPE 272

>ERBB_AVIER (P00535) Tyrosine-protein kinase transforming protein erbB (EC|
           2.7.10.1)
          Length = 604

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 279 SPSSSRTPYXXXXXXXXXXXXXXCVQRGGREEPSR 383
           SPS+SRTP               C+ R G+  P R
Sbjct: 446 SPSTSRTPLLSSLSATSNNSATNCIDRNGQGHPVR 480

>GCSP_ERWCT (Q6D974) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 957

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +2

Query: 116 GSYRVVHGPPPLRRTQGKAPRVWPPRASKYPAYCYGTGTVVTDLSSSGLHQGALL 280
           G Y V HGP  L+R  G+  R                   +TD+ ++GL QG LL
Sbjct: 346 GMYAVFHGPEGLKRIAGRIHR-------------------LTDILAAGLTQGGLL 381

>IF2_PHOPR (Q6LUJ2) Translation initiation factor IF-2|
          Length = 899

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 60  DNLVLPPSNVLMTHLQPELGHIAWCTAHPRCDVPREKHLVFGLPGQANIRRIVTVQVRL* 239
           DN+       L++HLQ E G  +      R  + R+ H    + G     + V V+VR  
Sbjct: 35  DNVSQTEKQSLLSHLQKEHGGESTDGTPTRLTLQRKTHSTLSVAGTGGKSKSVQVEVRKK 94

Query: 240 RTY 248
           RT+
Sbjct: 95  RTF 97

>LETM1_RAT (Q5XIN6) Leucine zipper-EF-hand containing transmembrane protein 1,|
           mitochondrial precursor
          Length = 739

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 333 RASPLPCGGHRESCSTTVSRAPWCKPEEDKSVTTVP 226
           ++ PL C   R  C  TV+RA W  P   + V T P
Sbjct: 65  KSEPLSCWTQRPECQGTVARAAW-TPASARLVVTGP 99

>COAT_BPSP (P09673) Coat protein|
          Length = 132

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 165 EKHLVFGLPGQANIRRIVTVQVRL*RTYPPPVCTRELCSPSSSRTPY 305
           EK +   +   +  R+   VQ++L     P  CTR+ C PS +R+ +
Sbjct: 46  EKRVTVSVAQPSRNRKNFKVQIKL---QNPTACTRDACDPSVTRSAF 89

>VA1_BPSP (P09677) Readthrough protein A1 [Contains: Coat protein]|
          Length = 331

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 165 EKHLVFGLPGQANIRRIVTVQVRL*RTYPPPVCTRELCSPSSSRTPY 305
           EK +   +   +  R+   VQ++L     P  CTR+ C PS +R+ +
Sbjct: 46  EKRVTVSVAQPSRNRKNFKVQIKL---QNPTACTRDACDPSVTRSAF 89

>ALYS_BPR1T (Q38135) N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)|
          Length = 270

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 191 WEAKHEVLFPGYVATGVGRAPRDMTQFRL*MSH 93
           W+  + V  PGYVA G G    + + F++ +SH
Sbjct: 63  WDKVYLVGEPGYVAYGAGSPANERSPFQIELSH 95

>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)|
          Length = 1090

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 137 GPPPLRRTQGKAPRVWPPRASKYPAY 214
           GPPP R   G AP+  PPRA+  P++
Sbjct: 215 GPPPSR---GPAPQKTPPRAAPPPSF 237

>GAG_MLVMO (P03332) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 537

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +2

Query: 140 PPPLRRTQG----KAPRVWPPRASKYPAYCYGTGTVVTD--LSSSGLHQGALLTVVEQDS 301
           PPPL  +      + PR  PPR+S YPA     G       LS SG   G L+ ++ +D 
Sbjct: 105 PPPLPPSAPSLPLEPPRSTPPRSSLYPALTPSLGAKPKPQVLSDSG---GPLIDLLTED- 160

Query: 302 LWPPQGRGDARLPS 343
             PP  R     PS
Sbjct: 161 --PPPYRDPRPPPS 172

>TILS_ANAMM (Q5P9R1) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 466

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 32  VTEVLQWVXXXXXXXXVQCTHDSSTTGIGSYRVVHGPPPLRRTQ 163
           + E +QW         + CTH++S     S    H P P   TQ
Sbjct: 352 IAETIQW--DRRFAIKIMCTHNASAAETTSCSAKHAPNPSEETQ 393

>Y177_TREPA (O83207) Hypothetical protein TP0177|
          Length = 436

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 12/40 (30%)
 Frame = -3

Query: 245 SPSQPYLYRNNTPDICLP-----WEAKH-------EVLFP 162
           S  Q  LYRN +PDIC+      W A+H        VLFP
Sbjct: 154 SALQALLYRNISPDICMSTDGSFWAAEHFPPAPTLPVLFP 193

>UPPP_PELCD (Q3A6V2) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 263

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 145 PVATYPGKSTSCLASQGKQISGVLLRYRYGCDGLILLRFAPGSSAHRRR 291
           P  + PG     L   G  ++ VL+ +RY C  L L  F P   AH+ R
Sbjct: 35  PGFSQPGVLFDVLLHAGT-MAAVLVYFRYDCRHLALAYFRPHEEAHQYR 82

>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
            (153 kDa nucleoporin)
          Length = 1468

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = +2

Query: 83   QCTHDSSTTGIGSYRVVHGPPPLRRTQGKAPRVWPPRASKYPAYCYGTGTVVTDLSSSGL 262
            Q ++  S++  G+        PL   Q   P      AS  P + +GTG       SSG 
Sbjct: 1223 QASNPVSSSAFGNSAESSTSQPLLFPQDGKPATTSSTASAAPPFVFGTGASSNSTVSSGF 1282

Query: 263  HQGALLT 283
              GA  T
Sbjct: 1283 TFGATTT 1289

>YRAI_BACSU (O07909) Hypothetical protein yraI|
          Length = 144

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 188 PRASKYPAYCYGTGTVVT 241
           P  ++ P YCY TGT VT
Sbjct: 82  PSGTRIPIYCYKTGTTVT 99

>PACS1_MOUSE (Q8K212) Phosphofurin acidic cluster sorting protein 1 (PACS-1)|
          Length = 961

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 22/84 (26%), Positives = 32/84 (38%)
 Frame = +2

Query: 98  SSTTGIGSYRVVHGPPPLRRTQGKAPRVWPPRASKYPAYCYGTGTVVTDLSSSGLHQGAL 277
           SS  G G  +     P  +  Q + P   PP+ ++  +    T       SSS       
Sbjct: 18  SSQRGSGVAQSPQQQPQQQPPQPQQPT--PPKLAQATSSSSSTSAAAASSSSSSTSTSMA 75

Query: 278 LTVVEQDSLWPPQGRGDARLPSPV 349
           + V    +  PP G G  R P+PV
Sbjct: 76  VAVASGSA--PPGGPGPGRTPAPV 97

>ESR1_ICTPU (Q9YHZ7) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)|
          Length = 617

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +2

Query: 155 RTQGKAPRVWPPRASKYPAYCYGTGTV-VTDLSSSGLHQGALLTVVEQDSLWPPQGRGDA 331
           R  GK PR+W  R S  P     T T   T  +++  H  +  +    D    P G G +
Sbjct: 555 RPLGKVPRIWADRVSSSPTTTATTPTTNTTTTTTTTTHHPSNGSTCPADLPSNPPGPGQS 614

Query: 332 RLPSP 346
             PSP
Sbjct: 615 --PSP 617

>TDH_ERWCT (Q6DAT5) L-threonine 3-dehydrogenase (EC 1.1.1.103)|
          Length = 361

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
 Frame = -2

Query: 327 SPLPCGGHRES---------CSTTVSRAPWCKPEEDKSVTTVPVP*----QYAGYLLALG 187
           +P+P  GH +          C T V    W    ++ S  T+PVP     +Y G ++A+G
Sbjct: 18  APMPELGHNDIMIKIRKSAICGTDVHIYNW----DEWSQKTIPVPMVVGHEYVGEIVAIG 73

Query: 186 GQTRGAFPWVRRNGGGPCTTRY 121
            +  G     R +G G  T  Y
Sbjct: 74  QEVNGFHIGDRVSGEGHITCGY 95

>PRIM_MYCSM (O52200) DNA primase (EC 2.7.7.-)|
          Length = 636

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +2

Query: 140 PPPLRRTQGKAPRVWPPRAS-----KYPAYCYGTGTVVTDLSSSGLHQGALLTVVE 292
           PPP++R     P +WP R +     +YPA        +T  S +    GA+ T +E
Sbjct: 467 PPPVQRPDPTDPTLWPQREALKAGLQYPALAGPVFDTLTVESFTHPGYGAVRTAME 522

>TDH_PHOLL (Q7MY48) L-threonine 3-dehydrogenase (EC 1.1.1.103)|
          Length = 341

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 294 CSTTVSRAPWCKPEEDKSVTTVPVP*----QYAGYLLALGGQTRGAFPWVRRNGGGPCTT 127
           C T V    W    +D S  T+PVP     +Y G ++A+G + +G     R +G G  T 
Sbjct: 38  CGTDVHIYNW----DDWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFKIGDRVSGEGHITC 93

Query: 126 RY 121
            Y
Sbjct: 94  GY 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,791,809
Number of Sequences: 219361
Number of extensions: 1618201
Number of successful extensions: 4019
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4016
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)