Clone Name | rbastl25a01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_500214.1| Yarrowia lipolytica CLIB122, YALI0A18700g predicted mRNA Length = 2205 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 caaaatgcacaagtcgcaat 79 |||||||||||||||||||| Sbjct: 2025 caaaatgcacaagtcgcaat 2044
>emb|AL450313.9| Human DNA sequence from clone RP13-259N13 on chromosome 10 Contains a novel gene, complete sequence Length = 43981 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 caatcagccaaaacttgtta 21 |||||||||||||||||||| Sbjct: 22852 caatcagccaaaacttgtta 22833
>emb|AJ720890.1| Gallus gallus mRNA for hypothetical protein, clone 29a20 Length = 2451 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 taaaatgtgttaccaaaatg 66 |||||||||||||||||||| Sbjct: 1672 taaaatgtgttaccaaaatg 1653
>ref|NM_001006403.1| Gallus gallus translin-associated factor X (TSNAX), mRNA Length = 2451 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 taaaatgtgttaccaaaatg 66 |||||||||||||||||||| Sbjct: 1672 taaaatgtgttaccaaaatg 1653
>emb|BX930979.2| Gallus gallus finished cDNA, clone ChEST68c19 Length = 2344 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 taaaatgtgttaccaaaatg 66 |||||||||||||||||||| Sbjct: 1650 taaaatgtgttaccaaaatg 1631
>emb|BX930977.2| Gallus gallus finished cDNA, clone ChEST68b2 Length = 2322 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 taaaatgtgttaccaaaatg 66 |||||||||||||||||||| Sbjct: 1632 taaaatgtgttaccaaaatg 1613
>emb|AJ319904.1|YLI319904 Yarrowia lipolytica vps28 gene for vps28 protein Length = 1752 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caaaatgcacaagtcgcaat 79 |||||||||||||||||||| Sbjct: 1526 caaaatgcacaagtcgcaat 1507
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 caaaatgcacaagtcgcaat 79 |||||||||||||||||||| Sbjct: 2008139 caaaatgcacaagtcgcaat 2008158
>emb|AL833771.4| Mouse DNA sequence from clone RP23-228H14 on chromosome 2, complete sequence Length = 189283 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aaacataaaatgtgttacca 61 |||||||||||||||||||| Sbjct: 63293 aaacataaaatgtgttacca 63312
>gb|BT017485.1| Zea mays clone EL01N0412G01.c mRNA sequence Length = 640 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acaatcagccaaaacttgt 19 ||||||||||||||||||| Sbjct: 573 acaatcagccaaaacttgt 555
>gb|AC160864.9| Mus musculus 10 BAC RP23-425N2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190336 Score = 38.2 bits (19), Expect = 3.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 44 acataaaatgtgttaccaaaatgcaca 70 ||||||||||| ||||||||| ||||| Sbjct: 62304 acataaaatgttttaccaaaaagcaca 62330
>gb|AC110803.5| Homo sapiens BAC clone RP11-724G23 from 4, complete sequence Length = 21221 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 gcaaacataaaatgtgtta 58 ||||||||||||||||||| Sbjct: 18272 gcaaacataaaatgtgtta 18254
>gb|AC115970.8| Mus musculus chromosome 10, clone RP24-77I13, complete sequence Length = 170563 Score = 38.2 bits (19), Expect = 3.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 44 acataaaatgtgttaccaaaatgcaca 70 ||||||||||| ||||||||| ||||| Sbjct: 158813 acataaaatgttttaccaaaaagcaca 158839
>emb|CR559944.12| Zebrafish DNA sequence from clone CH211-10D19 in linkage group 13, complete sequence Length = 180933 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 gttaccaaaatgcacaagt 73 ||||||||||||||||||| Sbjct: 78399 gttaccaaaatgcacaagt 78417
>gb|AC157912.4| Mus musculus chromosome 19, clone RP24-241F10, complete sequence Length = 153690 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 ttaagtttctatagtatca 37 ||||||||||||||||||| Sbjct: 43403 ttaagtttctatagtatca 43421
>gb|AC102249.16| Mus musculus chromosome 19, clone RP24-160D21, complete sequence Length = 212190 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 ttaagtttctatagtatca 37 ||||||||||||||||||| Sbjct: 33959 ttaagtttctatagtatca 33941
>emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l20, COMPLETE SEQUENCE Length = 150486 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 gcaaacataaaatgtgtta 58 ||||||||||||||||||| Sbjct: 9375 gcaaacataaaatgtgtta 9393
>emb|AL928909.7| Mouse DNA sequence from clone RP23-320I18 on chromosome 2, complete sequence Length = 187340 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 aagtttctatagtatcacg 39 ||||||||||||||||||| Sbjct: 8265 aagtttctatagtatcacg 8283 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 840,548 Number of Sequences: 3902068 Number of extensions: 840548 Number of successful extensions: 57819 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57788 Number of HSP's gapped (non-prelim): 31 length of query: 84 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 63 effective length of database: 17,151,101,840 effective search space: 1080519415920 effective search space used: 1080519415920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)