ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA 60 4e-06
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
3dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
4dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
5dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
6gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence 56 6e-05
7emb|BX914203.24| Zebrafish DNA sequence from clone CH211-22E19 i... 42 0.97
8gb|AC090538.6| Homo sapiens chromosome 11, clone RP5-1079I11, co... 42 0.97
9gb|AY954958.1| Bacteriophage 37, complete genome 42 0.97
10gb|AC140272.3| Mus musculus BAC clone RP23-332G6 from 8, complet... 42 0.97
11emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in... 40 3.8
12gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, comp... 40 3.8
13gb|AC073267.5|AC073267 Homo sapiens BAC clone RP11-419J10 from 7... 40 3.8
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
15gb|AC153657.4| Mus musculus BAC clone RP23-324B3 from chromosome... 40 3.8
16gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F... 40 3.8
17gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O... 40 3.8
18emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 3.8
19emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, ... 40 3.8
20emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chr... 40 3.8
21dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
22dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
23gb|AC004402.1|AC004402 Homo sapiens Cosmid g5129z061, complete s... 40 3.8
24dbj|AB231868.1| Nematostella vectensis genes for zinc finger pro... 40 3.8
25emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chrom... 40 3.8 
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 255  tttagccatttgcaacaatttcatggatcctgtcactg 292
            |||||||||||||||| |||||||||||| ||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactg 2863



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 64   tgtggttccaaatcaaccaaaaattgtt 91
            |||||||||||||||| |||||||||||
Sbjct: 3098 tgtggttccaaatcaatcaaaaattgtt 3071
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                     
Query: 255     tttagccatttgcaacaatttcatggatcctgtcactg 292
               |||||||||||||||| |||||||||||| ||||||||
Sbjct: 5491408 tttagccatttgcaacgatttcatggatcttgtcactg 5491371



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 64      tgtggttccaaatcaaccaaaaattgtt 91
               |||||||||||||||| |||||||||||
Sbjct: 5491606 tgtggttccaaatcaatcaaaaattgtt 5491579
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>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0081K20
          Length = 117287

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 255  tttagccatttgcaacaatttcatggatcctgtcactg 292
            |||||||||||||||| |||||||||||| ||||||||
Sbjct: 4493 tttagccatttgcaacgatttcatggatcttgtcactg 4456



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 64   tgtggttccaaatcaaccaaaaattgtt 91
            |||||||||||||||| |||||||||||
Sbjct: 4691 tgtggttccaaatcaatcaaaaattgtt 4664
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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 255    tttagccatttgcaacaatttcatggatcctgtcactg 292
              |||||||||||||||| |||||||||||| ||||||||
Sbjct: 125389 tttagccatttgcaacgatttcatggatcttgtcactg 125352



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 64     tgtggttccaaatcaaccaaaaattgtt 91
              |||||||||||||||| |||||||||||
Sbjct: 125587 tgtggttccaaatcaatcaaaaattgtt 125560
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>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
            insert sequence
          Length = 3193

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 255  tttagccatttgcaacaatttcatggatcctgtcactg 292
            |||||||||||||||| |||||||||||| ||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactg 2863



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 64   tgtggttccaaatcaaccaaaaattgtt 91
            |||||||||||||||| |||||||||||
Sbjct: 3098 tgtggttccaaatcaatcaaaaattgtt 3071
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>gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence
          Length = 1125

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 253 gttttagccatttgcaacaatttcatggatcctgtcactg 292
           |||||||||||| || |||||||| |||||||||||||||
Sbjct: 960 gttttagccattagcgacaatttcgtggatcctgtcactg 921
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>emb|BX914203.24| Zebrafish DNA sequence from clone CH211-22E19 in linkage group 11,
              complete sequence
          Length = 179563

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 208    aaagccaaaacaacaaataggtcaa 232
              ||||| |||||||||||||||||||
Sbjct: 158008 aaagcaaaaacaacaaataggtcaa 157984
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>gb|AC090538.6| Homo sapiens chromosome 11, clone RP5-1079I11, complete sequence
          Length = 158201

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 212    ccaaaacaacaaataggtcaa 232
              |||||||||||||||||||||
Sbjct: 102456 ccaaaacaacaaataggtcaa 102476
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>gb|AY954958.1| Bacteriophage 37, complete genome
          Length = 43681

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   aacaaataggtcaaccaaaaa 239
             |||||||||||||||||||||
Sbjct: 33708 aacaaataggtcaaccaaaaa 33688
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>gb|AC140272.3| Mus musculus BAC clone RP23-332G6 from 8, complete sequence
          Length = 228667

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 27     atgtactattgaagtcaaggaggatataa 55
              |||| |||||||||| |||||||||||||
Sbjct: 142350 atgtgctattgaagtaaaggaggatataa 142378
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>emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in linkage group 12,
             complete sequence
          Length = 153572

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    caaatcaaccaaaaattgtt 91
             ||||||||||||||||||||
Sbjct: 48507 caaatcaaccaaaaattgtt 48488
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>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence
          Length = 159145

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     caaccaaaaattgttttact 96
              ||||||||||||||||||||
Sbjct: 143015 caaccaaaaattgttttact 143034
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>gb|AC073267.5|AC073267 Homo sapiens BAC clone RP11-419J10 from 7, complete sequence
          Length = 34575

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   aacaaataggtcaaccaaaa 238
             ||||||||||||||||||||
Sbjct: 23480 aacaaataggtcaaccaaaa 23499
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 205      tggaaagccaaaacaacaaa 224
                ||||||||||||||||||||
Sbjct: 21750132 tggaaagccaaaacaacaaa 21750113
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>gb|AC153657.4| Mus musculus BAC clone RP23-324B3 from chromosome 12, complete sequence
          Length = 208058

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    gaaagccaaaacaacaaata 226
              ||||||||||||||||||||
Sbjct: 151278 gaaagccaaaacaacaaata 151259
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>gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F18, complete sequence
          Length = 110085

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    caaccaaaaattgttttact 96
             ||||||||||||||||||||
Sbjct: 74126 caaccaaaaattgttttact 74107
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>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence
          Length = 141894

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    caaccaaaaattgttttact 96
             ||||||||||||||||||||
Sbjct: 98121 caaccaaaaattgttttact 98102
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>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     caaatcaaccaaaaattgtt 91
              ||||||||||||||||||||
Sbjct: 107923 caaatcaaccaaaaattgtt 107942
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>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence
          Length = 164218

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    ataattaatcgaaatccctt 190
              ||||||||||||||||||||
Sbjct: 160378 ataattaatcgaaatccctt 160359
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>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete
              sequence
          Length = 125394

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    caagaatgatgctgcaacaa 124
              ||||||||||||||||||||
Sbjct: 115520 caagaatgatgctgcaacaa 115539
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>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0429B05
          Length = 155024

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   tggaaagccaaaacaacaaa 224
             ||||||||||||||||||||
Sbjct: 29715 tggaaagccaaaacaacaaa 29696
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>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0479C12
          Length = 136799

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    tggaaagccaaaacaacaaa 224
              ||||||||||||||||||||
Sbjct: 117702 tggaaagccaaaacaacaaa 117683
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>gb|AC004402.1|AC004402 Homo sapiens Cosmid g5129z061, complete sequence
          Length = 37539

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   aacaaataggtcaaccaaaa 238
             ||||||||||||||||||||
Sbjct: 25552 aacaaataggtcaaccaaaa 25571
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>dbj|AB231868.1| Nematostella vectensis genes for zinc finger proteins Nv-ZicB, Nv-ZicC,
             Nv-ZicD, Nv-ZicE, complete cds
          Length = 177971

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 202   agatggaaagccaaaacaacaaat 225
             |||| |||||||||||||||||||
Sbjct: 86694 agatagaaagccaaaacaacaaat 86671
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>emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chromosome 2, complete
             sequence
          Length = 217609

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   caagaatgatgctgcaacaa 124
             ||||||||||||||||||||
Sbjct: 48422 caagaatgatgctgcaacaa 48441


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,424,363
Number of Sequences: 3902068
Number of extensions: 3424363
Number of successful extensions: 67209
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67108
Number of HSP's gapped (non-prelim): 101
length of query: 292
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 270
effective length of database: 17,147,199,772
effective search space: 4629743938440
effective search space used: 4629743938440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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