ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
2dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
3dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
4dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA... 111 2e-21
5emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4,... 96 1e-16
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
7dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
8dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
9dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA... 94 4e-16
10emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, ex... 88 3e-14
11emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein 88 3e-14
12emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene) 62 2e-06
13gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete s... 50 0.006
14gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) ... 50 0.006
15gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.37
16gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 44 0.37
17emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 44 0.37
18gb|AC158514.2| Mus musculus BAC clone RP24-480D16 from chromosom... 42 1.5
19gb|AC147065.2| Pan troglodytes BAC clone RP43-163G7 from 7, comp... 42 1.5
20gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosom... 42 1.5
21emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene) 42 1.5
22gb|AC018647.5| Homo sapiens chromosome 7 clone RP11-379H18, comp... 42 1.5
23emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chro... 42 1.5
24gb|AC068233.11| Homo sapiens chromosome 15, clone RP11-169M2, co... 42 1.5
25gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, compl... 42 1.5
26gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, comp... 42 1.5
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
28gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete s... 42 1.5
29gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complet... 42 1.5
30ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 1.5
31dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
32dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
33dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
34gb|AY110994.1| Zea mays CL1209_1 mRNA sequence 42 1.5
35ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); ... 40 5.8
36gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 5.8
37emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chr... 40 5.8
38gb|AC125199.3| Mus musculus BAC clone RP23-261K7 from chromosome... 40 5.8
39gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complet... 40 5.8
40gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's ... 40 5.8
41gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome... 40 5.8
42emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
43emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c... 40 5.8
44emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on ch... 40 5.8
45gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequ... 40 5.8
46gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 5.8
47emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Co... 40 5.8
48gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 40 5.8
49gb|AF077335.1|AF077335 Arabidopsis thaliana Anthocyaninless2 (AN... 40 5.8
50gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, compl... 40 5.8
51gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AH... 40 5.8
52gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox p... 40 5.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 2e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                            
Query: 237      acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 295
                |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 27506748 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 27506807

                                            
Query: 296      aa-aaagatccttatcacctagcaaagg 322
                ||  ||||||||||||||||||||||||
Sbjct: 27506808 aagcaagatccttatcacctagcaaagg 27506835



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 336      gcgcggttcgttcttgactcag 357
                ||||||||||||||||||||||
Sbjct: 27506854 gcgcggttcgttcttgactcag 27506875
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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0657H12
          Length = 142688

 Score =  111 bits (56), Expect = 2e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                         
Query: 237   acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 295
             |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 98470 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 98529

                                         
Query: 296   aa-aaagatccttatcacctagcaaagg 322
             ||  ||||||||||||||||||||||||
Sbjct: 98530 aagcaagatccttatcacctagcaaagg 98557



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 336   gcgcggttcgttcttgactcag 357
             ||||||||||||||||||||||
Sbjct: 98576 gcgcggttcgttcttgactcag 98597
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>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full
            insert sequence
          Length = 3437

 Score =  111 bits (56), Expect = 2e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                        
Query: 237  acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 295
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 3048 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2989

                                        
Query: 296  aa-aaagatccttatcacctagcaaagg 322
            ||  ||||||||||||||||||||||||
Sbjct: 2988 aagcaagatccttatcacctagcaaagg 2961



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 336  gcgcggttcgttcttgactcag 357
            ||||||||||||||||||||||
Sbjct: 2942 gcgcggttcgttcttgactcag 2921
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>dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 3114

 Score =  111 bits (56), Expect = 2e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                        
Query: 237  acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 295
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 2728 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2669

                                        
Query: 296  aa-aaagatccttatcacctagcaaagg 322
            ||  ||||||||||||||||||||||||
Sbjct: 2668 aagcaagatccttatcacctagcaaagg 2641



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 336  gcgcggttcgttcttgactcag 357
            ||||||||||||||||||||||
Sbjct: 2622 gcgcggttcgttcttgactcag 2601
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>emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06,
             complete sequence
          Length = 125196

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                                 
Query: 242   agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 293
             |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65120 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 65171



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 337   cgcggttcgttcttgactcagactcagcgcc 367
             ||||||||||||||||||||| |||| ||||
Sbjct: 65215 cgcggttcgttcttgactcaggctcatcgcc 65245
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                                    
Query: 242      agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 293
                |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28574330 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 28574381



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 337      cgcggttcgttcttgactcagactcagcgcc 367
                ||||||||||||||||||||| |||| ||||
Sbjct: 28574425 cgcggttcgttcttgactcaggctcatcgcc 28574455



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 132     aaacagaggcaacgagccagccaa 155
               |||||||| |||||||||||||||
Sbjct: 3500684 aaacagagccaacgagccagccaa 3500661
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>dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E06, full
            insert sequence
          Length = 3089

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 242  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 293
            |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2725 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2674



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 337  cgcggttcgttcttgactcagactcagcgcc 367
            ||||||||||||||||||||| |||| ||||
Sbjct: 2630 cgcggttcgttcttgactcaggctcatcgcc 2600
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>dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128F17, full
            insert sequence
          Length = 3052

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 242  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 293
            |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2707 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2656



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 337  cgcggttcgttcttgactcagactcagcgcc 367
            ||||||||||||||||||||| |||| ||||
Sbjct: 2612 cgcggttcgttcttgactcaggctcatcgcc 2582
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>dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 2957

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                               
Query: 243  gaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 293
            ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2608 gaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2558



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 337  cgcggttcgttcttgactcagactcagcgcc 367
            ||||||||||||||||||||| |||| ||||
Sbjct: 2514 cgcggttcgttcttgactcaggctcatcgcc 2484
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>emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, exons 1-9
          Length = 9947

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 242  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 299
            |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| ||   
Sbjct: 9006 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 8947

                                   
Query: 300  agatccttatcacctagcaaagg 322
             ||||||||||||||||||||||
Sbjct: 8946 ggatccttatcacctagcaaagg 8924
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>emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein
          Length = 3092

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 242  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 299
            |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| ||   
Sbjct: 2784 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 2725

                                   
Query: 300  agatccttatcacctagcaaagg 322
             ||||||||||||||||||||||
Sbjct: 2724 ggatccttatcacctagcaaagg 2702
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>emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene)
          Length = 2660

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                       
Query: 243  gaggccgagtcaatacccgaaccaccaccattgctctgtgcta 285
            ||||| |||||||||||||||||||| |||||||| |||||||
Sbjct: 2346 gaggctgagtcaatacccgaaccaccgccattgctgtgtgcta 2304



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 334  ttgcgcggttcgttcttgactcag 357
            ||||||||||||||||||||||||
Sbjct: 2255 ttgcgcggttcgttcttgactcag 2232
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>gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete sequence
          Length = 107371

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 247   ccgagtcaatacccgaaccaccacc 271
             |||||||||||||||||||||||||
Sbjct: 25596 ccgagtcaatacccgaaccaccacc 25620
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>gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) mRNA, complete cds
          Length = 2423

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 247  ccgagtcaatacccgaaccaccaccattgctctgtgctaag 287
            ||||||||||||||||||||||| | ||||  |||||||||
Sbjct: 2277 ccgagtcaatacccgaaccaccagccttgcattgtgctaag 2237
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 213     atggcactggggaaatacagcc 234
               ||||||||||||||||||||||
Sbjct: 3520927 atggcactggggaaatacagcc 3520948
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 213     atggcactggggaaatacagcc 234
               ||||||||||||||||||||||
Sbjct: 2665467 atggcactggggaaatacagcc 2665446
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>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
             sequence
          Length = 205589

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 195   aagaaatatctaaaatgcatgg 216
             ||||||||||||||||||||||
Sbjct: 95615 aagaaatatctaaaatgcatgg 95636
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>gb|AC158514.2| Mus musculus BAC clone RP24-480D16 from chromosome 12, complete
             sequence
          Length = 204825

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   agagagacgcacaaaacagag 139
             |||||||||||||||||||||
Sbjct: 84515 agagagacgcacaaaacagag 84535
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>gb|AC147065.2| Pan troglodytes BAC clone RP43-163G7 from 7, complete sequence
          Length = 167103

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     cccagcattcctgagcttcca 88
              |||||||||||||||||||||
Sbjct: 130358 cccagcattcctgagcttcca 130378
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>gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosome 12, complete
            sequence
          Length = 201338

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 119  agagagacgcacaaaacagag 139
            |||||||||||||||||||||
Sbjct: 8820 agagagacgcacaaaacagag 8800
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>emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene)
          Length = 3580

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 250  agtcaatacccgaaccaccac 270
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
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>gb|AC018647.5| Homo sapiens chromosome 7 clone RP11-379H18, complete sequence
          Length = 160732

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     cccagcattcctgagcttcca 88
              |||||||||||||||||||||
Sbjct: 139215 cccagcattcctgagcttcca 139195
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>emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 94643

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 215   ggcactggggaaatacagccg 235
             |||||||||||||||||||||
Sbjct: 19820 ggcactggggaaatacagccg 19800
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>gb|AC068233.11| Homo sapiens chromosome 15, clone RP11-169M2, complete sequence
          Length = 177483

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 66    aacccagcattcctgagcttc 86
             |||||||||||||||||||||
Sbjct: 94469 aacccagcattcctgagcttc 94449
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>gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, complete sequence
          Length = 166500

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 262   aaccaccaccattgctctgtgctaa 286
             |||||||||||||||| ||||||||
Sbjct: 39977 aaccaccaccattgctttgtgctaa 40001
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>gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, complete sequence
          Length = 101912

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 130   caaaacagaggcaacgagccagccaaaag 158
             ||||||||||||| ||||| |||||||||
Sbjct: 44542 caaaacagaggcaccgagctagccaaaag 44514
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 250      agtcaatacccgaaccaccac 270
                |||||||||||||||||||||
Sbjct: 20266847 agtcaatacccgaaccaccac 20266867
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>gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete sequence
          Length = 120951

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 130    caaaacagaggcaacgagccagccaaaag 158
              ||||||||||||| ||||| |||||||||
Sbjct: 102359 caaaacagaggcaccgagctagccaaaag 102331
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>gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complete sequence
          Length = 145383

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 130    caaaacagaggcaacgagccagccaaaag 158
              ||||||||||||| ||||| |||||||||
Sbjct: 121766 caaaacagaggcaccgagctagccaaaag 121794
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 130     caaaacagaggcaacgagccagccaaaag 158
               ||||||||||||| ||||| |||||||||
Sbjct: 3958563 caaaacagaggcaccgagctagccaaaag 3958591



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 130     caaaacagaggcaacgagccagccaaaag 158
               ||||||||||||| ||||| |||||||||
Sbjct: 2089771 caaaacagaggcaccgagctagccaaaag 2089743
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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1439_F07
          Length = 153743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 250   agtcaatacccgaaccaccac 270
             |||||||||||||||||||||
Sbjct: 45974 agtcaatacccgaaccaccac 45994
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>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0047P18
          Length = 169128

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 250    agtcaatacccgaaccaccac 270
              |||||||||||||||||||||
Sbjct: 160347 agtcaatacccgaaccaccac 160367
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>dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040J18, full
            insert sequence
          Length = 2218

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 250  agtcaatacccgaaccaccac 270
            |||||||||||||||||||||
Sbjct: 2007 agtcaatacccgaaccaccac 1987
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>gb|AY110994.1| Zea mays CL1209_1 mRNA sequence
          Length = 3550

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 250  agtcaatacccgaaccaccac 270
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
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>ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); transcription factor
            AT4G00730 (ANL2) mRNA, complete cds
          Length = 3174

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  agtcaatacccgaaccacca 269
            ||||||||||||||||||||
Sbjct: 3018 agtcaatacccgaaccacca 2999



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  gcgcggttcgttcttgactc 355
            ||||||||||||||||||||
Sbjct: 2917 gcgcggttcgttcttgactc 2898
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>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    acccgaaccaccaccattgc 276
              ||||||||||||||||||||
Sbjct: 490925 acccgaaccaccaccattgc 490906
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>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete
             sequence
          Length = 211741

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   cttgaagaaatatctaaaat 210
             ||||||||||||||||||||
Sbjct: 48642 cttgaagaaatatctaaaat 48661
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>gb|AC125199.3| Mus musculus BAC clone RP23-261K7 from chromosome 16, complete sequence
          Length = 226724

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   aaaatccaccctaacactca 406
             ||||||||||||||||||||
Sbjct: 21163 aaaatccaccctaacactca 21144
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>gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complete cds
          Length = 3110

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 249  gagtcaatacccgaaccaccaccattgc 276
            ||||||||||||||||||| ||| ||||
Sbjct: 2996 gagtcaatacccgaaccactacccttgc 2969
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>gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 209981

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    ttgaagaaatatctaaaatg 211
              ||||||||||||||||||||
Sbjct: 157323 ttgaagaaatatctaaaatg 157304
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>gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome 12, complete sequence
          Length = 181828

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    ttcctgagcttccacttgcatacc 98
             |||||||||||||||| |||||||
Sbjct: 45022 ttcctgagcttccactggcatacc 44999
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>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11,
             complete sequence
          Length = 127419

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   aaacagaggcaacgagccagccaa 155
             |||||||| |||||||||||||||
Sbjct: 89979 aaacagagccaacgagccagccaa 89956
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>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
          Length = 197975

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    gcgcggttcgttcttgactc 355
              ||||||||||||||||||||
Sbjct: 106303 gcgcggttcgttcttgactc 106322



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    agtcaatacccgaaccacca 269
              ||||||||||||||||||||
Sbjct: 106202 agtcaatacccgaaccacca 106221
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>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a
             protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1)
             pseudogene and a CpG island, complete sequence
          Length = 197265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   gaaccaccaccattgctctg 280
             ||||||||||||||||||||
Sbjct: 63006 gaaccaccaccattgctctg 63025
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>gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequence
          Length = 2075

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  agtcaatacccgaaccacca 269
            ||||||||||||||||||||
Sbjct: 1938 agtcaatacccgaaccacca 1919



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  gcgcggttcgttcttgactc 355
            ||||||||||||||||||||
Sbjct: 1837 gcgcggttcgttcttgactc 1818
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 371     cggtcatccccaaggcaaaatcca 394
               ||||||||||| ||||||||||||
Sbjct: 2038679 cggtcatcccccaggcaaaatcca 2038702
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>emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS51ZF02 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 3144

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  agtcaatacccgaaccacca 269
            ||||||||||||||||||||
Sbjct: 2957 agtcaatacccgaaccacca 2938



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  gcgcggttcgttcttgactc 355
            ||||||||||||||||||||
Sbjct: 2856 gcgcggttcgttcttgactc 2837
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>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23
          Length = 91849

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   gcgcggttcgttcttgactc 355
             ||||||||||||||||||||
Sbjct: 87429 gcgcggttcgttcttgactc 87448



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   agtcaatacccgaaccacca 269
             ||||||||||||||||||||
Sbjct: 87328 agtcaatacccgaaccacca 87347
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>gb|AF077335.1|AF077335 Arabidopsis thaliana Anthocyaninless2 (ANL2) gene, complete cds
          Length = 9277

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  gcgcggttcgttcttgactc 355
            ||||||||||||||||||||
Sbjct: 6614 gcgcggttcgttcttgactc 6595
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>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence
          Length = 168481

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    ccagcattcctgagcttcca 88
             ||||||||||||||||||||
Sbjct: 62548 ccagcattcctgagcttcca 62529
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>gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AHDP mRNA, complete cds
          Length = 2953

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  agtcaatacccgaaccacca 269
            ||||||||||||||||||||
Sbjct: 2838 agtcaatacccgaaccacca 2819



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  gcgcggttcgttcttgactc 355
            ||||||||||||||||||||
Sbjct: 2737 gcgcggttcgttcttgactc 2718
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>gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox protein mRNA, complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 249  gagtcaatacccgaaccaccaccattgc 276
            |||||||||||||||||| |||| ||||
Sbjct: 2798 gagtcaatacccgaaccaacacccttgc 2771


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,265,917
Number of Sequences: 3902068
Number of extensions: 3265917
Number of successful extensions: 57545
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57338
Number of HSP's gapped (non-prelim): 203
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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