>MATK_FROFL (Q5J309) Maturase K (Intron maturase)|
          Length = 505

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 233 WF*SESIADRLT*SLNILLASLGLSCKMHT*EY*SLKIWQCFIS 102
           WF  E     +      LLAS G S  MH  +Y  +  WQC+ S
Sbjct: 267 WFFKEPFPHYVRYQGKALLASKGTSLLMHKWKYYFIYFWQCYFS 310

>MATK_GOMPU (Q5J306) Maturase K (Intron maturase)|
          Length = 505

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 182 LLASLGLSCKMHT*EY*SLKIWQCFIS 102
           LLAS G S  MH  +Y  +  WQC+ S
Sbjct: 284 LLASKGTSLLMHKWKYYFISFWQCYFS 310

>MATK_GOMHA (Q5J308) Maturase K (Intron maturase)|
          Length = 505

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 182 LLASLGLSCKMHT*EY*SLKIWQCFIS 102
           LLAS G S  MH  +Y  +  WQC+ S
Sbjct: 284 LLASKGTSLLMHKWKYYFISFWQCYFS 310

>MATK_GRABR (Q95EE5) Maturase K (Intron maturase)|
          Length = 510

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 182 LLASLGLSCKMHT*EY*SLKIWQCFIS 102
           +LAS G S  MH  +Y  +  WQC+ S
Sbjct: 289 ILASKGTSLLMHKWKYYLINFWQCYFS 315

>MATK_MAMHA (Q95EC9) Maturase K (Intron maturase)|
          Length = 510

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 182 LLASLGLSCKMHT*EY*SLKIWQCFIS 102
           +LAS G S  MH  +Y  L  WQC  S
Sbjct: 288 ILASKGTSLLMHKWKYYLLNFWQCHFS 314

>JAK3_HUMAN (P52333) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (Janus kinase|
           3) (JAK-3) (Leukocyte janus kinase) (L-JAK)
          Length = 1124

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 138 LSSMHLARQTKASQQNVQALGKTISYRL*LEPSYRGSNNRISLQCGKRI 284
           L+ + LAR  +   Q    L KT+SY+  L PS R     +S    +RI
Sbjct: 165 LAVLDLARMAREQAQRPGELLKTVSYKACLPPSLRDLIQGLSFVTRRRI 213

>VL1_HPV57 (P22162) Major capsid protein L1|
          Length = 510

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
 Frame = +1

Query: 43  LTIVETTRNTS-----------NYR*HSVKSEMKHCQIFKLQY-SQVCILQDRPRLASRM 186
           LT+V+TTR+T+           NY+  + K  ++H + + LQ+  Q+C +   P + + +
Sbjct: 343 LTVVDTTRSTNVSLCATVTTETNYKASNYKEYLRHMEEYDLQFIFQLCKITLTPEIMAYI 402

Query: 187 FRL*VR 204
             +  R
Sbjct: 403 HNMDAR 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,610,164
Number of Sequences: 219361
Number of extensions: 533695
Number of successful extensions: 1019
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)