Clone Name | rbastl24h11 |
---|---|
Clone Library Name | barley_pub |
>emb|AL357042.11| Human DNA sequence from clone RP11-85O2 on chromosome 10, complete sequence Length = 115348 Score = 40.1 bits (20), Expect = 0.69 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 aagcaccagtgctgacttga 62 |||||||||||||||||||| Sbjct: 13127 aagcaccagtgctgacttga 13108
>emb|AL121938.10|HSDJ167O5 Human DNA sequence from clone RP1-167O5 on chromosome 6q22.1-23.3 Contains the 3' end of the TPD52L1 gene encoding two variants of tumor protein D52-like 1 protein, the gene for CGI-130 protein and a CpG island, complete sequence Length = 156054 Score = 40.1 bits (20), Expect = 0.69 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 gggggaagcccaactgtgactgca 24 |||||||||||||||||| ||||| Sbjct: 66388 gggggaagcccaactgtgtctgca 66411
>gb|AC165262.2| Mus musculus BAC clone RP23-89H5 from chromosome 14, complete sequence Length = 201412 Score = 40.1 bits (20), Expect = 0.69 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 acttgcaaagcaccagtgct 55 |||||||||||||||||||| Sbjct: 94012 acttgcaaagcaccagtgct 94031
>gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete sequence Length = 129121 Score = 40.1 bits (20), Expect = 0.69 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 actgtgactgcattttatta 32 |||||||||||||||||||| Sbjct: 50865 actgtgactgcattttatta 50884
>gb|AC022429.7| Homo sapiens chromosome 10 clone CTD-2374D18, complete sequence Length = 89582 Score = 40.1 bits (20), Expect = 0.69 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 aagcaccagtgctgacttga 62 |||||||||||||||||||| Sbjct: 14963 aagcaccagtgctgacttga 14944
>gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, complete sequence Length = 167116 Score = 40.1 bits (20), Expect = 0.69 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 acttgcaaagcaccagtgct 55 |||||||||||||||||||| Sbjct: 139006 acttgcaaagcaccagtgct 138987
>gb|BC023148.1| Mus musculus RIKEN cDNA 2810429O05 gene, mRNA (cDNA clone MGC:28296 IMAGE:4011571), complete cds Length = 2192 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aagcaccagtgctgacttg 61 ||||||||||||||||||| Sbjct: 1435 aagcaccagtgctgacttg 1453
>ref|NM_134046.3| Mus musculus RIKEN cDNA 2810429O05 gene (2810429O05Rik), mRNA Length = 4344 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aagcaccagtgctgacttg 61 ||||||||||||||||||| Sbjct: 1792 aagcaccagtgctgacttg 1810
>gb|AC124590.4| Mus musculus BAC clone RP23-133P12 from chromosome 6, complete sequence Length = 215946 Score = 38.2 bits (19), Expect = 2.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 21 tgcattttattatatacttgcaaagca 47 ||||||||||| | ||||||||||||| Sbjct: 42796 tgcattttattctctacttgcaaagca 42770
>ref|XM_725750.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02894) partial mRNA Length = 1638 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 tttattatatacttgcaaa 44 ||||||||||||||||||| Sbjct: 572 tttattatatacttgcaaa 554
>emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chromosome 9 Contains a ribosomal protein S16 (RPS16) pseudogene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene and a CpG island, complete sequence Length = 199601 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 gcattttattatatacttg 40 ||||||||||||||||||| Sbjct: 165586 gcattttattatatacttg 165568
>gb|AC010659.5| Drosophila melanogaster 3L BAC RP98-13C22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 162345 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 aactgtgactgcattttat 30 ||||||||||||||||||| Sbjct: 18897 aactgtgactgcattttat 18915
>dbj|AK134266.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930420H18 product:hypothetical protein, full insert sequence Length = 2324 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aagcaccagtgctgacttg 61 ||||||||||||||||||| Sbjct: 1463 aagcaccagtgctgacttg 1481
>gb|AC093546.2| Drosophila melanogaster 3L BAC RP98-8G7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 207761 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 aactgtgactgcattttat 30 ||||||||||||||||||| Sbjct: 202339 aactgtgactgcattttat 202357
>dbj|AK032545.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430590A03 product:unclassifiable, full insert sequence Length = 2397 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aagcaccagtgctgacttg 61 ||||||||||||||||||| Sbjct: 1655 aagcaccagtgctgacttg 1673
>dbj|AK036089.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630033P22 product:hypothetical FAD/NAD(P)-binding domain structure containing protein, full insert sequence Length = 2032 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aagcaccagtgctgacttg 61 ||||||||||||||||||| Sbjct: 1290 aagcaccagtgctgacttg 1308
>dbj|AK029226.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4831430H22 product:weakly similar to HYPOTHETICAL 33.8 KDA PROTEIN [Homo sapiens], full insert sequence Length = 4344 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aagcaccagtgctgacttg 61 ||||||||||||||||||| Sbjct: 1792 aagcaccagtgctgacttg 1810
>gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 map 15, complete sequence Length = 177864 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 accagtgctgacttgacat 65 ||||||||||||||||||| Sbjct: 140903 accagtgctgacttgacat 140921
>gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq23, complete sequence Length = 72291 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 ttttattatatacttgcaa 43 ||||||||||||||||||| Sbjct: 31575 ttttattatatacttgcaa 31557
>emb|CT572999.10| Mouse DNA sequence from clone RP23-6C18 on chromosome 12, complete sequence Length = 176044 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aagcaccagtgctgacttg 61 ||||||||||||||||||| Sbjct: 18089 aagcaccagtgctgacttg 18107
>gb|AE003539.3| Drosophila melanogaster chromosome 3L, section 46 of 83 of the complete sequence Length = 272016 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 aactgtgactgcattttat 30 ||||||||||||||||||| Sbjct: 230273 aactgtgactgcattttat 230291
>gb|AC123677.6| Mus musculus chromosome 15, clone RP23-275M16, complete sequence Length = 149858 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 accagtgctgacttgacat 65 ||||||||||||||||||| Sbjct: 101734 accagtgctgacttgacat 101716
>gb|BC036278.1| Mus musculus cDNA clone IMAGE:4008581 Length = 2192 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aagcaccagtgctgacttg 61 ||||||||||||||||||| Sbjct: 1435 aagcaccagtgctgacttg 1453
>gb|BC034399.1| Mus musculus RIKEN cDNA 2810429O05 gene, mRNA (cDNA clone MGC:36863 IMAGE:4481047), complete cds Length = 2176 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aagcaccagtgctgacttg 61 ||||||||||||||||||| Sbjct: 1450 aagcaccagtgctgacttg 1468
>emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chromosome 4, complete sequence Length = 207430 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 accagtgctgacttgacat 65 ||||||||||||||||||| Sbjct: 170010 accagtgctgacttgacat 170028
>gb|M74322.1|OMMCRYSB2 O.sloanei S-crystallin (SL11) gene, exon 2 Length = 300 Score = 38.2 bits (19), Expect = 2.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 26 tttattatatacttgcaaagcaccagt 52 ||||||||||||| |||||| |||||| Sbjct: 74 tttattatatactagcaaagtaccagt 48 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 816,561 Number of Sequences: 3902068 Number of extensions: 816561 Number of successful extensions: 62379 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62345 Number of HSP's gapped (non-prelim): 34 length of query: 70 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 49 effective length of database: 17,151,101,840 effective search space: 840403990160 effective search space used: 840403990160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)