ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 168 1e-38
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
4dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
5dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
6gb|AY103740.1| Zea mays PCO120652 mRNA sequence 141 2e-30
7gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence 101 2e-18
8gb|AY109245.1| Zea mays PCO147899 mRNA sequence 94 5e-16
9gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
10gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
12dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
13dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
14dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
15dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
17gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomi... 44 0.39
18emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N... 44 0.39
19gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 1... 42 1.5
20gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cance... 42 1.5
21gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence 42 1.5
22gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, co... 42 1.5
23gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, comple... 42 1.5
24gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, co... 42 1.5
25gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, co... 42 1.5
26gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, compl... 40 6.1
27gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
28gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
29gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome... 40 6.1
30ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM033... 40 6.1
31emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in... 40 6.1
32gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating... 40 6.1
33ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 6.1
34emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chr... 40 6.1
35emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 i... 40 6.1
36gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, compl... 40 6.1
37gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, compl... 40 6.1
38ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA 40 6.1
39gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone... 40 6.1
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
41gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete... 40 6.1
42gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, comple... 40 6.1
43gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete ... 40 6.1
44emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chro... 40 6.1
45emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, co... 40 6.1
46dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 6.1
47dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:C... 40 6.1
48emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-8... 40 6.1
49dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 6.1
50emb|AL808032.1|CNS08CA7 BAC 30B15 of library A from Tetraodon ni... 40 6.1 
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  168 bits (85), Expect = 1e-38
 Identities = 107/113 (94%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                        
Query: 340  ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 399
            ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 3111 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 3052

                                                                 
Query: 400  ggtcttgctctttattctgatgtaaccgctgagcttgccatc-aactgcttct 451
            |||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 3051 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 2999
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  168 bits (85), Expect = 1e-38
 Identities = 107/113 (94%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                            
Query: 340      ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 399
                ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 10020837 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 10020896

                                                                     
Query: 400      ggtcttgctctttattctgatgtaaccgctgagcttgccatc-aactgcttct 451
                |||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 10020897 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 10020949
to top
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  168 bits (85), Expect = 1e-38
 Identities = 107/113 (94%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                          
Query: 340    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 399
              ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 101119 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 101178

                                                                   
Query: 400    ggtcttgctctttattctgatgtaaccgctgagcttgccatc-aactgcttct 451
              |||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 101179 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 101231
to top
>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0021A04
          Length = 50487

 Score =  168 bits (85), Expect = 1e-38
 Identities = 107/113 (94%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                         
Query: 340   ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 399
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 48394 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 48453

                                                                  
Query: 400   ggtcttgctctttattctgatgtaaccgctgagcttgccatc-aactgcttct 451
             |||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 48454 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 48506
to top
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  168 bits (85), Expect = 1e-38
 Identities = 107/113 (94%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                          
Query: 340    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 399
              ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 115330 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 115389

                                                                   
Query: 400    ggtcttgctctttattctgatgtaaccgctgagcttgccatc-aactgcttct 451
              |||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 115390 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 115442
to top
>gb|AY103740.1| Zea mays PCO120652 mRNA sequence
          Length = 1013

 Score =  141 bits (71), Expect = 2e-30
 Identities = 95/103 (92%)
 Strand = Plus / Minus

                                                                       
Query: 340 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 399
           ||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct: 631 ttaactgccacccttctgcttgagagtaatcttgtcacctaagctgagtgcaattccctg 572

                                                      
Query: 400 ggtcttgctctttattctgatgtaaccgctgagcttgccatca 442
           |||||||||| |||||| ||||||||| |||||||||||||||
Sbjct: 571 ggtcttgctccttattcggatgtaaccactgagcttgccatca 529
to top
>gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence
          Length = 1032

 Score =  101 bits (51), Expect = 2e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                       
Query: 340 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 399
           ||||||||| || ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 638 ttaactgccacctttctgcttgagagtgatcttgtcccctaagctgagtgcaattccctg 579

                                                  
Query: 400 ggtcttgctctttattctgatgtaaccgctgagcttgcc 438
           |||||||||| ||||||  ||||| || |||||||||||
Sbjct: 578 ggtcttgctccttattcgaatgtagccactgagcttgcc 540
to top
>gb|AY109245.1| Zea mays PCO147899 mRNA sequence
          Length = 751

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                       
Query: 345 tgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtct 404
           ||||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 711 tgcctcccttctgttttagggtgatcttgtctcctaagctgagcgcaattccttgggtct 652

                              
Query: 405 tgctctttattctgatgta 423
           ||||  |||| ||||||||
Sbjct: 651 tgcttcttatcctgatgta 633
to top
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                         
Query: 344   ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 403
             |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 16550 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 16609

                                                   
Query: 404   ttgctctttattctgatgtaaccgctgagcttgccatc 441
             || |||  ||||||||| || || || |||||||||||
Sbjct: 16610 ttactccgtattctgatatagccactcagcttgccatc 16647
to top
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                          
Query: 344    ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 403
              |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 166015 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 166074

                                                    
Query: 404    ttgctctttattctgatgtaaccgctgagcttgccatc 441
              || |||  ||||||||| || || || |||||||||||
Sbjct: 166075 ttactccgtattctgatatagccactcagcttgccatc 166112
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                           
Query: 344     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 403
               |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 3648878 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3648937

                                                     
Query: 404     ttgctctttattctgatgtaaccgctgagcttgccatc 441
               || |||  ||||||||| || || || |||||||||||
Sbjct: 3648938 ttactccgtattctgatatagccactcagcttgccatc 3648975
to top
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
            insert sequence
          Length = 3332

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 344  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 403
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                                                  
Query: 404  ttgctctttattctgatgtaaccgctgagcttgccatc 441
            || |||  ||||||||| || || || |||||||||||
Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatc 2871
to top
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
            insert sequence
          Length = 3332

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 344  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 403
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                                                  
Query: 404  ttgctctttattctgatgtaaccgctgagcttgccatc 441
            || |||  ||||||||| || || || |||||||||||
Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatc 2871
to top
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
            insert sequence
          Length = 3363

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 344  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 403
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2999 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2940

                                                  
Query: 404  ttgctctttattctgatgtaaccgctgagcttgccatc 441
            || |||  ||||||||| || || || |||||||||||
Sbjct: 2939 ttactccgtattctgatatagccactcagcttgccatc 2902
to top
>dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F11, full
            insert sequence
          Length = 1741

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 344  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 403
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 1377 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 1318

                                                  
Query: 404  ttgctctttattctgatgtaaccgctgagcttgccatc 441
            || |||  ||||||||| || || || |||||||||||
Sbjct: 1317 ttactccgtattctgatatagccactcagcttgccatc 1280
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                           
Query: 344     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 403
               |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 3657572 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3657631

                                                     
Query: 404     ttgctctttattctgatgtaaccgctgagcttgccatc 441
               || |||  ||||||||| || || || |||||||||||
Sbjct: 3657632 ttactccgtattctgatatagccactcagcttgccatc 3657669
to top
>gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomic sequence, complete
             sequence
          Length = 91755

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 305   ctacatgacacaattgcaacagattg 330
             |||||||| |||||||||||||||||
Sbjct: 20673 ctacatgagacaattgcaacagattg 20648
to top
>emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N9 on chromosome 6q13-15 Contains
              the SNAP91 gene for synaptosomal-associated protein, 91 kD
              homolog (mouse) (KIAA0656) and a CpG island, complete
              sequence
          Length = 167018

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 231    aatcttttgtacattataaaaa 252
              ||||||||||||||||||||||
Sbjct: 106168 aatcttttgtacattataaaaa 106189
to top
>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the
            complete genome
          Length = 11901

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 94   gttttttgtcaaaaaaggcct 114
            |||||||||||||||||||||
Sbjct: 4932 gttttttgtcaaaaaaggcct 4912
to top
>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51315

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 212   tcttctcatccctctctttaa 232
             |||||||||||||||||||||
Sbjct: 29023 tcttctcatccctctctttaa 29043
to top
>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence
          Length = 39112

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   cgaaatacagtatctcaatcc 55
            |||||||||||||||||||||
Sbjct: 5828 cgaaatacagtatctcaatcc 5808
to top
>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence
          Length = 101116

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   tcttcctcttctcatccctct 226
             |||||||||||||||||||||
Sbjct: 82774 tcttcctcttctcatccctct 82794
to top
>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence
          Length = 169579

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 210   cctcttctcatccctctcttt 230
             |||||||||||||||||||||
Sbjct: 41686 cctcttctcatccctctcttt 41706
to top
>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence
          Length = 170801

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 206  tcttcctcttctcatccctct 226
            |||||||||||||||||||||
Sbjct: 7996 tcttcctcttctcatccctct 8016
to top
>gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, complete sequence
          Length = 204424

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 309   atgacacaattgcaacagatt 329
             |||||||||||||||||||||
Sbjct: 73824 atgacacaattgcaacagatt 73844
to top
>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds
          Length = 987

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 atggaagggagttgggagag 138
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
to top
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09,
              complete sequence
          Length = 167318

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    atcttttgtacattataaaa 251
              ||||||||||||||||||||
Sbjct: 157323 atcttttgtacattataaaa 157304
to top
>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12,
             complete sequence
          Length = 121293

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   atcttttgtacattataaaa 251
             ||||||||||||||||||||
Sbjct: 28118 atcttttgtacattataaaa 28099
to top
>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence
          Length = 209579

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcttcctcttctcatccctc 225
             ||||||||||||||||||||
Sbjct: 64584 tcttcctcttctcatccctc 64565
to top
>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 365  gtaatcttgtctcccaagctgagtgcaattccttgggtcttgct 408
            |||||||||||||||||||| |  || || || |||||||||||
Sbjct: 2918 gtaatcttgtctcccaagctcaaggcgatcccctgggtcttgct 2875
to top
>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5, complete
              sequence
          Length = 135495

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    gtacattataaaaacatctt 258
              ||||||||||||||||||||
Sbjct: 118337 gtacattataaaaacatctt 118318
to top
>gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating gene, mRNA (cDNA
            clone MGC:52826 IMAGE:4884583), complete cds
          Length = 3336

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  ttttgtacattataaaaaca 254
            ||||||||||||||||||||
Sbjct: 3216 ttttgtacattataaaaaca 3235
to top
>ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000048.02.0)
           partial mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 231 aatcttttgtacattataaaaaca 254
           |||||||||||||||| |||||||
Sbjct: 324 aatcttttgtacattagaaaaaca 347
to top
>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains
            the RPL21P2 gene for ribosomal protein L21 pseudogene 2
            and a novel gene, complete sequence
          Length = 72540

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 372  tgtctcccaagctgagtgca 391
            ||||||||||||||||||||
Sbjct: 6689 tgtctcccaagctgagtgca 6670
to top
>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10,
            complete sequence
          Length = 167771

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  atggaagggagttgggagag 138
            ||||||||||||||||||||
Sbjct: 2324 atggaagggagttgggagag 2343
to top
>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence
          Length = 194729

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     tcacatctattcttacacca 91
              ||||||||||||||||||||
Sbjct: 114772 tcacatctattcttacacca 114791
to top
>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence
          Length = 168843

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   cccttctgcttgagggtaat 369
             ||||||||||||||||||||
Sbjct: 29210 cccttctgcttgagggtaat 29229
to top
>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 atggaagggagttgggagag 138
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
to top
>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381
           IMAGE:7410517), complete cds
          Length = 968

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 atggaagggagttgggagag 138
           ||||||||||||||||||||
Sbjct: 81  atggaagggagttgggagag 100
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 232      atcttttgtacattataaaa 251
                ||||||||||||||||||||
Sbjct: 17897369 atcttttgtacattataaaa 17897350
to top
>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence
          Length = 164051

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    tcttcctcttctcatccctc 225
              ||||||||||||||||||||
Sbjct: 129969 tcttcctcttctcatccctc 129950
to top
>gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, complete sequence
          Length = 110512

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    acaaacttcacatctattct 84
             ||||||||||||||||||||
Sbjct: 22462 acaaacttcacatctattct 22481
to top
>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence
          Length = 89352

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   ctcccttctgcttgagggta 367
             ||||||||||||||||||||
Sbjct: 72452 ctcccttctgcttgagggta 72433
to top
>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete
            sequence
          Length = 97756

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  aatcttttgtacattataaa 250
            ||||||||||||||||||||
Sbjct: 6181 aatcttttgtacattataaa 6162
to top
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence
          Length = 240928

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   gtacattataaaaacatctt 258
             ||||||||||||||||||||
Sbjct: 72225 gtacattataaaaacatctt 72206
to top
>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence
          Length = 185588

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    cccttctgcttgagggtaat 369
              ||||||||||||||||||||
Sbjct: 134566 cccttctgcttgagggtaat 134585
to top
>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete
             sequence
          Length = 129610

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   tgtctcccaagctgagtgca 391
             ||||||||||||||||||||
Sbjct: 44905 tgtctcccaagctgagtgca 44886
to top
>emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-896J10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166862

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 236    tttgtacattataaaaacatcttt 259
              ||||||||||||||||||| ||||
Sbjct: 106494 tttgtacattataaaaacaacttt 106517
to top
>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene
           region, section 8/19, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 cccttctgcttgagggtaat 369
           ||||||||||||||||||||
Sbjct: 911 cccttctgcttgagggtaat 892
to top
>emb|AL808032.1|CNS08CA7 BAC 30B15 of library A from Tetraodon nigroviridis
          Length = 109043

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   tcttgctctttattctgatg 421
             ||||||||||||||||||||
Sbjct: 96127 tcttgctctttattctgatg 96108


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,426,278
Number of Sequences: 3902068
Number of extensions: 4426278
Number of successful extensions: 87402
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87212
Number of HSP's gapped (non-prelim): 190
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top