ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 37 0.014
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 30 1.3
3SPI1_PIG (Q6PKU1) Transcription factor PU.1 28 5.1
4SPI1_HUMAN (P17947) Transcription factor PU.1 (31 kDa transformi... 28 5.1
5ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex e... 28 8.7

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -3

Query: 190 TDEKMVMEMGIPNSISI 140
           TDEKMVMEMGIPNSISI
Sbjct: 920 TDEKMVMEMGIPNSISI 936



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:2)
          Length = 932

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -3

Query: 187 DEKMVMEMGIPNSISI 140
           D K VMEMGIPNSISI
Sbjct: 917 DAKTVMEMGIPNSISI 932



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>SPI1_PIG (Q6PKU1) Transcription factor PU.1|
          Length = 270

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +2

Query: 53  FPLYPPPGQETE--DTLIYA*LS-----YTHTQGSSNGDAVGDAHLHH 175
           FPL PPP ++    DT +Y   +     Y  + G S+ D   D H HH
Sbjct: 10  FPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFHPHH 57



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>SPI1_HUMAN (P17947) Transcription factor PU.1 (31 kDa transforming protein)|
          Length = 270

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +2

Query: 53  FPLYPPPGQETE--DTLIYA*LS-----YTHTQGSSNGDAVGDAHLHH 175
           FPL PPP ++    DT +Y   +     Y  + G S+ D   D H HH
Sbjct: 10  FPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFHPHH 57



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>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit|
           2 (ACDS complex epsilon subunit 2)
          Length = 170

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 78  WPGGGYNGNEHQIIIKGHDDIYI 10
           WPG   NGN   II+ GH   YI
Sbjct: 99  WPGLDGNGNYDTIILLGHKKYYI 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,203,739
Number of Sequences: 219361
Number of extensions: 538110
Number of successful extensions: 1316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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