ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC021037.6| Homo sapiens chromosome 10 clone RP11-44D15, comp... 38 1.1
2gb|AC093677.4| Homo sapiens BAC clone RP11-629B11 from 4, comple... 38 1.1
3emb|AL451086.6| Human DNA sequence from clone RP11-265D20 on chr... 36 4.2
4gb|AC114318.2| Homo sapiens chromosome 5 clone RP11-425E13, comp... 36 4.2
5gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, compl... 36 4.2
6gb|AC069077.7| Homo sapiens chromosome 10 clone RP11-418N10, com... 36 4.2
7gb|AC098873.3| Homo sapiens BAC clone RP11-793H20 from 4, comple... 36 4.2
8gb|AC160056.2| Pan troglodytes BAC clone CH251-490K14 from chrom... 36 4.2

>gb|AC021037.6| Homo sapiens chromosome 10 clone RP11-44D15, complete sequence
          Length = 179918

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     atatagtccctctttctta 31
              |||||||||||||||||||
Sbjct: 152528 atatagtccctctttctta 152546



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>gb|AC093677.4| Homo sapiens BAC clone RP11-629B11 from 4, complete sequence
          Length = 148179

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     ataaatatagtccctcttt 27
             |||||||||||||||||||
Sbjct: 17171 ataaatatagtccctcttt 17189



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>emb|AL451086.6| Human DNA sequence from clone RP11-265D20 on chromosome X, complete
             sequence
          Length = 111040

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 5     tggcataaatatagtccc 22
             ||||||||||||||||||
Sbjct: 9994  tggcataaatatagtccc 10011



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>gb|AC114318.2| Homo sapiens chromosome 5 clone RP11-425E13, complete sequence
          Length = 163593

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 16     tagtccctctttcttact 33
              ||||||||||||||||||
Sbjct: 125745 tagtccctctttcttact 125728



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>gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, complete sequence
          Length = 137632

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    tagtccctctttcttact 33
             ||||||||||||||||||
Sbjct: 32789 tagtccctctttcttact 32772



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>gb|AC069077.7| Homo sapiens chromosome 10 clone RP11-418N10, complete sequence
          Length = 160384

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      ctaatggcataaatatag 18
              ||||||||||||||||||
Sbjct: 116183 ctaatggcataaatatag 116166



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>gb|AC098873.3| Homo sapiens BAC clone RP11-793H20 from 4, complete sequence
          Length = 119147

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    tatagtccctctttctta 31
             ||||||||||||||||||
Sbjct: 61475 tatagtccctctttctta 61458



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>gb|AC160056.2| Pan troglodytes BAC clone CH251-490K14 from chromosome unknown, complete
              sequence
          Length = 180991

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     tatagtccctctttctta 31
              ||||||||||||||||||
Sbjct: 154038 tatagtccctctttctta 154021


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 347,874
Number of Sequences: 3902068
Number of extensions: 347874
Number of successful extensions: 85027
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85010
Number of HSP's gapped (non-prelim): 17
length of query: 39
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 19
effective length of database: 17,155,003,908
effective search space: 325945074252
effective search space used: 325945074252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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