ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl24h06 |
|---|---|
| Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 71.2 bits (173), Expect = 6e-13 Identities = 36/41 (87%), Positives = 36/41 (87%), Gaps = 5/41 (12%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTD-----EKMVMEMGIPNSISI 140 RHGAGMVPYVLLRPSDGDPTD EKMVMEMGIPNSISI Sbjct: 896 RHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 62.8 bits (151), Expect = 2e-10 Identities = 29/36 (80%), Positives = 32/36 (88%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 RHGAG+VPYVLLRP +G+P D K VMEMGIPNSISI Sbjct: 897 RHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 35.8 bits (81), Expect = 0.030 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEK--MVMEMGIPNSISI 140 R+G +PY+LL P+ D T EK + MGIPNSISI Sbjct: 840 RNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 33.1 bits (74), Expect = 0.19 Identities = 20/36 (55%), Positives = 22/36 (61%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 R GAG+VPY LL+ P E V GIPNSISI Sbjct: 866 RCGAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 32.0 bits (71), Expect = 0.43 Identities = 19/36 (52%), Positives = 22/36 (61%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 R GAG+V Y LL+P T E V MG+P SISI Sbjct: 866 RAGAGVVKYELLKP-----TSEHGVTGMGVPYSISI 896
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 30.8 bits (68), Expect = 0.96 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 140 R+G PY+LL P+ D T + GIPNSISI Sbjct: 830 RNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 30.8 bits (68), Expect = 0.96 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 R GAG++PY L++ P + V MGIPNS SI Sbjct: 894 RCGAGILPYQLMK-----PFSDSGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 30.8 bits (68), Expect = 0.96 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 247 RHGAGMVPYVLLRP-SDGDPTDEKMVMEMGIPNSISI 140 R GAG++PY L++P SD T MGIPNS SI Sbjct: 911 RCGAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 R GAG++PY L+ PS G + G+PNS++I Sbjct: 869 RCGAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 29.6 bits (65), Expect = 2.1 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 R GAG++PY LL PS V G+PNSISI Sbjct: 888 RCGAGVLPYELLAPS-----SPPGVTCRGVPNSISI 918
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 29.6 bits (65), Expect = 2.1 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 R+G +PY LL PS E+ + GIPNSISI Sbjct: 823 RYGPAKMPYTLLYPSS-----EEGLTFRGIPNSISI 853
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 28.9 bits (63), Expect = 3.7 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 RHG +PY LL PS ++ + GIPNSISI Sbjct: 831 RHGPVEMPYTLLYPS-----SKEGLTFRGIPNSISI 861
>TNR1B_HUMAN (P20333) Tumor necrosis factor receptor superfamily member 1B| precursor (Tumor necrosis factor receptor 2) (TNF-R2) (Tumor necrosis factor receptor type II) (p75) (p80 TNF-alpha receptor) (CD120b antigen) (Etanercept) [Contains: Tumor necrosi Length = 461 Score = 28.5 bits (62), Expect = 4.8 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -2 Query: 248 PTRRRH---GAVCAAQAVGR*SHGREDGDGDGHPQQHLHLSCLVCVCNSTRRK*ECLQSL 78 PTR + G + R S G D GH Q ++++C+V VC+S+ +C Sbjct: 343 PTRNQPQAPGVEASGAGEARASTGSSDSSPGGHGTQ-VNVTCIVNVCSSSDHSSQCSSQA 401 Query: 77 GPAVG 63 +G Sbjct: 402 SSTMG 406
>UREE_RHOS4 (Q3J156) Urease accessory protein ureE| Length = 182 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -2 Query: 248 PTRRRHGAVCAAQAVGR*SHGREDGDGDGHPQQHLHLS 135 P R GA + +G HG G G HP H+H+S Sbjct: 132 PFRPEGGAYGHGRTLGH-DHGPAQGHGHDHPHVHVHIS 168
>SPI1_PIG (Q6PKU1) Transcription factor PU.1| Length = 270 Score = 28.5 bits (62), Expect = 4.8 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +2 Query: 53 FPLYPPPGQETE--DTLIYA*LS-----YTHTQGSSNGDAVGDAHLHH 175 FPL PPP ++ DT +Y + Y + G S+ D D H HH Sbjct: 10 FPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFHPHH 57
>SPI1_HUMAN (P17947) Transcription factor PU.1 (31 kDa transforming protein)| Length = 270 Score = 28.5 bits (62), Expect = 4.8 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +2 Query: 53 FPLYPPPGQETE--DTLIYA*LS-----YTHTQGSSNGDAVGDAHLHH 175 FPL PPP ++ DT +Y + Y + G S+ D D H HH Sbjct: 10 FPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFHPHH 57
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 140 R+G PY+LL P+ D + GIPNSISI Sbjct: 826 RNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 28.1 bits (61), Expect = 6.2 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 R+G +PY LL PS E+ + GIPNSISI Sbjct: 836 RYGPVKMPYTLLYPSS-----EEGLTCRGIPNSISI 866
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 28.1 bits (61), Expect = 6.2 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = -3 Query: 247 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 140 R G VPY LL P T E+ + GIPNS+SI Sbjct: 829 RSGPVNVPYTLLFP-----TSEEGLTGKGIPNSVSI 859
>Y463_CHRVO (Q7P0V2) UPF0341 protein CV_0463| Length = 258 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = -2 Query: 245 TRRRHGAVCAAQAVGR*SHGREDGDGDGHP 156 T +HGAV A G H RE G G G P Sbjct: 50 TTGKHGAVYAEFVEGAARHRREQGGGRGQP 79
>PO3F3_MOUSE (P31361) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 495 Score = 27.7 bits (60), Expect = 8.2 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +2 Query: 59 LYPPPGQETEDTLIYA*LSYTHTQGSSNGDAVGDAH-LHHHLLVRGITVRRPEQHIRHH 232 LY PG T + + LS G G A G A L H LVRG T E H HH Sbjct: 218 LYSQPGGFTVNGM----LSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHH 272
>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit| 2 (ACDS complex epsilon subunit 2) Length = 170 Score = 27.7 bits (60), Expect = 8.2 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -1 Query: 78 WPGGGYNGNEHQIIIKGHDDIYI 10 WPG NGN II+ GH YI Sbjct: 99 WPGLDGNGNYDTIILLGHKKYYI 121
>PO3F3_HUMAN (P20264) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 500 Score = 27.7 bits (60), Expect = 8.2 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +2 Query: 59 LYPPPGQETEDTLIYA*LSYTHTQGSSNGDAVGDAH-LHHHLLVRGITVRRPEQHIRHH 232 LY PG T + + LS G G A G A L H LVRG T E H HH Sbjct: 221 LYSQPGGFTVNGM----LSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHH 275
>PO3F3_RAT (Q63262) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 497 Score = 27.7 bits (60), Expect = 8.2 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +2 Query: 59 LYPPPGQETEDTLIYA*LSYTHTQGSSNGDAVGDAH-LHHHLLVRGITVRRPEQHIRHH 232 LY PG T + + LS G G A G A L H LVRG T E H HH Sbjct: 220 LYSQPGGFTVNGM----LSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHH 274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,669,676 Number of Sequences: 219361 Number of extensions: 787434 Number of successful extensions: 1911 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1861 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1898 length of database: 80,573,946 effective HSP length: 59 effective length of database: 67,631,647 effective search space used: 1623159528 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
