ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YPJA_BACSU (P54392) Hypothetical protein ypjA 30 1.6
2T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46) 29 3.5
3REP1_ZYGBA (P13776) Trans-acting factor B (REP1) 28 6.0
4SUT1_STYHA (P53391) High affinity sulphate transporter 1 28 6.0
5SUT2_STYHA (P53392) High affinity sulphate transporter 2 28 7.8

>YPJA_BACSU (P54392) Hypothetical protein ypjA|
          Length = 185

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 224 FVVLAFHLVKA-QGISINYSIWLCVSRFSRWNPTVVAASFLFNAVKQFLVDLEPHYFLIS 48
           ++++A H   A QG+   YS +    RFS W+  + A   L N V  +L D+ P Y ++S
Sbjct: 95  YMLIASHFAMAVQGVL--YSPYF---RFSFWHLAIAAVWTLHNDVIDYLFDMMPQYSMLS 149



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>T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46)|
          Length = 309

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 215 LAFHLVKAQGISINYSIWLCVSRFSRWNPTVVAASFL 105
           LAFH V+ +  S  Y++W+  + FS W  T ++  +L
Sbjct: 73  LAFHSVEVR--STAYNVWVVTNHFSNWLSTSLSMFYL 107



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>REP1_ZYGBA (P13776) Trans-acting factor B (REP1)|
          Length = 357

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +2

Query: 77  QPKIVLLR*TRMMLQQQWDSNEKTDLHIAIYYN*SKSLVLSPDGKPKQQIGQPKNS 244
           +P +V+   T+     +  +N+  D+++    N   S +  P+ K  +++GQPK +
Sbjct: 83  EPYVVVNTITKRFQDHKLFANKNADVYVERLQNAIASGIKIPESKKNERLGQPKKT 138



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>SUT1_STYHA (P53391) High affinity sulphate transporter 1|
          Length = 667

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 197 KAQGISINYSIWLCVSRFSRWNPTVVAASFL-FNAVKQFLVDLEPHYFLISSLTSIVHAI 21
           K   IS+  S+W  V     W   ++  SFL F  + +++       F +S+++ ++  I
Sbjct: 249 KTDIISVMRSVWTHVHHGWNWETILIGLSFLIFLLITKYIAKKNKKLFWVSAISPMISVI 308

Query: 20  I 18
           +
Sbjct: 309 V 309



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>SUT2_STYHA (P53392) High affinity sulphate transporter 2|
          Length = 662

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 185 ISINYSIWLCVSRFSRWNPTVVAASFL-FNAVKQFLVDLEPHYFLISSLTSIVHAII 18
           +S+ +S+W  V     W   ++  SFL F  + +++       F +S+++ ++  I+
Sbjct: 248 VSVMHSVWSNVHHGWNWETILIGLSFLIFLLITKYIAKKNKKLFWVSAISPMICVIV 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,711,835
Number of Sequences: 219361
Number of extensions: 608240
Number of successful extensions: 1444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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