ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in... 42 1.1
2gb|DP000036.1| Papio anubis target 106 genomic scaffold 42 1.1
3emb|BX640512.4| Zebrafish DNA sequence from clone DKEY-58F10 in ... 42 1.1
4gb|AC111106.10| Mus musculus chromosome 3, clone RP23-193O12, co... 40 4.2
5gb|AC117201.2| Mus musculus BAC clone RP23-216E6 from 16, comple... 40 4.2
6ref|NM_011674.2| Mus musculus UDP galactosyltransferase 8A (Ugt8... 40 4.2
7gb|AC138774.4| Homo sapiens BAC clone RP11-1320P3 from UL, compl... 40 4.2
8gb|BC016885.1| Mus musculus UDP galactosyltransferase 8A, mRNA (... 40 4.2
9gb|AC156608.10| Mus musculus chromosome 8, clone RP23-303A11, co... 40 4.2
10dbj|AK128994.1| Mus musculus cDNA fis, clone TRACH3026744, highl... 40 4.2
11dbj|AK137364.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 4.2
12dbj|AK144005.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 4.2
13dbj|AK163650.1| Mus musculus 10 days neonate medulla oblongata c... 40 4.2
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
15gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, comple... 40 4.2
16dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
17gb|U48896.1|MMCGT6 Mus musculus UDP-galactose:ceramide galactosy... 40 4.2 
>emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in linkage group 5,
             complete sequence
          Length = 122930

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    gtcaaatctgagatgaagcat 114
             |||||||||||||||||||||
Sbjct: 39964 gtcaaatctgagatgaagcat 39944
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>gb|DP000036.1| Papio anubis target 106 genomic scaffold
          Length = 492848

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 132   tcagtactctcaagtatgcatcttg 156
             |||||||||||||| ||||||||||
Sbjct: 83844 tcagtactctcaagaatgcatcttg 83868
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>emb|BX640512.4| Zebrafish DNA sequence from clone DKEY-58F10 in linkage group 5,
             complete sequence
          Length = 191256

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 94    gtcaaatctgagatgaagcat 114
             |||||||||||||||||||||
Sbjct: 90149 gtcaaatctgagatgaagcat 90169
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>gb|AC111106.10| Mus musculus chromosome 3, clone RP23-193O12, complete sequence
          Length = 202749

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    atagaataagcttacagtgc 272
              ||||||||||||||||||||
Sbjct: 125242 atagaataagcttacagtgc 125223
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>gb|AC117201.2| Mus musculus BAC clone RP23-216E6 from 16, complete sequence
          Length = 218980

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 114   ttgccaaatcttcaagcttcagtactct 141
             |||| |||| ||||||||||||||||||
Sbjct: 67886 ttgcaaaattttcaagcttcagtactct 67859
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>ref|NM_011674.2| Mus musculus UDP galactosyltransferase 8A (Ugt8a), mRNA
          Length = 3439

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  atagaataagcttacagtgc 272
            ||||||||||||||||||||
Sbjct: 2881 atagaataagcttacagtgc 2862
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>gb|AC138774.4| Homo sapiens BAC clone RP11-1320P3 from UL, complete sequence
          Length = 194050

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      cttccaaaagctgtctggga 26
              ||||||||||||||||||||
Sbjct: 187964 cttccaaaagctgtctggga 187945
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>gb|BC016885.1| Mus musculus UDP galactosyltransferase 8A, mRNA (cDNA clone MGC:18397
            IMAGE:4223057), complete cds
          Length = 3439

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  atagaataagcttacagtgc 272
            ||||||||||||||||||||
Sbjct: 2881 atagaataagcttacagtgc 2862
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>gb|AC156608.10| Mus musculus chromosome 8, clone RP23-303A11, complete sequence
          Length = 229633

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    cagtcaaatctgagatgaag 111
             ||||||||||||||||||||
Sbjct: 95774 cagtcaaatctgagatgaag 95793
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>dbj|AK128994.1| Mus musculus cDNA fis, clone TRACH3026744, highly similar to
            2-hydroxyacylsphingosine 1-beta-galactosyltransferase
            precursor (EC 2.4.1.45)
          Length = 3598

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  atagaataagcttacagtgc 272
            ||||||||||||||||||||
Sbjct: 2880 atagaataagcttacagtgc 2861
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>dbj|AK137364.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630028M01
            product:UDP-glucuronosyltransferase 8, full insert
            sequence
          Length = 3600

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  atagaataagcttacagtgc 272
            ||||||||||||||||||||
Sbjct: 2887 atagaataagcttacagtgc 2868
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>dbj|AK144005.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F530015P08
            product:UDP-glucuronosyltransferase 8, full insert
            sequence
          Length = 3671

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  atagaataagcttacagtgc 272
            ||||||||||||||||||||
Sbjct: 2887 atagaataagcttacagtgc 2868
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>dbj|AK163650.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
            full-length enriched library, clone:B830013E23
            product:UDP-glucuronosyltransferase 8, full insert
            sequence
          Length = 3392

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  atagaataagcttacagtgc 272
            ||||||||||||||||||||
Sbjct: 2848 atagaataagcttacagtgc 2829
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 279      cgcatcatatctagctagaa 298
                ||||||||||||||||||||
Sbjct: 28101887 cgcatcatatctagctagaa 28101868
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>gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, complete sequence
          Length = 155481

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      ttcagcttccaaaagctgtc 21
              ||||||||||||||||||||
Sbjct: 109269 ttcagcttccaaaagctgtc 109288
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>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0604E01
          Length = 159049

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   cgcatcatatctagctagaa 298
             ||||||||||||||||||||
Sbjct: 99382 cgcatcatatctagctagaa 99363
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>gb|U48896.1|MMCGT6 Mus musculus UDP-galactose:ceramide galactosyltransferase (Cgt) gene,
            exon 6 and complete cds
          Length = 3009

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  atagaataagcttacagtgc 272
            ||||||||||||||||||||
Sbjct: 1553 atagaataagcttacagtgc 1534


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,221,871
Number of Sequences: 3902068
Number of extensions: 2221871
Number of successful extensions: 37033
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37001
Number of HSP's gapped (non-prelim): 32
length of query: 320
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 298
effective length of database: 17,147,199,772
effective search space: 5109865532056
effective search space used: 5109865532056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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