ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25b02 |
|---|---|
| Clone Library Name | barley_pub |
>FBLN2_MOUSE (P37889) Fibulin-2 precursor| Length = 1221 Score = 37.0 bits (84), Expect = 0.011 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 121 VRAGGESSGTVLGGAQLPPTHLSLTPWPYGM 213 V+AG E LGG LPP+ + +TPWP + Sbjct: 215 VQAGAEGPPAALGGGNLPPSSIRVTPWPVAL 245
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = +1 Query: 133 GESSGTVLGGAQLPPTHLSLTPWPYGMLDRCRC*LV*SSGARGALTPAATLLSCPSVVPA 312 G ++ TVL G LPP+ +++ P G++ + A G P T+ P PA Sbjct: 525 GPAATTVLQGVTLPPSAVAMLNTPDGLVQPAT-----PAAATGEAAPVLTVQPAPQAPPA 579 Query: 313 L 315 + Sbjct: 580 V 580
>IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Iroquois| homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A) Length = 482 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 179 VGGS*APPNTVPDDSPPARTPMPAGLFIS 93 +GGS A P P SP A+ P P G +S Sbjct: 370 LGGSRASPAPAPSRSPSAQCPFPGGTVLS 398
>ARMX1_PONPY (Q5R4B2) Armadillo repeat-containing X-linked protein 1| Length = 453 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +1 Query: 106 PAGIGVRAGGESSGTVLGGAQLPPTHLSLTPWP 204 P G RAGG +SG G A+ T T WP Sbjct: 154 PTRSGSRAGGRASGKSKGKARSKSTRAPATTWP 186
>ARMX1_HUMAN (Q9P291) Armadillo repeat-containing X-linked protein 1 (Protein| ALEX1) (ARM protein lost in epithelial cancers on chromosome X 1) Length = 453 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +1 Query: 106 PAGIGVRAGGESSGTVLGGAQLPPTHLSLTPWP 204 P G RAGG +SG G A+ T T WP Sbjct: 154 PTRSGSRAGGRASGKSKGKARSKSTRAPATTWP 186
>KPC1_ASPNG (Q00078) Protein kinase C-like (EC 2.7.11.13)| Length = 1096 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = -2 Query: 366 SANRIFHGLSTGKPDLTEGGHYRRTTQQGGSRGQSTPGTRTSNQLAPASIQHAIWPW 196 SA+++ HG + G+PD G + GG + G + APA Q I W Sbjct: 356 SADKMEHGGAPGRPDTAGGAGSAHPSGPGGPGAAPSQGYGDGSAGAPAGNQVMIDSW 412
>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle| protein 1) Length = 285 Score = 28.1 bits (61), Expect = 5.2 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Frame = -1 Query: 304 LQKDNSTGWQPGSEHPWHQNFKPTSTGIYPTCHMAMAS-SSGELEVAEHPLTPCPTTRHP 128 L ++++G QP EH ++G P+ +SGE + EH L+ P+ P Sbjct: 144 LSGEHASGEQPSGEH---------ASGEQPSGEQPSGEHASGEQSLGEHALSEKPSGEQP 194 Query: 127 HGHRCRRACSSLSFLTFCTCRL*NVQDFC 41 G + S+ + L TC N Q C Sbjct: 195 SGAPI-SSISTGTILNCYTCAYMNDQGRC 222
>US10_CHV1 (P30817) Virion protein US10 homolog (Fragment)| Length = 208 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Frame = -2 Query: 291 TQQGGSRGQSTPGTRTS-----------NQLAPASIQHAIWPWRQAQVSW 175 +++ +G + P RT NQ A+ + AIWPWR A +++ Sbjct: 97 SRESSRKGDAPPSRRTGTRIHRELKLAHNQWLRANRESAIWPWRTAAMNF 146
>GCC1_HUMAN (Q96CN9) GRIP and coiled-coil domain-containing protein 1 (Golgi| coiled coil protein 1) Length = 775 Score = 28.1 bits (61), Expect = 5.2 Identities = 25/77 (32%), Positives = 36/77 (46%) Frame = +1 Query: 61 IIYRYKKLGKKEMNRPAGIGVRAGGESSGTVLGGAQLPPTHLSLTPWPYGMLDRCRC*LV 240 ++ YK L K++ A I V + + L G QLP LT +P + DRC Sbjct: 38 VVRAYKSLLKEKEALEASIKVLSVSHEADVGLAGVQLP----GLT-FPDSVDDRCSTHSE 92 Query: 241 *SSGARGALTPAATLLS 291 S+G +L AA+L S Sbjct: 93 DSTGTATSLDTAASLTS 109
>IRX5_MOUSE (Q9JKQ4) Iroquois-class homeodomain protein IRX-5 (Iroquois| homeobox protein 5) (Homeodomain protein IRXB2) Length = 484 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 179 VGGS*APPNTVPDDSPPARTPMPAGLFIS 93 +GGS A P P SP A+ P P G +S Sbjct: 372 LGGSRASPAPAPARSPSAQCPFPGGTVLS 400
>GP124_HUMAN (Q96PE1) Probable G-protein coupled receptor 124 precursor (Tumor| endothelial marker 5) Length = 1331 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +3 Query: 159 GCSATSNSPELDAMAIWHVG*MPVLVGLKFWCQ--GCSDPGCHPVELSFCSARPLSGLVS 332 GC S+ P + A+ H+G + VL+ L + + G + G HPV C+A L L + Sbjct: 721 GCQLRSSQPNVSALHCQHLGNVAVLMELSAFPREVGGAGAGLHPVVYP-CTALLLLCLFA 779 Query: 333 PLIIH 347 +I + Sbjct: 780 TIITY 784
>PRLR_COLLI (Q90374) Prolactin receptor precursor (PRL-R)| Length = 830 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Frame = -1 Query: 343 IINGETRPDRG-----RALQKDNSTGWQPGSEHPWHQNFKPTSTGIYPTCHMAMASSSGE 179 I NGE+ P++ R+ +K+ T W +KP S G +PT + + S GE Sbjct: 225 IPNGESPPEKPTIIKCRSPEKETFTCW-----------WKPGSDGGHPTNYTLLYSKEGE 273 Query: 178 LEVAEHP 158 V E P Sbjct: 274 ERVYECP 280
>ASB2_RAT (Q5U2S6) Ankyrin repeat and SOCS box protein 2 (ASB-2)| Length = 634 Score = 23.5 bits (49), Expect(2) = 6.5 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -1 Query: 292 NSTGWQPGSEHPWHQNFKP 236 + T QPG HPW ++ P Sbjct: 55 SQTNHQPGHIHPWTRSSSP 73 Score = 22.7 bits (47), Expect(2) = 6.5 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -3 Query: 146 PDDSPPARTPMPAGLF 99 P +SPPAR P+ GLF Sbjct: 73 PPESPPARAPL--GLF 86
>GP124_MOUSE (Q91ZV8) Probable G-protein coupled receptor 124 precursor (Tumor| endothelial marker 5) Length = 1329 Score = 27.7 bits (60), Expect = 6.8 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Frame = +3 Query: 123 PCGWRVVGHGVRGCSATSNSPELDAMAIWHVG*MPVLVGLKFWCQ--GCSDPGCHPVELS 296 P GW GC + P + ++ H+G + VL+ L + + G S G HPV Sbjct: 712 PGGW-----SSEGCRLRYSQPNVSSLYCQHLGNVAVLMELNAFPREAGGSGAGLHPVVYP 766 Query: 297 FCSARPLSGLVSPLIIH 347 C+A L L S +I + Sbjct: 767 -CTALLLLCLFSTIITY 782
>ERBB4_HUMAN (Q15303) Receptor tyrosine-protein kinase erbB-4 precursor (EC| 2.7.10.1) (p180erbB4) (Tyrosine kinase-type cell surface receptor HER4) Length = 1308 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/58 (27%), Positives = 24/58 (41%) Frame = -1 Query: 355 NFSWIINGETRPDRGRALQKDNSTGWQPGSEHPWHQNFKPTSTGIYPTCHMAMASSSG 182 N + I+NG D+ + L ++ WQ +PW N ST C S +G Sbjct: 138 NLTEILNGGVYVDQNKFLCYADTIHWQDIVRNPWPSNLTLVSTNGSSGCGRCHKSCTG 195
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -3 Query: 158 PNTVP-DDSPPARTPMPAG 105 P+ +P DD PPAR P PAG Sbjct: 125 PSKLPEDDEPPARPPAPAG 143
>YJDP_ECO57 (Q8X3J8) Hypothetical protein yjdP precursor| Length = 109 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -1 Query: 355 NFSWIINGETRPDRGRALQKDNSTGWQ 275 N IN + PDRGR + GWQ Sbjct: 31 NIQQAINDASNPDRGRDYEDSRDDGWQ 57
>TOP2_DROME (P15348) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1447 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Frame = -1 Query: 283 GWQPGSEHPWHQNF----KPTSTGIYPTCHMAMASSSGELEVAEHPL 155 G +P HPW++NF + S G Y S LE++E P+ Sbjct: 862 GQEPSVMHPWYKNFLGRMEYVSDGRYIQTGNIQILSGNRLEISELPV 908
>MYPC2_CHICK (P16419) Myosin-binding protein C, fast-type (Fast MyBP-C)| (C-protein, skeletal muscle fast-isoform) Length = 1131 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 5/29 (17%) Frame = -3 Query: 164 APP-----NTVPDDSPPARTPMPAGLFIS 93 APP + PDD P TP P GLF+S Sbjct: 25 APPPQEHKDEAPDDVHPPETPDPEGLFLS 53
>Y4192_XANAC (Q8PEZ6) UPF0059 membrane protein XAC4192| Length = 194 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 8/40 (20%) Frame = +3 Query: 147 HGVRGCSATSNSPELDAMAIW--------HVG*MPVLVGL 242 HGV G + T + +DAMA+ H+G + V+VGL Sbjct: 107 HGVLGLATTGFATSIDAMAVGVSLAFLDVHIGVVAVVVGL 146
>NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 717 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = -1 Query: 265 EHPWHQNFKPTSTGIYPTCHMAMASSSGELEVAEHPLTPCPTTRHP 128 EH + + TST PT H A+ ++ +L+ + ++ P+ HP Sbjct: 43 EHYSYVSPSVTSTLPLPTAHSALPAACHDLQTSTPGISAVPSANHP 88
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 103 RPAGIGVRAGGESSGTVLGGAQLPPTHLSLTPWPYG 210 RP G G +G+ LGGA P+ +P P+G Sbjct: 792 RPGSRGPAPGPPPAGSALGGAPPVPSRPGASPDPFG 827
>RINI_PIG (P10775) Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor| 1) Length = 456 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 7/38 (18%) Frame = +3 Query: 237 GLKFWCQGCSDPGCH--PVELSFC-----SARPLSGLV 329 GL+ C+G DP CH ++L +C S PL+ ++ Sbjct: 124 GLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVL 161
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 103 RPAGIGVRAGGESSGTVLGGAQLPPTHLSLTPWPYG 210 RP G G +G+ LGGA P+ +P P+G Sbjct: 792 RPGSRGPAPGPPPAGSALGGAPPVPSRPGASPDPFG 827
>ORAI_DROME (Q9U6B8) Protein orai (dOrai)| Length = 351 Score = 27.3 bits (59), Expect = 8.8 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = -1 Query: 262 HPWHQNFKPTSTGIYPTCHMAMASSSGELEVAEHPLTPCPTTRH---PHGHRCRRACSSL 92 HP H + PT +G +S + + P P P++++ P GH R A SS+ Sbjct: 75 HPQHHSNSPTGSGSNSNNSAGFQRTSISNSLLQFPPPPPPSSQNQAKPRGHH-RTASSSM 133 Query: 91 S 89 S Sbjct: 134 S 134
>SYTL2_MOUSE (Q99N50) Synaptotagmin-like protein 2 (Exophilin-4)| Length = 950 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -1 Query: 319 DRGRALQKDNSTGWQPGSEHPWHQNFKPTSTGIYPTCHMAMASSSGELEVAEH 161 D GR ++ S+G P E P H + PT P C + + +G+ E + H Sbjct: 401 DSGREREQLMSSGSAPRDEIPCHSDILPTG----PQCVESSSVINGQQEKSSH 449
>YHDE_BACSU (O07573) Putative HTH-type transcriptional regulator yhdE| Length = 146 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +1 Query: 34 NICKNLVHSIIYRYKKLGKKEMNRPAGIGVRAGGESSGTVLG 159 +I KN + +IYR +LG E R G G+R G + +G Sbjct: 36 SISKNHLMKVIYRLGQLGYVETIRGRGGGIRLGMDPEDINIG 77
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 103 RPAGIGVRAGGESSGTVLGGAQLPPTHLSLTPWPYG 210 RP G G +G+ LGGA P+ +P P+G Sbjct: 792 RPGSRGPAPGPPPAGSALGGAPPVPSRPGASPDPFG 827
>BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-associated transcript| 3) Length = 1154 Score = 27.3 bits (59), Expect = 8.8 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Frame = -3 Query: 332 GNQT*QRAGTTEGQLNRVAAGVRAPLAPELQTN*HRHLS----NMPYGHGVKLR*VGGS* 165 G Q + A G++ R++ GV L L T L +MP G LR V Sbjct: 907 GGQQMELAAVINGRIRRMSRGVNPSLVSWLTTMMGLRLQVVLEHMPVGPDAILRYVRRVG 966 Query: 164 APPNTVPDD 138 PP T+P++ Sbjct: 967 DPPQTLPEE 975 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,340,000 Number of Sequences: 219361 Number of extensions: 1508676 Number of successful extensions: 4854 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4526 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4849 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
