ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475450.1| Oryza sativa (japonica cultivar-group), predic... 62 6e-07
2gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome... 62 6e-07
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 6e-07
4dbj|AK119823.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 6e-07
5dbj|AK105683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 6e-07
6gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 0.58
7ref|NM_184222.2| Oryza sativa (japonica cultivar-group), mRNA 40 2.3
8gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.3
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
11dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 2.3
12dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
13dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
14dbj|AK099326.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.3
15dbj|AK066377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.3
16dbj|AK062277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.3
17ref|XM_464401.1| Oryza sativa (japonica cultivar-group), mRNA 38 9.1
18ref|XM_468599.1| Oryza sativa (japonica cultivar-group), mRNA 38 9.1
19gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
20gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
21gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genom... 38 9.1
22gb|BC006774.1| Mus musculus transmembrane emp24-like trafficking... 38 9.1
23gb|AC090900.3| Drosophila melanogaster clone BACR30C07, complete... 38 9.1
24ref|NM_026775.3| Mus musculus transmembrane emp24-like trafficki... 38 9.1
25gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.1
27gb|AC159244.4| Mus musculus BAC clone RP24-309L4 from chromosome... 38 9.1
28emb|BX901914.13| Zebrafish DNA sequence from clone DKEY-27F18 in... 38 9.1
29emb|AL163301.2|HS21C101 Homo sapiens chromosome 21 segment HS21C101 38 9.1
30emb|AL450389.12| Human DNA sequence from clone RP5-929G5 on chro... 38 9.1
31gb|CP000316.1| Polaromonas sp. JS666, complete genome 38 9.1
32emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 o... 38 9.1
33emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4,... 38 9.1
34emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, ... 38 9.1
35emb|AL022140.1|ATF1N20 Arabidopsis thaliana DNA chromosome 4, BA... 38 9.1
36emb|AL021890.1|ATT8O5 Arabidopsis thaliana DNA chromosome 4, BAC... 38 9.1
37emb|AJ417910.1|SOL417910 Streptomyces olivaceoviridis ngcE gene,... 38 9.1
38emb|AL954253.1| Pan troglodytes chromosome 22 clone PTB-017C02 m... 38 9.1
39emb|BX004862.9| Zebrafish DNA sequence from clone DKEY-200M9 in ... 38 9.1
40emb|AL590150.2| Zebrafish DNA sequence from clone RP71-3C13 in l... 38 9.1
41emb|BX572628.6| Zebrafish DNA sequence from clone CH211-223G7 in... 38 9.1
42ref|NM_057712.3| Drosophila melanogaster igloo CG18285-RA, trans... 38 9.1
43gb|AC135559.4| Oryza sativa chromosome 3 BAC OSJNBa0030J19 genom... 38 9.1
44dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
45dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
46dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
48dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
49gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, comple... 38 9.1
50gb|AY196003.1| Zea mays branched silkless1 mRNA, complete cds 38 9.1
51dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 9.1
52gb|AY178191.1| Zea mays branched silkless1 (bd1) mRNA, complete cds 38 9.1
53dbj|AK191113.1| Mus musculus cDNA, clone:Y1G0104N21, strand:unsp... 38 9.1
54dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
55dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
56dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
57dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
58dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
59dbj|AK110584.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.1
60dbj|AK108100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.1
61dbj|AK071739.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.1
62emb|BX537358.5| Zebrafish DNA sequence from clone DKEY-98L9 in l... 38 9.1
63gb|AE003811.3| Drosophila melanogaster chromosome 2R, section 39... 38 9.1
64gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
65emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa... 38 9.1
66emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa... 38 9.1
67gb|AC004766.1|AC004766 Drosophila melanogaster DNA sequence (P1s... 38 9.1
68emb|AL606529.9| Human DNA sequence from clone RP4-744B2 on chrom... 38 9.1
69dbj|AP001505.1| Homo sapiens genomic DNA, chromosome 21q22.3, cl... 38 9.1 
>ref|XM_475450.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2730

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 78/93 (83%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 73   ttgggcttgacctcaaagtagggcatgtaatcggacgcgtcgccggcgccgccgtaggac 132
            ||||||||||||||||| |||||||||||||| ||||||   ||  ||||| |||| || 
Sbjct: 2726 ttgggcttgacctcaaaatagggcatgtaatccgacgcg---ccatcgccggcgtacgat 2670

                                             
Query: 133  aaccgggtgatctcgacgtcgctgtacgggtgc 165
              |||| ||||||| ||||||||||| ||||||
Sbjct: 2669 ccccggctgatctccacgtcgctgtaggggtgc 2637
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>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
             complete sequence
          Length = 127642

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 78/93 (83%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                         
Query: 73    ttgggcttgacctcaaagtagggcatgtaatcggacgcgtcgccggcgccgccgtaggac 132
             ||||||||||||||||| |||||||||||||| ||||||   ||  ||||| |||| || 
Sbjct: 35270 ttgggcttgacctcaaaatagggcatgtaatccgacgcg---ccatcgccggcgtacgat 35326

                                              
Query: 133   aaccgggtgatctcgacgtcgctgtacgggtgc 165
               |||| ||||||| ||||||||||| ||||||
Sbjct: 35327 ccccggctgatctccacgtcgctgtaggggtgc 35359
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 78/93 (83%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                            
Query: 73       ttgggcttgacctcaaagtagggcatgtaatcggacgcgtcgccggcgccgccgtaggac 132
                ||||||||||||||||| |||||||||||||| ||||||   ||  ||||| |||| || 
Sbjct: 23754449 ttgggcttgacctcaaaatagggcatgtaatccgacgcg---ccatcgccggcgtacgat 23754505

                                                 
Query: 133      aaccgggtgatctcgacgtcgctgtacgggtgc 165
                  |||| ||||||| ||||||||||| ||||||
Sbjct: 23754506 ccccggctgatctccacgtcgctgtaggggtgc 23754538



 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 104     cggacgcgtcgccggcgccg 123
               ||||||||||||||||||||
Sbjct: 1584172 cggacgcgtcgccggcgccg 1584153



 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 108      cgcgtcgccggcgccgccg 126
                |||||||||||||||||||
Sbjct: 25576592 cgcgtcgccggcgccgccg 25576610



 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 113      cgccggcgccgccgtagga 131
                |||||||||||||||||||
Sbjct: 20457305 cgccggcgccgccgtagga 20457323
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>dbj|AK119823.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D06, full
            insert sequence
          Length = 3176

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 78/93 (83%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 73   ttgggcttgacctcaaagtagggcatgtaatcggacgcgtcgccggcgccgccgtaggac 132
            ||||||||||||||||| |||||||||||||| ||||||   ||  ||||| |||| || 
Sbjct: 3024 ttgggcttgacctcaaaatagggcatgtaatccgacgcg---ccatcgccggcgtacgat 2968

                                             
Query: 133  aaccgggtgatctcgacgtcgctgtacgggtgc 165
              |||| ||||||| ||||||||||| ||||||
Sbjct: 2967 ccccggctgatctccacgtcgctgtaggggtgc 2935
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>dbj|AK105683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B07, full
            insert sequence
          Length = 2509

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 78/93 (83%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 73   ttgggcttgacctcaaagtagggcatgtaatcggacgcgtcgccggcgccgccgtaggac 132
            ||||||||||||||||| |||||||||||||| ||||||   ||  ||||| |||| || 
Sbjct: 2349 ttgggcttgacctcaaaatagggcatgtaatccgacgcg---ccatcgccggcgtacgat 2293

                                             
Query: 133  aaccgggtgatctcgacgtcgctgtacgggtgc 165
              |||| ||||||| ||||||||||| ||||||
Sbjct: 2292 ccccggctgatctccacgtcgctgtaggggtgc 2260
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 138    ggtgatctcgacgtcgctgta 158
              |||||||||||||||||||||
Sbjct: 604209 ggtgatctcgacgtcgctgta 604189
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>ref|NM_184222.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2217

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 cgtcgccggcgccgccgtag 129
           ||||||||||||||||||||
Sbjct: 167 cgtcgccggcgccgccgtag 148
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>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0056I11, complete sequence
          Length = 145796

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   cggacgcgtcgccggcgccg 123
             ||||||||||||||||||||
Sbjct: 36332 cggacgcgtcgccggcgccg 36313
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 110      cgtcgccggcgccgccgtag 129
                ||||||||||||||||||||
Sbjct: 10749174 cgtcgccggcgccgccgtag 10749155
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 110     cgtcgccggcgccgccgtag 129
               ||||||||||||||||||||
Sbjct: 1642986 cgtcgccggcgccgccgtag 1643005
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 131     acaaccgggtgatctcgacg 150
               ||||||||||||||||||||
Sbjct: 4401005 acaaccgggtgatctcgacg 4401024
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>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408F06
          Length = 137462

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   cgtcgccggcgccgccgtag 129
             ||||||||||||||||||||
Sbjct: 80217 cgtcgccggcgccgccgtag 80236
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0085I16
          Length = 141701

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   cgtcgccggcgccgccgtag 129
             ||||||||||||||||||||
Sbjct: 85792 cgtcgccggcgccgccgtag 85773
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>dbj|AK099326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033016J24, full
           insert sequence
          Length = 2217

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 cgtcgccggcgccgccgtag 129
           ||||||||||||||||||||
Sbjct: 167 cgtcgccggcgccgccgtag 148
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>dbj|AK066377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065M02, full
           insert sequence
          Length = 2306

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 cgtcgccggcgccgccgtag 129
           ||||||||||||||||||||
Sbjct: 167 cgtcgccggcgccgccgtag 148
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>dbj|AK062277.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B07, full
           insert sequence
          Length = 1241

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 cgtcgccggcgccgccgtag 129
           ||||||||||||||||||||
Sbjct: 887 cgtcgccggcgccgccgtag 868
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>ref|XM_464401.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1319

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 109 gcgtcgccggcgccgccgt 127
           |||||||||||||||||||
Sbjct: 449 gcgtcgccggcgccgccgt 431
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>ref|XM_468599.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 513

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 103 tcggacgcgtcgccggcgccgcc 125
           |||||||||||| ||||||||||
Sbjct: 440 tcggacgcgtcggcggcgccgcc 418
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>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01,
              complete sequence
          Length = 173074

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 113    cgccggcgccgccgtagga 131
              |||||||||||||||||||
Sbjct: 129050 cgccggcgccgccgtagga 129068
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>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
             complete sequence
          Length = 169073

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 108   cgcgtcgccggcgccgccg 126
             |||||||||||||||||||
Sbjct: 92999 cgcgtcgccggcgccgccg 93017
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>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete
             sequence
          Length = 145714

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 103   tcggacgcgtcgccggcgccgcc 125
             |||||||||||| ||||||||||
Sbjct: 54277 tcggacgcgtcggcggcgccgcc 54299
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>gb|BC006774.1| Mus musculus transmembrane emp24-like trafficking protein 10 (yeast),
            mRNA (cDNA clone IMAGE:3588721), complete cds
          Length = 3169

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    ggaaacaaaaacatggaca 19
            |||||||||||||||||||
Sbjct: 2778 ggaaacaaaaacatggaca 2760
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>gb|AC090900.3| Drosophila melanogaster clone BACR30C07, complete sequence
          Length = 186286

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 105    ggacgcgtcgccggcgccg 123
              |||||||||||||||||||
Sbjct: 132766 ggacgcgtcgccggcgccg 132784
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>ref|NM_026775.3| Mus musculus transmembrane emp24-like trafficking protein 10 (yeast)
            (Tmed10), mRNA
          Length = 3345

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    ggaaacaaaaacatggaca 19
            |||||||||||||||||||
Sbjct: 2968 ggaaacaaaaacatggaca 2950
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>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
           OSJNBb0092E21, complete sequence
          Length = 132649

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 113 cgccggcgccgccgtagga 131
           |||||||||||||||||||
Sbjct: 784 cgccggcgccgccgtagga 802
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 103      tcggacgcgtcgccggcgccgcc 125
                |||||||||||| ||||||||||
Sbjct: 16530055 tcggacgcgtcggcggcgccgcc 16530033
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>gb|AC159244.4| Mus musculus BAC clone RP24-309L4 from chromosome 12, complete sequence
          Length = 216500

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     ggaaacaaaaacatggaca 19
             |||||||||||||||||||
Sbjct: 47871 ggaaacaaaaacatggaca 47889
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>emb|BX901914.13| Zebrafish DNA sequence from clone DKEY-27F18 in linkage group 4,
             complete sequence
          Length = 149383

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    gacaacatgtacattttct 34
             |||||||||||||||||||
Sbjct: 15871 gacaacatgtacattttct 15889
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>emb|AL163301.2|HS21C101 Homo sapiens chromosome 21 segment HS21C101
          Length = 340000

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     gaaacaaaaacatggacaa 20
             |||||||||||||||||||
Sbjct: 61295 gaaacaaaaacatggacaa 61313
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>emb|AL450389.12| Human DNA sequence from clone RP5-929G5 on chromosome 1 Contains the
             VANGL1 gene for vang-like 1 (van gogh, Drosophila), the 3'
             end of the CASQ2 gene for calsequestrin 2 (cardiac muscle)
             and one CpG island, complete sequence
          Length = 101623

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     aaacaaaaacatggacaac 21
             |||||||||||||||||||
Sbjct: 88489 aaacaaaaacatggacaac 88471
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 74      tgggcttgacctcaaagta 92
               |||||||||||||||||||
Sbjct: 5003805 tgggcttgacctcaaagta 5003823
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>emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 on chromosome 20q12 Contains a
             novel gene, complete sequence
          Length = 125517

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     caaaaacatggacaacatg 24
             |||||||||||||||||||
Sbjct: 35208 caaaaacatggacaacatg 35190
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>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 110   cgtcgccggcgccgccgta 128
             |||||||||||||||||||
Sbjct: 22092 cgtcgccggcgccgccgta 22074
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>emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 56
          Length = 196247

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    acatgtacattttctatac 38
             |||||||||||||||||||
Sbjct: 60776 acatgtacattttctatac 60794
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>emb|AL022140.1|ATF1N20 Arabidopsis thaliana DNA chromosome 4, BAC clone F1N20 (ESSA project)
          Length = 103270

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   acatgtacattttctatac 38
            |||||||||||||||||||
Sbjct: 6458 acatgtacattttctatac 6476
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>emb|AL021890.1|ATT8O5 Arabidopsis thaliana DNA chromosome 4, BAC clone T8O5 (ESSAII project)
          Length = 83029

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    acatgtacattttctatac 38
             |||||||||||||||||||
Sbjct: 59288 acatgtacattttctatac 59306
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>emb|AJ417910.1|SOL417910 Streptomyces olivaceoviridis ngcE gene, ngcF gene, ngcG gene and ngcR
            gene
          Length = 5639

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 104  cggacgcgtcgccggcgccgccg 126
            |||||||| ||||||||||||||
Sbjct: 3169 cggacgcgccgccggcgccgccg 3191
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>emb|AL954253.1| Pan troglodytes chromosome 22 clone PTB-017C02 map 22q22.3, complete
              sequence
          Length = 155818

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      gaaacaaaaacatggacaa 20
              |||||||||||||||||||
Sbjct: 125790 gaaacaaaaacatggacaa 125808
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>emb|BX004862.9| Zebrafish DNA sequence from clone DKEY-200M9 in linkage group 4
             Contains the gene for a novel protein similar to
             vertebrate TAFA protein 5 (TAFA5) and a CpG island,
             complete sequence
          Length = 174359

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    gacaacatgtacattttct 34
             |||||||||||||||||||
Sbjct: 92124 gacaacatgtacattttct 92106
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>emb|AL590150.2| Zebrafish DNA sequence from clone RP71-3C13 in linkage group 4
            Contains the 3' end of the ube2h gene for
            ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast), a
            novel gene, the nrf1 gene for nuclear respiratory factor
            1 and two CpG islands, complete sequence
          Length = 148777

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 16   gacaacatgtacattttct 34
            |||||||||||||||||||
Sbjct: 1541 gacaacatgtacattttct 1559
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>emb|BX572628.6| Zebrafish DNA sequence from clone CH211-223G7 in linkage group 4,
            complete sequence
          Length = 165454

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   atggacaacatgtacattt 31
            |||||||||||||||||||
Sbjct: 2445 atggacaacatgtacattt 2427
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>ref|NM_057712.3| Drosophila melanogaster igloo CG18285-RA, transcript variant A
           (igl), mRNA
          Length = 2514

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 105 ggacgcgtcgccggcgccg 123
           |||||||||||||||||||
Sbjct: 28  ggacgcgtcgccggcgccg 46
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>gb|AC135559.4| Oryza sativa chromosome 3 BAC OSJNBa0030J19 genomic sequence, complete
              sequence
          Length = 133843

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 103    tcggacgcgtcgccggcgccgcc 125
              |||||||||||| ||||||||||
Sbjct: 123988 tcggacgcgtcggcggcgccgcc 124010
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 110      cgtcgccggcgccgccgta 128
                |||||||||||||||||||
Sbjct: 20918869 cgtcgccggcgccgccgta 20918851
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 108     cgcgtcgccggcgccgccg 126
               |||||||||||||||||||
Sbjct: 4642036 cgcgtcgccggcgccgccg 4642018



 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 108     cgcgtcgccggcgccgccg 126
               |||||||||||||||||||
Sbjct: 4570796 cgcgtcgccggcgccgccg 4570814
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 107      acgcgtcgccggcgccgccgtag 129
                |||||||| ||||||||||||||
Sbjct: 27806240 acgcgtcggcggcgccgccgtag 27806218



 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 107      acgcgtcgccggcgccgcc 125
                |||||||||||||||||||
Sbjct: 13544143 acgcgtcgccggcgccgcc 13544125
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 103      tcggacgcgtcgccggcgccgcc 125
                |||||||||||| ||||||||||
Sbjct: 16523689 tcggacgcgtcggcggcgccgcc 16523667
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 109     gcgtcgccggcgccgccgt 127
               |||||||||||||||||||
Sbjct: 4950668 gcgtcgccggcgccgccgt 4950686
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>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence
          Length = 184457

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 56     caacgggcggggcctattt 74
              |||||||||||||||||||
Sbjct: 173565 caacgggcggggcctattt 173583
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>gb|AY196003.1| Zea mays branched silkless1 mRNA, complete cds
          Length = 1518

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 108 cgcgtcgccggcgccgccg 126
           |||||||||||||||||||
Sbjct: 957 cgcgtcgccggcgccgccg 939
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 139     gtgatctcgacgtcgctgt 157
               |||||||||||||||||||
Sbjct: 2711813 gtgatctcgacgtcgctgt 2711795
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>gb|AY178191.1| Zea mays branched silkless1 (bd1) mRNA, complete cds
          Length = 1523

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 108 cgcgtcgccggcgccgccg 126
           |||||||||||||||||||
Sbjct: 962 cgcgtcgccggcgccgccg 944
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>dbj|AK191113.1| Mus musculus cDNA, clone:Y1G0104N21, strand:unspecified
          Length = 247

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 1  ggaaacaaaaacatggaca 19
          |||||||||||||||||||
Sbjct: 89 ggaaacaaaaacatggaca 71
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>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0031B09
          Length = 132729

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 109   gcgtcgccggcgccgccgt 127
             |||||||||||||||||||
Sbjct: 21794 gcgtcgccggcgccgccgt 21812
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>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1145_F01
          Length = 113755

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 109   gcgtcgccggcgccgccgt 127
             |||||||||||||||||||
Sbjct: 95407 gcgtcgccggcgccgccgt 95425
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>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0459H02
          Length = 168230

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 107   acgcgtcgccggcgccgcc 125
             |||||||||||||||||||
Sbjct: 72633 acgcgtcgccggcgccgcc 72615
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>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1153E06
          Length = 174588

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 107    acgcgtcgccggcgccgccgtag 129
              |||||||| ||||||||||||||
Sbjct: 155495 acgcgtcggcggcgccgccgtag 155473
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>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0710B08
          Length = 186991

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 107    acgcgtcgccggcgccgccgtag 129
              |||||||| ||||||||||||||
Sbjct: 108749 acgcgtcggcggcgccgccgtag 108727
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>dbj|AK110584.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E12, full
           insert sequence
          Length = 1293

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 108 cgcgtcgccggcgccgccg 126
           |||||||||||||||||||
Sbjct: 885 cgcgtcgccggcgccgccg 867
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>dbj|AK108100.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-A12, full
           insert sequence
          Length = 1319

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 109 gcgtcgccggcgccgccgt 127
           |||||||||||||||||||
Sbjct: 449 gcgtcgccggcgccgccgt 431
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>dbj|AK071739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108I11, full
           insert sequence
          Length = 1328

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 104 cggacgcgtcgccggcgccgccg 126
           |||||||||||||| ||||||||
Sbjct: 351 cggacgcgtcgccgccgccgccg 329
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>emb|BX537358.5| Zebrafish DNA sequence from clone DKEY-98L9 in linkage group 4, complete
              sequence
          Length = 230105

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     gacaacatgtacattttct 34
              |||||||||||||||||||
Sbjct: 229646 gacaacatgtacattttct 229664
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>gb|AE003811.3| Drosophila melanogaster chromosome 2R, section 39 of 73 of the
            complete sequence
          Length = 255652

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 105  ggacgcgtcgccggcgccg 123
            |||||||||||||||||||
Sbjct: 1911 ggacgcgtcgccggcgccg 1929
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 108     cgcgtcgccggcgccgccg 126
               |||||||||||||||||||
Sbjct: 4642017 cgcgtcgccggcgccgccg 4641999



 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 108     cgcgtcgccggcgccgccg 126
               |||||||||||||||||||
Sbjct: 4570777 cgcgtcgccggcgccgccg 4570795
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>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129155

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   cgcgtcgccggcgccgccg 126
             |||||||||||||||||||
Sbjct: 33982 cgcgtcgccggcgccgccg 33964
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>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 147355

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 108    cgcgtcgccggcgccgccg 126
              |||||||||||||||||||
Sbjct: 110091 cgcgtcgccggcgccgccg 110109
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>gb|AC004766.1|AC004766 Drosophila melanogaster DNA sequence (P1s DS08108 (D156) and DS09214
             (D202)), complete sequence
          Length = 93932

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   ggacgcgtcgccggcgccg 123
             |||||||||||||||||||
Sbjct: 69847 ggacgcgtcgccggcgccg 69829
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>emb|AL606529.9| Human DNA sequence from clone RP4-744B2 on chromosome 1, complete
             sequence
          Length = 66822

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     aaacaaaaacatggacaac 21
             |||||||||||||||||||
Sbjct: 56414 aaacaaaaacatggacaac 56396
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>dbj|AP001505.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:B798C13,
             D21S171-LA161 region, complete sequence
          Length = 70282

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     gaaacaaaaacatggacaa 20
             |||||||||||||||||||
Sbjct: 55368 gaaacaaaaacatggacaa 55386


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,622,935
Number of Sequences: 3902068
Number of extensions: 1622935
Number of successful extensions: 112463
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110893
Number of HSP's gapped (non-prelim): 1570
length of query: 185
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 163
effective length of database: 17,147,199,772
effective search space: 2794993562836
effective search space used: 2794993562836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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