>SEC16_SCHPO (O14029) Multidomain vesicle coat protein|
          Length = 1995

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = -2

Query: 184  PVGGGPCTRTATSRSPGCPTAAPATRPITCPTLRSSPNRP 65
            P  G P   TA S +PG P   P T   T   L S PN P
Sbjct: 1905 PPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAP 1944

>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type|
           coiled-coil domain protein 1)
          Length = 970

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 160 RTATSRSPGCPTAAPATRPITCPTLRSSPNRP 65
           R A SR P  PT  PA++P   P + S+P  P
Sbjct: 561 RNAPSRPPSLPTPRPASQPRKAPVISSTPKLP 592

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 184 PVGGGPCTRTATSRSPGCPTAAPATRPITCPTLRSSPNRPRP 59
           P   GP  +   S SP  P  +PA +P+  P+    P+ P+P
Sbjct: 57  PPAPGPSPKPGPSPSPPKPPPSPAPKPVPPPSPSPKPSPPKP 98

>KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-associated protein|
           2.4) (High sulfur keratin-associated protein 2.4)
          Length = 128

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
 Frame = -2

Query: 175 GGPCTRTATSRSPGC--PTAAPAT--RPITCPTLRSSP-----NRP---RPLYIGFGAYR 32
           GG C +    R P C  P     T  RP+TC    + P      RP    P  +  G  R
Sbjct: 16  GGGCCQPCCCRDPCCCRPVTCQTTVCRPVTCVPRCTRPICEPCRRPVCCDPCSLQEGCCR 75

Query: 31  KCTCCPCFC 5
             TCCP  C
Sbjct: 76  PITCCPSSC 84

>MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 143

 Score = 31.6 bits (70), Expect = 0.61
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -2

Query: 133 CPTAAPATRPITCPTLRSSPNRPRPLYIGFGAYRKCTCCP 14
           CP   P   P TCP     P  P+         +KCTCCP
Sbjct: 54  CPPPCPCPCPATCPCPLKPPCCPQKCSC---CPKKCTCCP 90



 Score = 28.9 bits (63), Expect = 3.9
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -2

Query: 145 RSPGCPTAAPATRPITCPTLRSSP-----NRPRPLYIGFGAYRKCTCCPCFC 5
           +SP CP  +P   P  CP     P       P PL       +KC+CCP  C
Sbjct: 36  KSPCCPPKSPCCPPKPCPCPPPCPCPCPATCPCPLKPPC-CPQKCSCCPKKC 86

>PYRG_CLOPE (Q8XIB3) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 535

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 94  PTLRSSPNRPRPLYIGF 44
           P L+S PNRP PL++GF
Sbjct: 511 PELKSRPNRPHPLFVGF 527

>DNAJ_SYNEL (Q8DKR7) Chaperone protein dnaJ|
          Length = 373

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 124 AAPATRPITCPTLRSSPNRPRPLYIGFGAYRKCTCCP 14
           A P TRP+TC T        R     FG++ + T CP
Sbjct: 153 AKPGTRPVTCSTCGGVGQVRRSARTPFGSFTQLTTCP 189

>SIM2_MOUSE (Q61079) Single-minded homolog 2 (SIM transcription factor) (mSIM)|
          Length = 657

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 148 SRSPGCPTAAPATRPI-TCPTLRSSPNRPRPLYIG 47
           S +PG P AA + RP    P   S+P  PRP Y+G
Sbjct: 614 SAAPGAPEAAGSLRPRHPGPVAASAPGAPRPHYLG 648

>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2|
          Length = 306

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 145 RSPGCPTAAPATRPITCPTLRSSPNRPRP 59
           R  G  TA P T+P   P+ R +P RPRP
Sbjct: 242 RQRGAGTAPPGTQPRQRPSPRPTPRRPRP 270

>G3ST3_HUMAN (Q96A11) Galactose-3-O-sulfotransferase 3 (EC 2.8.2.-) (Gal3ST-3)|
           (Galbeta1-3GalNAc 3'-sulfotransferase 3)
           (Beta-galactose-3-O-sulfotransferase 3) (Gal3ST2)
          Length = 431

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 118 PATRPITCPTLRSSPNRPRPLYIGF 44
           P   P++CP LR+SP RP+ + + F
Sbjct: 44  PKLFPLSCPPLRNSPPRPKHMTVAF 68

>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -2

Query: 133 CPTAAPATRPITCPTLRSSPNRPRPLYIGFGAY--RKCTCCP 14
           CP   P   P TCP   + P   +P          +KCTCCP
Sbjct: 53  CPCPTPCPCPATCPAACACPCPMKPCCPTKCTCCPKKCTCCP 94



 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
 Frame = -2

Query: 145 RSPGCPTAAPATR------------PITCPTLRSSPNRPRPLYIGFGAYRKCTCCPCFC 5
           +SP CP  +P               P TCP   + P   +P         KCTCCP  C
Sbjct: 37  KSPCCPPKSPCCTPKVCPCPTPCPCPATCPAACACPCPMKPC-----CPTKCTCCPKKC 90

>JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylation protein 2B|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1B)
           (Nuclear protein 5qNCA)
          Length = 1761

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 175 GGPCTRTATSRSPGCPTAAPATRPITCPTLRSSPNRPRP 59
           GGP      +     PT++  T+PI  PTL SSP   RP
Sbjct: 713 GGPSLSAMGNGRSSSPTSS-LTQPIEMPTLSSSPTEERP 750

>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 protein)|
          Length = 892

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 145 RSPGCPTAAPATRPITCPTLRSSPNRPRP 59
           R PGCP     + PI  P +  SP+ P P
Sbjct: 454 RPPGCPAQQGGSAPIDPPPVHESPHPPLP 482

>DNAJ_ANASP (Q8YUA5) Chaperone protein dnaJ|
          Length = 376

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 124 AAPATRPITCPTLRSSPNRPRPLYIGFGAYRKCTCCP 14
           A P TRP TC T   S    R     FG++ + + CP
Sbjct: 157 AKPGTRPRTCSTCSGSGQVRRVTRTPFGSFTQVSTCP 193

>RPOC_GEOKA (Q5L404) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1199

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  KPMYNGRGLFGLDLKVGHVIGRVAGAAVGQPG 140
           K  Y      G+D++VG  +G +A  ++G+PG
Sbjct: 900 KKCYGRNMATGMDVEVGEAVGIIAAQSIGEPG 931

>TTP_HUMAN (P26651) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36) (TIS11A protein) (TIS11) (Growth
           factor-inducible nuclear protein NUP475) (G0/G1 switch
           regulatory protein 24)
          Length = 326

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 184 PVGGGPCTRTATSRSPGCPTAAPATRPITCPTLR 83
           P G  P + +A S +PG P A     P+ CP+ R
Sbjct: 221 PPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCR 254

>KRA3A_SHEEP (P02443) Keratin, high-sulfur matrix protein, IIIA3A|
          Length = 130

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
 Frame = -2

Query: 175 GGPCTRTATSRSPGCPTAAPATRPITCP-TLRSSPNRP-----------RPLYIGFGAYR 32
           GG C +    R P C     +T+ ++ P T  S   RP            P  +  G  R
Sbjct: 15  GGGCLQPCCYRDPCCCRPVSSTQTVSRPVTFVSRCTRPICEPCRRPVCCDPCSLQEGCCR 74

Query: 31  KCTCCPCFC 5
             TCCP  C
Sbjct: 75  PITCCPTSC 83

>PSA_DICDI (P12729) Prespore-specific cell surface antigen PsA precursor (D19|
           protein)
          Length = 168

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -2

Query: 172 GPCTRTATSRSPGCPTAAPATRPITCPTLRSSPNRPRP 59
           G C  TAT      PT  P   P   PT  ++PN P P
Sbjct: 103 GVCKITATPAPTVTPTVTPTVTPTVTPTPTNTPN-PTP 139

>HXA4_CHICK (P17277) Homeobox protein Hox-A4 (Chox-1.4)|
          Length = 309

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -2

Query: 157 TATSRSPGCPTAAPATRPITCPTLRSSPNRPRPLYIGFGAYRKCTCCP 14
           +A S +PG     P   P   P  +  P   +PL  G    R+C   P
Sbjct: 113 SAGSAAPGPEQPPPGASPPPPPPAKGHPGPAQPLLPGHALQRRCEAAP 160

>CONN_DROME (Q01819) Connectin precursor|
          Length = 682

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = -1

Query: 182 GRGGPLHPYSDVEITRLSYGGAGDASD--------YMPYFEVKPK*AP 63
           G G P+  ++DV++   S+  +GDA D        Y+  F +KP+  P
Sbjct: 580 GAGSPVVGHNDVDVLMTSHSASGDALDILTTKNAIYIKLFLLKPEMLP 627

>KRA3_CAPHI (P02442) Keratin, high-sulfur matrix protein, IIIA3 (M2.6 protein)|
          Length = 132

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 18/75 (24%)
 Frame = -2

Query: 175 GGPCTRTATSRSPGCPTAAPATRPITCPTLRSSP---------------NRP---RPLYI 50
           GG C +    R P C       RP++C T  S P                RP    P  +
Sbjct: 15  GGGCLQPRYYRDPCC------CRPVSCQTTVSRPVTFVSRCTRPICEPCRRPVCCDPCSL 68

Query: 49  GFGAYRKCTCCPCFC 5
             G  R  TCCP  C
Sbjct: 69  QEGCCRPITCCPTSC 83

>GCR_HUMAN (P04150) Glucocorticoid receptor (GR)|
          Length = 777

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 151 TSRSPGCPTAAPATRPITCPTLRS--SPNRPRPLYIGF 44
           TS +PG  T  PAT P   PTL S      P  LY G+
Sbjct: 511 TSENPGNKTIVPATLPQLTPTLVSLLEVIEPEVLYAGY 548

>ATX7_MOUSE (Q8R4I1) Ataxin-7 (Spinocerebellar ataxia type 7 protein homolog)|
          Length = 867

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 145 RSPGCPTAAPATRPITCPTLRSSPNRPRP 59
           R PGCP     + PI  P  + SP+ P P
Sbjct: 433 RPPGCPAQQGGSTPIDPPPGQESPHPPLP 461

>UL50_HCMVA (P16791) Protein UL50 (HFLF4 protein)|
          Length = 397

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -2

Query: 163 TRTATSRSPGCPTAAPATRPITC-PTLRSSPN-----RPRPLYIGFGAYRKCTCCPC 11
           TRTA  RS    +  P  R  +C PT+ ++       RP P  +  G++R C C  C
Sbjct: 204 TRTAGKRSSRTASPPPPPRHPSCSPTMVAAGGAAAGPRPPPPPMAAGSWRLCRCEAC 260

>ATPG_SPIOL (P05435) ATP synthase gamma chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 364

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 169 PCTRTATSRSPGCPTAAPATRPITCPTLRSSPNR 68
           P T  +T   P   T  P T PI C  LR   +R
Sbjct: 17  PTTTQSTQAPPNNATTLPTTNPIQCANLRELRDR 50

>RIN3_MOUSE (P59729) Ras and Rab interactor 3 (Ras interaction/interference|
           protein 3)
          Length = 980

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 130 PTAAPATRPITCPTLRSSPNRPRP 59
           P   PAT   T PT + SP RP P
Sbjct: 255 PRPTPATPDATSPTSKGSPRRPPP 278

>BCAS1_MOUSE (Q80YN3) Breast carcinoma amplified sequence 1 homolog (Novel|
           amplified in breast cancer 1 homolog)
          Length = 633

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 184 PVGGGPCTRTATSRSPGCPTAAPATRPITCPTLRSSP 74
           PV   P    A  ++PGCP A   T P T P   S P
Sbjct: 144 PVAAAP--GQAPDKTPGCPEAKQQTLPATGPLAPSPP 178

>TTP_RAT (P47973) Tristetraproline (TTP) (Zinc finger protein 36) (Zfp-36)|
           (TIS11A protein) (TIS11)
          Length = 320

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 184 PVGGGPCTRTATSRSPGCPTAAPATRPITCPTLRSS 77
           P G  P + +A S +PG P +     P  CP+ R S
Sbjct: 214 PPGDLPLSPSAFSAAPGTPVSRRDPTPACCPSCRRS 249

>Y330_SHEON (Q8EJX6) UPF0061 protein SO0330|
          Length = 484

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 51  MYNGRGLFGLDLKVGHVIGRVAGAAVGQPGDLDVAVRVQGPPP 179
           +Y+G    G   ++G     + G A+G  G  DVA++  GP P
Sbjct: 67  VYSGHQFGGYTPRLGDGRSIILGEAIGPNGAWDVALKGGGPTP 109

>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 166 CTRTATSRSPGCPTAAPATRPIT-CPTLRSSPNRP 65
           C  TA S S G P++APA  P    P L + P  P
Sbjct: 308 CLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAP 342

>AROA_BRAJA (Q89WF2) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 469

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 151 TSRSPGCPTAAPATRPITCPTLRSSPNRPRPL 56
           T R P C T APA R  +  T+ +  ++PRPL
Sbjct: 4   TGRGP-CGTCAPALRSTSKDTILTHSDQPRPL 34

>R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6781

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 21   HVHFLYAPKPMYNGRGLFGLDLKVGHVIGRVAGAAV----GQPGDLDVAVRVQG 170
            H  F      M N RG  G D++  HV+G   G  V    G    +D  VR +G
Sbjct: 5694 HTLFCTRDFAMRNVRGWLGFDVEGAHVVGSNVGTNVPLQLGFSNGVDFVVRPEG 5747

>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 730

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 175 GGPCTRTATSRSPGCPTAAPATRPITCPTLRSS 77
           G P     +S SPG PT AP+  P   PT  SS
Sbjct: 489 GAPSPGPTSSPSPG-PTGAPSPGPTAAPTAGSS 520

>TTP_SHEEP (Q6S9E0) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36)
          Length = 325

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 184 PVGGGPCTRTATSRSPGCPTAAPATRPITCPTL-RSSPN 71
           P G  P + +A S +PG P +     P  CP+  R++PN
Sbjct: 220 PPGDLPLSPSAFSAAPGTPVSRRDPTPACCPSCRRATPN 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,492,440
Number of Sequences: 219361
Number of extensions: 570942
Number of successful extensions: 2548
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2538
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)