ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANX1_PONPY (Q5REE3) Pannexin-1 31 1.4
2PANX1_HUMAN (Q96RD7) Pannexin-1 31 1.4
3PANX1_RAT (P60570) Pannexin-1 30 2.3
4PANX1_MOUSE (Q9JIP4) Pannexin-1 30 2.3
5EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocy... 30 4.0
6SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor 29 6.8

>PANX1_PONPY (Q5REE3) Pannexin-1|
          Length = 426

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQMG*VAVEA-LLGCRLHCSYF*HQPDQCLLSES 432
           Q+S F PSSF W   A +   CW  + Q   +  E+  L   LH  +        LL  +
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPLWLHKFF-----PYILLLFA 117

Query: 433 VQLYSRPLF 459
           + LY  PLF
Sbjct: 118 ILLYLPPLF 126



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>PANX1_HUMAN (Q96RD7) Pannexin-1|
          Length = 426

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQMG*VAVEA-LLGCRLHCSYF*HQPDQCLLSES 432
           Q+S F PSSF W   A +   CW  + Q   +  E+  L   LH  +        LL  +
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPLWLHKFF-----PYILLLFA 117

Query: 433 VQLYSRPLF 459
           + LY  PLF
Sbjct: 118 ILLYLPPLF 126



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>PANX1_RAT (P60570) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_MOUSE (Q9JIP4) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 339
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocyst complex|
           component Sec5)
          Length = 884

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 323 G*RFCKWVKWPLRLSSAAVFTALIFSTSLINASFQNLFSCTHAR 454
           G +F KW   P  +S + +  +L  + SLI++  +N FS TH +
Sbjct: 495 GDQFAKWPTVPADISRSNLQLSLKTTRSLISSLLENQFSLTHVQ 538



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>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 50   YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 226
            YK+Y  ++ S+ +++       LPE  V  K+ TS+       ++F+ AG GP    +Q 
Sbjct: 1737 YKIYYWEADSQNETEKMKV-LFLPEPVVRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQG 1795

Query: 227  YFHLLAVGFINFLAFN 274
              H  A G  +FLAF+
Sbjct: 1796 RTHQAAPGAPSFLAFS 1811


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,838,192
Number of Sequences: 219361
Number of extensions: 978191
Number of successful extensions: 2636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2634
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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