ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TLK1_HUMAN (Q9UKI8) Serine/threonine-protein kinase tousled-like... 29 3.6
2ZNF80_PONPY (P51507) Zinc finger protein 80 28 4.7
3TLK1_MOUSE (Q8C0V0) Serine/threonine-protein kinase tousled-like... 28 6.1
4RS8_GRIJA (Q9ZT56) 40S ribosomal protein S8 28 8.0

>TLK1_HUMAN (Q9UKI8) Serine/threonine-protein kinase tousled-like 1 (EC|
           2.7.11.1) (Tousled-like kinase 1) (PKU-beta)
          Length = 766

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 94  LYLQAVQLQLTEAKLAVSKRGKEEDE*KKQGHMSELLR 207
           L  + +Q  LT  KLA  +  K +D  KK+G + +LLR
Sbjct: 207 LSFKIIQTDLTMLKLAALESNKIQDLEKKEGRIDDLLR 244



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>ZNF80_PONPY (P51507) Zinc finger protein 80|
          Length = 273

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 86  DTLYTCKQYSYNLQRQSSLSPKGGKKRMNRRSKDT*ANCSGCGRDTHLDACFYRASMT 259
           + L+ CK+   +    SSL+     + M   +++    CS CG+     + F+R SMT
Sbjct: 158 EKLFGCKECGKSFYYNSSLT-----RHMKIHTREKPYKCSECGKTFTYHSVFFRHSMT 210



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>TLK1_MOUSE (Q8C0V0) Serine/threonine-protein kinase tousled-like 1 (EC|
           2.7.11.1) (Tousled-like kinase 1)
          Length = 766

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 94  LYLQAVQLQLTEAKLAVSKRGKEEDE*KKQGHMSELLR 207
           L  +  Q  LT  KLA  +  K +D  KK+G + +LLR
Sbjct: 207 LSFKITQTDLTMLKLAALESTKNQDLEKKEGRIDDLLR 244



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>RS8_GRIJA (Q9ZT56) 40S ribosomal protein S8|
          Length = 204

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 95  YTCKQYSYNLQRQSSLSPKGGK 160
           YTCK+  Y L RQ +++  GGK
Sbjct: 20  YTCKKRKYELGRQPAMTKIGGK 41


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,715,895
Number of Sequences: 219361
Number of extensions: 551301
Number of successful extensions: 1443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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