ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_500214.1| Yarrowia lipolytica CLIB122, YALI0A18700g predi... 40 0.89
2emb|AL450313.9| Human DNA sequence from clone RP13-259N13 on chr... 40 0.89
3emb|AJ720890.1| Gallus gallus mRNA for hypothetical protein, clo... 40 0.89
4ref|NM_001006403.1| Gallus gallus translin-associated factor X (... 40 0.89
5emb|BX930979.2| Gallus gallus finished cDNA, clone ChEST68c19 40 0.89
6emb|BX930977.2| Gallus gallus finished cDNA, clone ChEST68b2 40 0.89
7emb|AJ319904.1|YLI319904 Yarrowia lipolytica vps28 gene for vps2... 40 0.89
8emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 0.89
9emb|AL833771.4| Mouse DNA sequence from clone RP23-228H14 on chr... 40 0.89
10gb|BT017485.1| Zea mays clone EL01N0412G01.c mRNA sequence 38 3.5
11gb|AC160864.9| Mus musculus 10 BAC RP23-425N2 (Roswell Park Canc... 38 3.5
12gb|AC110803.5| Homo sapiens BAC clone RP11-724G23 from 4, comple... 38 3.5
13gb|AC115970.8| Mus musculus chromosome 10, clone RP24-77I13, com... 38 3.5
14emb|CR559944.12| Zebrafish DNA sequence from clone CH211-10D19 i... 38 3.5
15gb|AC157912.4| Mus musculus chromosome 19, clone RP24-241F10, co... 38 3.5
16gb|AC102249.16| Mus musculus chromosome 19, clone RP24-160D21, c... 38 3.5
17emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l2... 38 3.5
18emb|AL928909.7| Mouse DNA sequence from clone RP23-320I18 on chr... 38 3.5

>ref|XM_500214.1| Yarrowia lipolytica CLIB122, YALI0A18700g predicted mRNA
          Length = 2205

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   caaaatgcacaagtcgcaat 79
            ||||||||||||||||||||
Sbjct: 2025 caaaatgcacaagtcgcaat 2044



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>emb|AL450313.9| Human DNA sequence from clone RP13-259N13 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 43981

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     caatcagccaaaacttgtta 21
             ||||||||||||||||||||
Sbjct: 22852 caatcagccaaaacttgtta 22833



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>emb|AJ720890.1| Gallus gallus mRNA for hypothetical protein, clone 29a20
          Length = 2451

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   taaaatgtgttaccaaaatg 66
            ||||||||||||||||||||
Sbjct: 1672 taaaatgtgttaccaaaatg 1653



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>ref|NM_001006403.1| Gallus gallus translin-associated factor X (TSNAX), mRNA
          Length = 2451

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   taaaatgtgttaccaaaatg 66
            ||||||||||||||||||||
Sbjct: 1672 taaaatgtgttaccaaaatg 1653



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>emb|BX930979.2| Gallus gallus finished cDNA, clone ChEST68c19
          Length = 2344

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   taaaatgtgttaccaaaatg 66
            ||||||||||||||||||||
Sbjct: 1650 taaaatgtgttaccaaaatg 1631



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>emb|BX930977.2| Gallus gallus finished cDNA, clone ChEST68b2
          Length = 2322

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   taaaatgtgttaccaaaatg 66
            ||||||||||||||||||||
Sbjct: 1632 taaaatgtgttaccaaaatg 1613



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>emb|AJ319904.1|YLI319904 Yarrowia lipolytica vps28 gene for vps28 protein
          Length = 1752

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   caaaatgcacaagtcgcaat 79
            ||||||||||||||||||||
Sbjct: 1526 caaaatgcacaagtcgcaat 1507



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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      caaaatgcacaagtcgcaat 79
               ||||||||||||||||||||
Sbjct: 2008139 caaaatgcacaagtcgcaat 2008158



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>emb|AL833771.4| Mouse DNA sequence from clone RP23-228H14 on chromosome 2, complete
             sequence
          Length = 189283

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    aaacataaaatgtgttacca 61
             ||||||||||||||||||||
Sbjct: 63293 aaacataaaatgtgttacca 63312



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>gb|BT017485.1| Zea mays clone EL01N0412G01.c mRNA sequence
          Length = 640

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   acaatcagccaaaacttgt 19
           |||||||||||||||||||
Sbjct: 573 acaatcagccaaaacttgt 555



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>gb|AC160864.9| Mus musculus 10 BAC RP23-425N2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190336

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 44    acataaaatgtgttaccaaaatgcaca 70
             ||||||||||| ||||||||| |||||
Sbjct: 62304 acataaaatgttttaccaaaaagcaca 62330



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>gb|AC110803.5| Homo sapiens BAC clone RP11-724G23 from 4, complete sequence
          Length = 21221

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    gcaaacataaaatgtgtta 58
             |||||||||||||||||||
Sbjct: 18272 gcaaacataaaatgtgtta 18254



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>gb|AC115970.8| Mus musculus chromosome 10, clone RP24-77I13, complete sequence
          Length = 170563

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 44     acataaaatgtgttaccaaaatgcaca 70
              ||||||||||| ||||||||| |||||
Sbjct: 158813 acataaaatgttttaccaaaaagcaca 158839



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>emb|CR559944.12| Zebrafish DNA sequence from clone CH211-10D19 in linkage group 13,
             complete sequence
          Length = 180933

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    gttaccaaaatgcacaagt 73
             |||||||||||||||||||
Sbjct: 78399 gttaccaaaatgcacaagt 78417



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>gb|AC157912.4| Mus musculus chromosome 19, clone RP24-241F10, complete sequence
          Length = 153690

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    ttaagtttctatagtatca 37
             |||||||||||||||||||
Sbjct: 43403 ttaagtttctatagtatca 43421



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>gb|AC102249.16| Mus musculus chromosome 19, clone RP24-160D21, complete sequence
          Length = 212190

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    ttaagtttctatagtatca 37
             |||||||||||||||||||
Sbjct: 33959 ttaagtttctatagtatca 33941



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>emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l20, COMPLETE SEQUENCE
          Length = 150486

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   gcaaacataaaatgtgtta 58
            |||||||||||||||||||
Sbjct: 9375 gcaaacataaaatgtgtta 9393



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>emb|AL928909.7| Mouse DNA sequence from clone RP23-320I18 on chromosome 2, complete
            sequence
          Length = 187340

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   aagtttctatagtatcacg 39
            |||||||||||||||||||
Sbjct: 8265 aagtttctatagtatcacg 8283


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 840,548
Number of Sequences: 3902068
Number of extensions: 840548
Number of successful extensions: 57819
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57788
Number of HSP's gapped (non-prelim): 31
length of query: 84
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 63
effective length of database: 17,151,101,840
effective search space: 1080519415920
effective search space used: 1080519415920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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