ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL583825.8| Human DNA sequence from clone RP11-362H12 on chr... 40 1.6
2emb|CR847506.8| Zebrafish DNA sequence from clone CH211-225N13 i... 38 6.4
3emb|AL390065.20| Human DNA sequence from clone RP11-520M5 on chr... 38 6.4
4emb|BX640518.5| Zebrafish DNA sequence from clone DKEY-278M12 in... 38 6.4
5ref|NM_001001048.1| Rattus norvegicus olfactory receptor 372 (pr... 38 6.4
6gb|AC069282.6| Homo sapiens BAC clone RP11-61L9 from 7, complete... 38 6.4
7dbj|AK129324.1| Mus musculus mRNA for mKIAA1288 protein 38 6.4
8emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 38 6.4
9gb|AC116511.15| Mus musculus chromosome 8, clone RP24-314H15, co... 38 6.4
10emb|AL928661.10| Mouse DNA sequence from clone RP23-3E2 on chrom... 38 6.4
11emb|Z68192.1|HSL195C9 Human DNA sequence from clone LA04NC01-195... 38 6.4
12emb|AL713990.16| Mouse DNA sequence from clone RP23-224N1 on chr... 38 6.4
13emb|AL929306.4| Zebrafish DNA sequence from clone CH211-145C5 in... 38 6.4

>emb|AL583825.8| Human DNA sequence from clone RP11-362H12 on chromosome 1 Contains a
              mitochondrial intermediate peptidase (MIPEP) pseudogene and
              a CpG island, complete sequence
          Length = 198794

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     gattttctacaagcttttcg 92
              ||||||||||||||||||||
Sbjct: 127176 gattttctacaagcttttcg 127195



to top

>emb|CR847506.8| Zebrafish DNA sequence from clone CH211-225N13 in linkage group 11,
              complete sequence
          Length = 199426

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     atgacagatgtctgatttt 78
              |||||||||||||||||||
Sbjct: 108691 atgacagatgtctgatttt 108709



to top

>emb|AL390065.20| Human DNA sequence from clone RP11-520M5 on chromosome 4, complete
             sequence
          Length = 157119

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   ttcttacagatgaggggtg 130
             |||||||||||||||||||
Sbjct: 45050 ttcttacagatgaggggtg 45032



to top

>emb|BX640518.5| Zebrafish DNA sequence from clone DKEY-278M12 in linkage group 24,
             complete sequence
          Length = 215186

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    atgacagatgtctgatttt 78
             |||||||||||||||||||
Sbjct: 13135 atgacagatgtctgatttt 13117



to top

>ref|NM_001001048.1| Rattus norvegicus olfactory receptor 372 (predicted)
           (Olr372_predicted), mRNA
          Length = 951

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  ctgcaacggatgacagatg 69
           |||||||||||||||||||
Sbjct: 393 ctgcaacggatgacagatg 375



to top

>gb|AC069282.6| Homo sapiens BAC clone RP11-61L9 from 7, complete sequence
          Length = 175938

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    ggctccttgtggtggctgc 54
             |||||||||||||||||||
Sbjct: 15570 ggctccttgtggtggctgc 15588



to top

>dbj|AK129324.1| Mus musculus mRNA for mKIAA1288 protein
          Length = 6127

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 46   ggtggctgcaacggatgac 64
            |||||||||||||||||||
Sbjct: 2287 ggtggctgcaacggatgac 2305



to top

>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 14      gtatgcttcttcaagaatg 32
               |||||||||||||||||||
Sbjct: 1808845 gtatgcttcttcaagaatg 1808827



to top

>gb|AC116511.15| Mus musculus chromosome 8, clone RP24-314H15, complete sequence
          Length = 197718

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 46    ggtggctgcaacggatgac 64
             |||||||||||||||||||
Sbjct: 51036 ggtggctgcaacggatgac 51054



to top

>emb|AL928661.10| Mouse DNA sequence from clone RP23-3E2 on chromosome 4, complete sequence
          Length = 221208

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 107    accatttcttacagatgag 125
              |||||||||||||||||||
Sbjct: 205538 accatttcttacagatgag 205520



to top

>emb|Z68192.1|HSL195C9 Human DNA sequence from clone LA04NC01-195C9 on chromosome 4, complete
             sequence
          Length = 23769

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   ttcttacagatgaggggtg 130
             |||||||||||||||||||
Sbjct: 20113 ttcttacagatgaggggtg 20095



to top

>emb|AL713990.16| Mouse DNA sequence from clone RP23-224N1 on chromosome X, complete
             sequence
          Length = 163330

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 61    tgacagatgtctgattttc 79
             |||||||||||||||||||
Sbjct: 47719 tgacagatgtctgattttc 47701



to top

>emb|AL929306.4| Zebrafish DNA sequence from clone CH211-145C5 in linkage group 11,
              complete sequence
          Length = 176222

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     atgacagatgtctgatttt 78
              |||||||||||||||||||
Sbjct: 113612 atgacagatgtctgatttt 113630


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,022,593
Number of Sequences: 3902068
Number of extensions: 1022593
Number of successful extensions: 64660
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64634
Number of HSP's gapped (non-prelim): 26
length of query: 136
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 115
effective length of database: 17,151,101,840
effective search space: 1972376711600
effective search space used: 1972376711600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top