ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL357042.11| Human DNA sequence from clone RP11-85O2 on chro... 40 0.69
2emb|AL121938.10|HSDJ167O5 Human DNA sequence from clone RP1-167O... 40 0.69
3gb|AC165262.2| Mus musculus BAC clone RP23-89H5 from chromosome ... 40 0.69
4gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete seq... 40 0.69
5gb|AC022429.7| Homo sapiens chromosome 10 clone CTD-2374D18, com... 40 0.69
6gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, compl... 40 0.69
7gb|BC023148.1| Mus musculus RIKEN cDNA 2810429O05 gene, mRNA (cD... 38 2.7
8ref|NM_134046.3| Mus musculus RIKEN cDNA 2810429O05 gene (281042... 38 2.7
9gb|AC124590.4| Mus musculus BAC clone RP23-133P12 from chromosom... 38 2.7
10ref|XM_725750.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 38 2.7
11emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chr... 38 2.7
12gb|AC010659.5| Drosophila melanogaster 3L BAC RP98-13C22 (Roswel... 38 2.7
13dbj|AK134266.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 38 2.7
14gb|AC093546.2| Drosophila melanogaster 3L BAC RP98-8G7 (Roswell ... 38 2.7
15dbj|AK032545.1| Mus musculus adult male olfactory brain cDNA, RI... 38 2.7
16dbj|AK036089.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 38 2.7
17dbj|AK029226.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 38 2.7
18gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 m... 38 2.7
19gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq2... 38 2.7
20emb|CT572999.10| Mouse DNA sequence from clone RP23-6C18 on chro... 38 2.7
21gb|AE003539.3| Drosophila melanogaster chromosome 3L, section 46... 38 2.7
22gb|AC123677.6| Mus musculus chromosome 15, clone RP23-275M16, co... 38 2.7
23gb|BC036278.1| Mus musculus cDNA clone IMAGE:4008581 38 2.7
24gb|BC034399.1| Mus musculus RIKEN cDNA 2810429O05 gene, mRNA (cD... 38 2.7
25emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chr... 38 2.7
26gb|M74322.1|OMMCRYSB2 O.sloanei S-crystallin (SL11) gene, exon 2 38 2.7

>emb|AL357042.11| Human DNA sequence from clone RP11-85O2 on chromosome 10, complete
             sequence
          Length = 115348

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aagcaccagtgctgacttga 62
             ||||||||||||||||||||
Sbjct: 13127 aagcaccagtgctgacttga 13108



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>emb|AL121938.10|HSDJ167O5 Human DNA sequence from clone RP1-167O5 on chromosome 6q22.1-23.3
             Contains the 3' end of the TPD52L1 gene encoding two
             variants of tumor protein D52-like 1 protein, the gene for
             CGI-130 protein and a CpG island, complete sequence
          Length = 156054

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     gggggaagcccaactgtgactgca 24
             |||||||||||||||||| |||||
Sbjct: 66388 gggggaagcccaactgtgtctgca 66411



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>gb|AC165262.2| Mus musculus BAC clone RP23-89H5 from chromosome 14, complete sequence
          Length = 201412

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    acttgcaaagcaccagtgct 55
             ||||||||||||||||||||
Sbjct: 94012 acttgcaaagcaccagtgct 94031



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>gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete sequence
          Length = 129121

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    actgtgactgcattttatta 32
             ||||||||||||||||||||
Sbjct: 50865 actgtgactgcattttatta 50884



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>gb|AC022429.7| Homo sapiens chromosome 10 clone CTD-2374D18, complete sequence
          Length = 89582

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aagcaccagtgctgacttga 62
             ||||||||||||||||||||
Sbjct: 14963 aagcaccagtgctgacttga 14944



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>gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, complete sequence
          Length = 167116

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     acttgcaaagcaccagtgct 55
              ||||||||||||||||||||
Sbjct: 139006 acttgcaaagcaccagtgct 138987



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>gb|BC023148.1| Mus musculus RIKEN cDNA 2810429O05 gene, mRNA (cDNA clone MGC:28296
            IMAGE:4011571), complete cds
          Length = 2192

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   aagcaccagtgctgacttg 61
            |||||||||||||||||||
Sbjct: 1435 aagcaccagtgctgacttg 1453



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>ref|NM_134046.3| Mus musculus RIKEN cDNA 2810429O05 gene (2810429O05Rik), mRNA
          Length = 4344

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   aagcaccagtgctgacttg 61
            |||||||||||||||||||
Sbjct: 1792 aagcaccagtgctgacttg 1810



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>gb|AC124590.4| Mus musculus BAC clone RP23-133P12 from chromosome 6, complete sequence
          Length = 215946

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 21    tgcattttattatatacttgcaaagca 47
             ||||||||||| | |||||||||||||
Sbjct: 42796 tgcattttattctctacttgcaaagca 42770



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>ref|XM_725750.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02894)
           partial mRNA
          Length = 1638

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 26  tttattatatacttgcaaa 44
           |||||||||||||||||||
Sbjct: 572 tttattatatacttgcaaa 554



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>emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chromosome 9 Contains a
              ribosomal protein S16 (RPS16) pseudogene, a peptidylprolyl
              isomerase A (cyclophilin A) (PPIA) pseudogene and a CpG
              island, complete sequence
          Length = 199601

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     gcattttattatatacttg 40
              |||||||||||||||||||
Sbjct: 165586 gcattttattatatacttg 165568



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>gb|AC010659.5| Drosophila melanogaster 3L BAC RP98-13C22 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 162345

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    aactgtgactgcattttat 30
             |||||||||||||||||||
Sbjct: 18897 aactgtgactgcattttat 18915



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>dbj|AK134266.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched
            library, clone:5930420H18 product:hypothetical protein,
            full insert sequence
          Length = 2324

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   aagcaccagtgctgacttg 61
            |||||||||||||||||||
Sbjct: 1463 aagcaccagtgctgacttg 1481



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>gb|AC093546.2| Drosophila melanogaster 3L BAC RP98-8G7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 207761

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     aactgtgactgcattttat 30
              |||||||||||||||||||
Sbjct: 202339 aactgtgactgcattttat 202357



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>dbj|AK032545.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430590A03
            product:unclassifiable, full insert sequence
          Length = 2397

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   aagcaccagtgctgacttg 61
            |||||||||||||||||||
Sbjct: 1655 aagcaccagtgctgacttg 1673



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>dbj|AK036089.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630033P22 product:hypothetical
            FAD/NAD(P)-binding domain structure containing protein,
            full insert sequence
          Length = 2032

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   aagcaccagtgctgacttg 61
            |||||||||||||||||||
Sbjct: 1290 aagcaccagtgctgacttg 1308



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>dbj|AK029226.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4831430H22 product:weakly similar to
            HYPOTHETICAL 33.8 KDA PROTEIN [Homo sapiens], full insert
            sequence
          Length = 4344

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   aagcaccagtgctgacttg 61
            |||||||||||||||||||
Sbjct: 1792 aagcaccagtgctgacttg 1810



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>gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 map 15, complete sequence
          Length = 177864

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     accagtgctgacttgacat 65
              |||||||||||||||||||
Sbjct: 140903 accagtgctgacttgacat 140921



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>gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq23, complete sequence
          Length = 72291

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    ttttattatatacttgcaa 43
             |||||||||||||||||||
Sbjct: 31575 ttttattatatacttgcaa 31557



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>emb|CT572999.10| Mouse DNA sequence from clone RP23-6C18 on chromosome 12, complete
             sequence
          Length = 176044

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    aagcaccagtgctgacttg 61
             |||||||||||||||||||
Sbjct: 18089 aagcaccagtgctgacttg 18107



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>gb|AE003539.3| Drosophila melanogaster chromosome 3L, section 46 of 83 of the complete
              sequence
          Length = 272016

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     aactgtgactgcattttat 30
              |||||||||||||||||||
Sbjct: 230273 aactgtgactgcattttat 230291



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>gb|AC123677.6| Mus musculus chromosome 15, clone RP23-275M16, complete sequence
          Length = 149858

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     accagtgctgacttgacat 65
              |||||||||||||||||||
Sbjct: 101734 accagtgctgacttgacat 101716



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>gb|BC036278.1| Mus musculus cDNA clone IMAGE:4008581
          Length = 2192

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   aagcaccagtgctgacttg 61
            |||||||||||||||||||
Sbjct: 1435 aagcaccagtgctgacttg 1453



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>gb|BC034399.1| Mus musculus RIKEN cDNA 2810429O05 gene, mRNA (cDNA clone MGC:36863
            IMAGE:4481047), complete cds
          Length = 2176

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   aagcaccagtgctgacttg 61
            |||||||||||||||||||
Sbjct: 1450 aagcaccagtgctgacttg 1468



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>emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chromosome 4, complete
              sequence
          Length = 207430

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     accagtgctgacttgacat 65
              |||||||||||||||||||
Sbjct: 170010 accagtgctgacttgacat 170028



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>gb|M74322.1|OMMCRYSB2 O.sloanei S-crystallin (SL11) gene, exon 2
          Length = 300

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                     
Query: 26 tttattatatacttgcaaagcaccagt 52
          ||||||||||||| |||||| ||||||
Sbjct: 74 tttattatatactagcaaagtaccagt 48


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 816,561
Number of Sequences: 3902068
Number of extensions: 816561
Number of successful extensions: 62379
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62345
Number of HSP's gapped (non-prelim): 34
length of query: 70
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 49
effective length of database: 17,151,101,840
effective search space: 840403990160
effective search space used: 840403990160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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