ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMDM_SCHPO (P50998) AMP deaminase (EC 3.5.4.6) (Myoadenylate dea... 30 1.9
2ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7 30 3.2
3YGJ3_YEAST (P53148) Hypothetical 104.8 kDa protein in PAN2-NUP14... 30 3.2
4ATS8_HUMAN (Q9UP79) ADAMTS-8 precursor (EC 3.4.24.-) (A disinteg... 28 7.1
5SIGL5_HUMAN (O15389) Sialic acid-binding Ig-like lectin 5 precur... 28 7.1
6NUCB1_HUMAN (Q02818) Nucleobindin-1 precursor (CALNUC) 28 9.2

>AMDM_SCHPO (P50998) AMP deaminase (EC 3.5.4.6) (Myoadenylate deaminase)|
          Length = 846

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 59  VDQPSIPELPLAYQLTLTTERETHKTEATSQPKVHPKTMEL*HVLEEISKMHGTGE 226
           +D+ ++P + LAY+  LT  +E        QP  HP   +L  ++ +   M GT +
Sbjct: 738 IDRTNVPIIRLAYR-ALTLTQEIALVNKHVQPSKHPSNHDLEELIHKYDAMTGTSD 792



to top

>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7|
          Length = 920

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +3

Query: 246 AESIPEPPPLLCAKDLSKRSLSPSKGFFFIARFVLDSDSAPAGHPQGKIHPNTQAL 413
           AE  P PPP+    D+    L+  K     +   L S  APAGH     +P T  L
Sbjct: 772 AEFTPGPPPISYQSDIPSSLLTSEK-----STACLPSQMAPAGHLDPTHNPGTPGL 822



to top

>YGJ3_YEAST (P53148) Hypothetical 104.8 kDa protein in PAN2-NUP145 intergenic|
            region
          Length = 917

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
 Frame = +3

Query: 78   LSFHLHTSSPLXXXXXXXXXXXXASQKFTLKRWNYSMSLKKYLKCMALGKYSRTEEAESI 257
            +S+HL T   L            ++  F +K+W   +   K LK +   K ++TEE E+ 
Sbjct: 781  MSYHLFTML-LKNVEAEHQDSMLSNLFFAMKKWRPLLKYIKLLKLLFPVKITQTEEEEA- 838

Query: 258  PEPPPLLCAKDLSKRSLSPSKGFFFIARFVLDSDS--APAGHPQGKIHPNTQ 407
                 LL  KD  +R+      FF++   V  +    +  G    K+H +TQ
Sbjct: 839  -----LLQFKDYDRRN---KTAFFYVISLVSFAQGVFSENGQIPMKVHISTQ 882



to top

>ATS8_HUMAN (Q9UP79) ADAMTS-8 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 8) (ADAM-TS
           8) (ADAM-TS8) (METH-2) (METH-8)
          Length = 890

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 231 SRTEEAESIPEPPPLLCAKDLSKRSLSPSK 320
           S+ EEAE   EPPP L A   +KR +S ++
Sbjct: 191 SQEEEAEGASEPPPPLGATSRTKRFVSEAR 220



to top

>SIGL5_HUMAN (O15389) Sialic acid-binding Ig-like lectin 5 precursor (Siglec-5)|
           (Obesity-binding protein 2) (OB-binding protein 2)
           (OB-BP2) (CD33 antigen-like 2) (CD170 antigen)
          Length = 551

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 47  WTAPVDQPSIPELPLAYQLTLTTERETHKTEATSQPK 157
           WT     P  PE   + +LTLT   E H T  T Q K
Sbjct: 180 WTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMK 216



to top

>NUCB1_HUMAN (Q02818) Nucleobindin-1 precursor (CALNUC)|
          Length = 461

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 363 APAGHPQG--KIHPNTQALRIAAP 428
           APA HP+G  K HP+T  + + AP
Sbjct: 411 APAAHPEGQLKFHPDTDDVPVPAP 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,405,295
Number of Sequences: 219361
Number of extensions: 1313640
Number of successful extensions: 4031
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4030
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top