ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl24f04 |
|---|---|
| Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 84.3 bits (207), Expect = 7e-17 Identities = 42/49 (85%), Positives = 43/49 (87%), Gaps = 5/49 (10%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPS-----DGDPTDEKIVMEMGIPNSISI 127 N DPDRKNRHGAGMVPYVLLRPS DGDPTDEK+VMEMGIPNSISI Sbjct: 888 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 70.9 bits (172), Expect = 8e-13 Identities = 33/44 (75%), Positives = 37/44 (84%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N D R+NRHGAG+VPYVLLRP +G+P D K VMEMGIPNSISI Sbjct: 889 NKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 42.0 bits (97), Expect = 4e-04 Identities = 24/44 (54%), Positives = 28/44 (63%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N +P+ KNR GAG+VPY LL+ P E V GIPNSISI Sbjct: 858 NNNPENKNRCGAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/44 (45%), Positives = 28/44 (63%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N DP R+NR GAG++PY L+ PS G + G+PNS++I Sbjct: 861 NADPSRRNRCGAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 39.7 bits (91), Expect = 0.002 Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -3 Query: 240 KNRHGAGMVPYVLLRPSDGDPTDEK--IVMEMGIPNSISI 127 KNR+G +PY+LL P+ D T EK + MGIPNSISI Sbjct: 838 KNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 38.9 bits (89), Expect = 0.004 Identities = 23/44 (52%), Positives = 26/44 (59%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N D RKNR GAG++PY LL PS V G+PNSISI Sbjct: 880 NADHGRKNRCGAGVLPYELLAPSSPPG-----VTCRGVPNSISI 918
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 38.5 bits (88), Expect = 0.005 Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGD-PTDEKIVMEMGIPNSISI 127 N DP RKNR G PY LL P+ D D + GIPNSISI Sbjct: 826 NKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 38.5 bits (88), Expect = 0.005 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKI-VMEMGIPNSISI 127 N DP+ KNR+G PY+LL P+ D + GIPNSISI Sbjct: 818 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 37.4 bits (85), Expect = 0.010 Identities = 22/44 (50%), Positives = 27/44 (61%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N++ KNR GAG+V Y LL+ PT E V MG+P SISI Sbjct: 858 NVNITLKNRAGAGVVKYELLK-----PTSEHGVTGMGVPYSISI 896
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 36.6 bits (83), Expect = 0.017 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKI-VMEMGIPNSISI 127 N D KNR+G PY+LL P+ D T + GIPNSISI Sbjct: 822 NGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 36.6 bits (83), Expect = 0.017 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRP-SDGDPTDEKIVMEMGIPNSISI 127 N D KNR GAG++PY L++P SD T MGIPNS SI Sbjct: 886 NKDRKLKNRCGAGILPYQLMKPFSDSGVTG------MGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 36.6 bits (83), Expect = 0.017 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRP-SDGDPTDEKIVMEMGIPNSISI 127 N D KNR GAG++PY L++P SD T MGIPNS SI Sbjct: 903 NKDRKLKNRCGAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 34.3 bits (77), Expect = 0.086 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N D +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 815 NKDETLRNRYGPAKMPYTLLYPS-----SEEGLTFRGIPNSISI 853
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 33.9 bits (76), Expect = 0.11 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N D +NRHG +PY LL PS + + GIPNSISI Sbjct: 823 NNDEKLRNRHGPVEMPYTLLYPSSKEGLTFR-----GIPNSISI 861
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 33.1 bits (74), Expect = 0.19 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N D +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 828 NNDESLRNRYGPVKMPYTLLYPS-----SEEGLTCRGIPNSISI 866
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 33.1 bits (74), Expect = 0.19 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N DP +NR G +PY LL S E+ + GIPNSISI Sbjct: 826 NSDPSLRNRTGPVQLPYTLLHRS-----SEEGLTFKGIPNSISI 864
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 33.1 bits (74), Expect = 0.19 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTD-EKIVMEMGIPNSISI 127 N DP KNR G PY L+ P+ D + + GIPNSISI Sbjct: 819 NKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 32.3 bits (72), Expect = 0.33 Identities = 21/44 (47%), Positives = 23/44 (52%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N D KNR G +PY LL PS E V GIPNS+SI Sbjct: 821 NDDETLKNRTGLVKMPYTLLFPS-----SEGGVTGRGIPNSVSI 859
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 32.0 bits (71), Expect = 0.43 Identities = 19/38 (50%), Positives = 22/38 (57%) Frame = -3 Query: 240 KNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 KNR G VPY LL P T E+ + GIPNS+SI Sbjct: 827 KNRSGPVNVPYTLLFP-----TSEEGLTGKGIPNSVSI 859
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 31.2 bits (69), Expect = 0.73 Identities = 19/44 (43%), Positives = 23/44 (52%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N DP +R G +PY LL PS + + GIPNSISI Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPSSKEGLTFR-----GIPNSISI 864
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N D +NR+G +PY +L P+ +++ + GIPNSISI Sbjct: 823 NKDSSLRNRNGPVKMPYTVLLPT----CEDEGLTFRGIPNSISI 862
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/44 (43%), Positives = 23/44 (52%) Frame = -3 Query: 258 NIDPDRKNRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N D +NR G +PY LL PS + + GIPNSISI Sbjct: 819 NNDEKLRNRCGPVQMPYTLLLPSSKEGLTFR-----GIPNSISI 857
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 30.0 bits (66), Expect = 1.6 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 258 NIDPDRK-NRHGAGMVPYVLLRPSDGDPTDEKIVMEMGIPNSISI 127 N DP + NR G +PY LL PS E+ + GIPNSISI Sbjct: 800 NNDPSLQGNRLGPVQLPYTLLYPSS-----EEGLTFRGIPNSISI 839
>XERD_VIBCH (Q9KPE9) Tyrosine recombinase xerD| Length = 302 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +1 Query: 154 LHHYLLVRGITVRRPEQHIRHHAGAVSVFPVGVDV 258 + HY ++ GI V + H+ HA A + G D+ Sbjct: 231 IKHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADL 265
>UREE_RHOS4 (Q3J156) Urease accessory protein ureE| Length = 182 Score = 27.7 bits (60), Expect = 8.1 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -2 Query: 250 PRPEKPTRRRHGAVCAAQAVGR*SHGREDSDGDGHPQQHLHLS 122 PR E P R GA + +G HG G HP H+H+S Sbjct: 128 PRTE-PFRPEGGAYGHGRTLGH-DHGPAQGHGHDHPHVHVHIS 168 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,803,390 Number of Sequences: 219361 Number of extensions: 837684 Number of successful extensions: 2188 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2174 length of database: 80,573,946 effective HSP length: 62 effective length of database: 66,973,564 effective search space used: 1607365536 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
